When I try to reinstall all ROS packages after Alexis Ballier changed ROS' package path (#595004; btw. thank you!), the following packages fail to merge: * dev-ros/controller_manager-0.11.1, * dev-ros/controller_interface-0.11.1, * dev-ros/geometric_shapes-0.5.1, * dev-ros/diagnostic_aggregator-1.8.10, * dev-ros/tf2_eigen-0.5.13, and * dev-ros/urdf-1.12.4 The error messages seem to be consistent problems with CMake not finding various packages. For instance dev-ros/controller_manager-0.11.1 complains about missing boost: --- snip --- […] -- catkin 0.7.2 CMake Error at /usr/share/catkin/cmake/catkin_package.cmake:163 (message): catkin_package() DEPENDS on 'boost' which must be find_package()-ed before. If it is a catkin package it can be declared as CATKIN_DEPENDS instead without find_package()-ing it. Call Stack (most recent call first): /usr/share/catkin/cmake/catkin_package.cmake:102 (_catkin_package) CMakeLists.txt:10 (catkin_package) […] --- snap --- dev-ros/tf2_eigen-0.5.13 complains about Eigen: --- snip --- […] -- catkin 0.7.2 -- Using these message generators: gencpp;geneus;genlisp;gennodejs;genpy -- Found PkgConfig: /usr/bin/x86_64-pc-linux-gnu-pkg-config (found version "0.28") -- Checking for module 'eigen3' -- Found eigen3, version 3.2.8 CMake Warning at //usr/share/cmake_modules/cmake/Modules/FindEigen.cmake:62 (message): The FindEigen.cmake Module in the cmake_modules package is deprecated. Please use the FindEigen3.cmake Module provided with Eigen. Change instances of find_package(Eigen) to find_package(Eigen3). Check the FindEigen3.cmake Module for the resulting CMake variable names. Call Stack (most recent call first): CMakeLists.txt:10 (find_package) -- Found Eigen: /usr/include/eigen3 -- Eigen found (include: /usr/include/eigen3) CMake Error at /usr/share/catkin/cmake/catkin_package.cmake:163 (message): catkin_package() DEPENDS on 'eigen' which must be find_package()-ed before. If it is a catkin package it can be declared as CATKIN_DEPENDS instead without find_package()-ing it. Call Stack (most recent call first): /usr/share/catkin/cmake/catkin_package.cmake:102 (_catkin_package) CMakeLists.txt:16 (catkin_package) […] --- snap --- Since I was able to install the packages before the changes in #595004 and the missing packages differ, I assume that this is a more general problem (e.g., incomplete CMake search path of some kind). Nonetheless, I will try to offer more information for each package individually (see upcoming comments below). Reproducible: Always Steps to Reproduce: 1. Run "emerge -avt1O /usr/share/*/package.xml" as suggested in #595004. 