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Bug 596690 - sci-libs/scipy-0.18.1 - src_compile(): ImportError: libblas.so.0: cannot open shared object file: No such file or directory
Summary: sci-libs/scipy-0.18.1 - src_compile(): ImportError: libblas.so.0: cannot open...
Status: RESOLVED WORKSFORME
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2016-10-09 14:16 UTC by Anton Bolshakov
Modified: 2017-12-11 16:28 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,5.70 KB, text/plain)
2016-10-09 14:16 UTC, Anton Bolshakov
Details

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Description Anton Bolshakov 2016-10-09 14:16:28 UTC
Created attachment 449668 [details]
build.log

emerge --info 
Portage 2.3.0 (python 2.7.10-final-0, hardened/linux/amd64, gcc-4.9.3, glibc-2.22-r4, 4.4.8-pentoo-r2 x86_64)
=================================================================
System uname: Linux-4.4.8-pentoo-r2-x86_64-Intel-R-_Core-TM-_i5-3320M_CPU_@_2.60GHz-with-gentoo-2.2
KiB Mem:     7981336 total,    443972 free
KiB Swap:    4194300 total,   4194248 free
Timestamp of repository gentoo: Sun, 09 Oct 2016 13:30:01 +0000
sh bash 4.3_p48
ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1
app-shells/bash:          4.3_p48::gentoo
dev-java/java-config:     2.2.0-r3::gentoo
dev-lang/perl:            5.22.2::gentoo
dev-lang/python:          2.7.10-r1::gentoo, 3.4.3-r1::gentoo
dev-util/cmake:           3.5.2-r1::gentoo
dev-util/pkgconfig:       0.28-r2::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/openrc:          0.21.7::gentoo
sys-apps/sandbox:         2.10-r1::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69::gentoo
sys-devel/automake:       1.14.1::gentoo, 1.15::gentoo
sys-devel/binutils:       2.25.1-r1::gentoo
sys-devel/gcc:            4.9.3::gentoo
sys-devel/gcc-config:     1.7.3::gentoo
sys-devel/libtool:        2.4.6::gentoo
sys-devel/make:           4.1-r1::gentoo
sys-kernel/linux-headers: 4.3::gentoo (virtual/os-headers)
sys-libs/glibc:           2.22-r4::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000

steam-overlay
    location: /var/lib/layman/steam-overlay
    masters: gentoo
    priority: 0

pentoo
    location: /var/lib/layman/pentoo
    masters: gentoo
    priority: 1

local-overlay
    location: /usr/local/portage
    masters: gentoo
    priority: 2

ABI="amd64"
ABI_X86="64"
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA OPERA-12 NVIDIA-CUDA PUEL AdobeFlash-11.x Google-TOS dlj-1.1 google-chrome Oracle-BCLA-JavaSE Intel-SDP skype-4.0.0.7-copyright baudline"
ACCEPT_PROPERTIES="*"
ACCEPT_RESTRICT="*"
ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci"
ANDROID_HOME="/opt/android-sdk-update-manager"
ANDROID_SWT="/usr/share/swt-3.7/lib"
ANT_HOME="/usr/share/ant"
APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias"
ARCH="amd64"
AUTOCLEAN="yes"
BOOTSTRAP_USE="cxx unicode internal-glib python_targets_python3_4 python_targets_python2_7 multilib hardened pax_kernel pic xtpax -jit -orc"
CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author"
CAMERAS="ptp2"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CFLAGS_amd64="-m64"
CFLAGS_x32="-mx32"
CFLAGS_x86="-m32"
CHOST="x86_64-pc-linux-gnu"
CHOST_amd64="x86_