2. Try to re-emerge packages that might be problematic (e.g., dev-cpp/eigen, dev-ros/bondpy). Try to run the command from above again, without making any progress. > emerge --info Portage 2.3.0 (python 3.4.3-final-0, default/linux/amd64/13.0/systemd, gcc-4.9.3, glibc-2.22-r4, 4.8.0-gentoo x86_64) ================================================================= System uname: Linux-4.8.0-gentoo-x86_64-Intel-R-_Core-TM-_i5-6200U_CPU_@_2.30GHz-with-gentoo-2.2 KiB Mem: 15829636 total, 6716692 free KiB Swap: 0 total, 0 free Timestamp of repository gentoo: Mon, 10 Oct 2016 06:45:01 +0000 sh bash 4.3_p48 ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1 app-shells/bash: 4.3_p48::gentoo dev-java/java-config: 2.2.0-r3::gentoo dev-lang/perl: 5.22.2::gentoo dev-lang/python: 2.7.10-r1::gentoo, 3.4.3-r1::gentoo dev-util/cmake: 3.5.2-r1::gentoo dev-util/pkgconfig: 0.28-r2::gentoo sys-apps/baselayout: 2.2::gentoo sys-apps/openrc: 0.21.7::gentoo sys-apps/sandbox: 2.10-r1::gentoo sys-devel/autoconf: 2.13::gentoo, 2.69::gentoo sys-devel/automake: 1.11.6-r1::gentoo, 1.14.1::gentoo, 1.15::gentoo sys-devel/binutils: 2.25.1-r1::gentoo sys-devel/gcc: 4.9.3::gentoo sys-devel/gcc-config: 1.7.3::gentoo sys-devel/libtool: 2.4.6::gentoo sys-devel/make: 4.1-r1::gentoo sys-kernel/linux-headers: 4.3::gentoo (virtual/os-headers) sys-libs/glibc: 2.22-r4::gentoo Repositories: gentoo location: /portage sync-type: rsync sync-uri: rsync://rsync.de.gentoo.org/gentoo-portage priority: -1000 sync-rsync-extra-opts: --exclude-from=/etc/portage/rsync_excludes LocalOverlay location: /usr/local/portage masters: gentoo Installed sets: @rsnapshot_scripts_deps ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/portage/distfiles" EMERGE_DEFAULT_OPTS="--keep-going --quiet-build=y" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs clean-logs compressdebug config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://mirror.netcologne.de/gentoo/ http://distfiles.gentoo.org" LANG="en_US.UTF-8" LC_ALL="en_US.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j5" PKGDIR="/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_EXTRA_OPTS="--exclude-from=/etc/portage/rsync_excludes" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="acl amd64 berkdb bzip2 cli cracklib crypt cxx dri fortran gdbm iconv ipv6 mmx mmxext modules multilib ncurses nls nptl openmp pam pcre readline seccomp session sse sse2 ssl systemd tcpd udev unicode xattr xinerama zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx f16c fma3 mmx mmxext mpx popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="evdev keyboard mouse synaptics" KERNEL="linux" L10N="en de" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="pdfimport" LINGUAS="en de" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby21" SANE_BACKENDS="pixma" USERLAND="GNU" VIDEO_CARDS="intel vesa" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" USE_PYTHON="2.7 3.4" Unset: CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS
> eix '-I*' -C ros --format '<installedversions:NAMEVERSION>' dev-ros/actionlib-1.11.6 dev-ros/actionlib_msgs-1.12.5 dev-ros/actionlib_tutorials-0.1.8 dev-ros/angles-1.9.10 dev-ros/bond-1.7.17 dev-ros/bondcpp-1.7.17 dev-ros/bondpy-1.7.17 dev-ros/camera_calibration-1.12.19 dev-ros/camera_calibration_parsers-1.11.11 dev-ros/camera_info_manager-1.11.11 dev-ros/class_loader-0.3.5 dev-ros/cmake_modules-0.4.0 dev-ros/collada_parser-1.12.4 dev-ros/collada_urdf-1.12.4 dev-ros/combined_robot_hw-0.11.1 dev-ros/combined_robot_hw_tests-0.11.1 dev-ros/compressed_depth_image_transport-1.9.5 dev-ros/compressed_image_transport-1.9.5 dev-ros/control_msgs-1.4.0 dev-ros/control_toolbox-1.15.0 dev-ros/controller_interface-0.11.1 dev-ros/controller_manager-0.11.1 dev-ros/controller_manager_msgs-0.11.1 dev-ros/controller_manager_tests-0.11.1 dev-ros/convex_decomposition-0.1.11 dev-ros/cpp_common-0.6.1 dev-ros/cv_bridge-1.12.2 dev-ros/depth_image_proc-1.12.19 dev-ros/diagnostic_aggregator-1.8.10 dev-ros/diagnostic_analysis-1.8.10 dev-ros/diagnostic_common_diagnostics-1.8.10 dev-ros/diagnostic_msgs-1.12.5 dev-ros/diagnostic_updater-1.8.10 dev-ros/dynamic_reconfigure-1.5.44 dev-ros/eigen_conversions-1.11.8 dev-ros/eigen_stl_containers-0.1.6 dev-ros/filters-1.7.4-r1 dev-ros/gencpp-0.5.5 dev-ros/geneus-2.2.5 dev-ros/genlisp-0.4.16 dev-ros/genmsg-0.5.8 dev-ros/gennodejs-1.0.3 dev-ros/genpy-0.6.2 dev-ros/geometric_shapes-0.5.1 dev-ros/geometry_msgs-1.12.5 dev-ros/hardware_interface-0.11.1 dev-ros/image_geometry-1.12.2 dev-ros/image_proc-1.12.19 dev-ros/image_publisher-1.12.19 dev-ros/image_rotate-1.12.19 dev-ros/image_transport-1.11.11 dev-ros/image_view-1.12.19 dev-ros/interactive_marker_tutorials-0.10.1 dev-ros/interactive_markers-1.11.3 dev-ros/ivcon-0.1.6 dev-ros/joint_limits_interface-0.11.1-r1 dev-ros/joint_state_publisher-1.12.4 dev-ros/kdl_conversions-1.11.8 dev-ros/kdl_parser-1.12.4 dev-ros/kdl_parser_py-1.12.4 dev-ros/laser_assembler-1.7.4 dev-ros/laser_filters-1.8.3 dev-ros/laser_geometry-1.6.4 dev-ros/librviz_tutorial-0.10.1 dev-ros/map_msgs-1.13.0 dev-ros/message_filters-1.12.5 dev-ros/message_generation-0.4.0 dev-ros/message_runtime-0.4.12 dev-ros/mk-1.13.4 dev-ros/nav_msgs-1.12.5 dev-ros/nodelet-1.9.6 dev-ros/nodelet_topic_tools-1.9.6 dev-ros/nodelet_tutorial_math-0.1.8 dev-ros/opencv_tests-1.12.2 dev-ros/pcl_conversions-0.2.1-r1 dev-ros/pcl_msgs-0.2.0 dev-ros/pcl_ros-1.4.1-r2 dev-ros/pluginlib-1.10.4 dev-ros/pluginlib_tutorials-0.1.8 dev-ros/polled_camera-1.11.11 dev-ros/pr2_description-1.12.0 dev-ros/python_qt_binding-0.3.1 dev-ros/qt_dotgraph-0.3.3 dev-ros/qt_gui-0.3.3 dev-ros/qt_gui_app-0.3.3 dev-ros/qt_gui_cpp-0.3.3 dev-ros/qt_gui_py_common-0.3.3 dev-ros/random_numbers-0.3.1 dev-ros/realtime_tools-1.9.2 dev-ros/resource_retriever-1.12.2 dev-ros/robot_state_publisher-1.13.2-r1 dev-ros/rosbag-1.12.5 dev-ros/rosbag_storage-1.12.5 dev-ros/rosbash-1.13.4 dev-ros/rosboost_cfg-1.13.4 dev-ros/rosbuild-1.13.4 dev-ros/rosclean-1.13.4 dev-ros/rosconsole-1.12.5 dev-ros/rosconsole_bridge-0.4.4 dev-ros/roscpp-1.12.5 dev-ros/roscpp_serialization-0.6.1 dev-ros/roscpp_traits-0.6.1 dev-ros/roscpp_tutorials-0.7.0 dev-ros/roscreate-1.13.4 dev-ros/rosgraph-1.12.5 dev-ros/rosgraph_msgs-1.11.2 dev-ros/roslang-1.13.4 dev-ros/roslaunch-1.12.5 dev-ros/roslib-1.13.4 dev-ros/roslint-0.11.0 dev-ros/roslisp-1.9.20 dev-ros/roslz4-1.12.5 dev-ros/rosmake-1.13.4 dev-ros/rosmaster-1.12.5 dev-ros/rosmsg-1.12.5 dev-ros/rosnode-1.12.5 dev-ros/rosout-1.12.5 dev-ros/rospack-2.3.1 dev-ros/rosparam-1.12.5 dev-ros/rospy-1.12.5 dev-ros/rospy_tutorials-0.7.0 dev-ros/rosservice-1.12.5 dev-ros/rostest-1.12.5 dev-ros/rostime-0.6.1 dev-ros/rostopic-1.12.5 dev-ros/rosunit-1.13.4 dev-ros/roswtf-1.12.5 dev-ros/rqt_action-0.4.2 dev-ros/rqt_bag-0.4.2 dev-ros/rqt_bag_plugins-0.4.2 dev-ros/rqt_console-0.4.2 dev-ros/rqt_controller_manager-0.11.1 dev-ros/rqt_dep-0.4.2 dev-ros/rqt_graph-0.4.2 dev-ros/rqt_gui-0.3.1 dev-ros/rqt_gui_cpp-0.3.1 dev-ros/rqt_gui_py-0.3.1 dev-ros/rqt_image_view-0.4.2 dev-ros/rqt_launch-0.4.2 dev-ros/rqt_logger_level-0.4.2 dev-ros/rqt_moveit-0.5.4 dev-ros/rqt_msg-0.4.2 dev-ros/rqt_nav_view-0.5.4 dev-ros/rqt_plot-0.4.2 dev-ros/rqt_pose_view-0.5.4 dev-ros/rqt_publisher-0.4.2 dev-ros/rqt_py_common-0.4.2 dev-ros/rqt_py_console-0.4.2 dev-ros/rqt_reconfigure-0.4.2 dev-ros/rqt_robot_dashboard-0.5.4 dev-ros/rqt_robot_monitor-0.5.4 dev-ros/rqt_robot_steering-0.5.4 dev-ros/rqt_runtime_monitor-0.5.4 dev-ros/rqt_rviz-0.5.4 dev-ros/rqt_service_caller-0.4.2 dev-ros/rqt_shell-0.4.2 dev-ros/rqt_srv-0.4.2 dev-ros/rqt_tf_tree-0.5.4 dev-ros/rqt_top-0.4.2 dev-ros/rqt_topic-0.4.2 dev-ros/rqt_web-0.4.2 dev-ros/rviz-1.12.1-r1 dev-ros/rviz_plugin_tutorials-0.10.1 dev-ros/rviz_python_tutorial-0.10.1 dev-ros/self_test-1.8.10 dev-ros/sensor_msgs-1.12.5 dev-ros/shape_msgs-1.12.5 dev-ros/smach-2.0.0 dev-ros/smach_msgs-2.0.0 dev-ros/smach_ros-2.0.0 dev-ros/smclib-1.7.17 dev-ros/std_msgs-0.5.10 dev-ros/std_srvs-1.11.2 dev-ros/stereo_image_proc-1.12.19-r1 dev-ros/stereo_msgs-1.12.5 dev-ros/test_bond-1.7.17 dev-ros/test_diagnostic_aggregator-1.8.10 dev-ros/test_nodelet-1.9.6 dev-ros/test_nodelet_topic_tools-1.9.6 dev-ros/test_rosbag-1.12.5 dev-ros/test_rosbag_storage-1.12.5 dev-ros/test_roscpp-1.12.5 dev-ros/test_rosgraph-1.12.5 dev-ros/test_roslaunch-1.12.5 dev-ros/test_roslib_comm-1.12.5 dev-ros/test_rosmaster-1.12.5 dev-ros/test_rosparam-1.12.5 dev-ros/test_rospy-1.12.5 dev-ros/test_rosservice-1.12.5 dev-ros/tf-1.11.8 dev-ros/tf2-0.5.13 dev-ros/tf2_eigen-0.5.13 dev-ros/tf2_geometry_msgs-0.5.13 dev-ros/tf2_kdl-0.5.13 dev-ros/tf2_msgs-0.5.13 dev-ros/tf2_py-0.5.13 dev-ros/tf2_ros-0.5.13-r1 dev-ros/tf_conversions-1.11.8 dev-ros/theora_image_transport-1.9.5 dev-ros/topic_tools-1.12.5 dev-ros/trajectory_msgs-1.12.5 dev-ros/transmission_interface-0.11.1 dev-ros/turtle_actionlib-0.1.8 dev-ros/turtlesim-0.7.0 dev-ros/urdf-1.12.4 dev-ros/urdf_parser_plugin-1.12.4-r1 dev-ros/urdf_tutorial-0.2.4 dev-ros/visualization_marker_tutorials-0.10.1 dev-ros/visualization_msgs-1.12.5 dev-ros/xacro-1.11.1 dev-ros/xmlrpcpp-1.12.5 ros-meta/bond_core-1.7.17 ros-meta/common_msgs-1.12.5 ros-meta/common_tutorials-0.1.8 ros-meta/desktop-1.3.0 ros-meta/diagnostics-1.8.10 ros-meta/executive_smach-2.0.0 ros-meta/geometry-1.11.8 ros-meta/image_common-1.11.11 ros-meta/image_pipeline-1.12.19 ros-meta/image_transport_plugins-1.9.5 ros-meta/laser_pipeline-1.6.2 ros-meta/nodelet_core-1.9.6 ros-meta/perception-1.3.0 ros-meta/perception_pcl-1.4.1 ros-meta/qt_gui_core-0.3.3 ros-meta/robot-1.3.0 ros-meta/robot_model-1.12.4 ros-meta/ros-1.13.4 ros-meta/ros_base-1.3.0 ros-meta/ros_comm-1.12.5 ros-meta/ros_control-0.11.1 ros-meta/ros_core-1.3.0 ros-meta/ros_tutorials-0.7.0 ros-meta/roscpp_core-0.6.1 ros-meta/rqt-0.3.1 ros-meta/rqt_common_plugins-0.4.2 ros-meta/rqt_robot_plugins-0.5.4 ros-meta/vision_opencv-1.12.2 ros-meta/visualization_tutorials-0.10.1 ros-meta/viz-1.3.0
Created attachment 449854 [details, diff] make dev-ros/controller_manager explicitly find_package(Boost) To investigate the problems a little, I ran CMake manually from the BUILD_DIR's of the failed emerge runs. I found that dev-ros/controller_manager's missing boost problem seems fixable by explicitly searching for "Boost" and making the "catkin_package(…)" call explicitly use "Boost" instead of "boost". (Please note that I did not test the patch together with the ebuild, but merely modified CMakeLists.txt, ran "cmake .." manually, and then created the patch.)
Created attachment 449856 [details, diff] Make dev-ros/tf2_eigen use "Eigen" instead of "eigen" For dev-ros/tf2_eigen's problem with Eigen, I had to make the "catkin_package(…)" call depend on "Eigen" instead of "eigen", and also give CMake several paths to various *Config.cmake files: --- snip --- cmake .. -Dcmake_modules_DIR=/usr/share/cmake_modules/cmake/ -Dgeometry_msgs_DIR=/usr/share/geometry_msgs/cmake/ -Dtf2_DIR=/usr/share/tf2/cmake/ --- snap --- Please note that "cmake_modules" is really a ROS package. It is not something CMake specific. Error: --- snip --- CMake Error at /usr/share/catkin/cmake/catkin_package.cmake:163 (message): catkin_package() DEPENDS on 'eigen' which must be find_package()-ed before. If it is a catkin package it can be declared as CATKIN_DEPENDS instead without find_package()-ing it. --- snap ---
When I tried to emerge the problematic packages today, everything installed as they should. After reporting this issue I installed dev-util/catkin-0.7.4 and ran "emerge -avt1 --keep-going $(eix -I -C ros --only-names)". Closing this issue.
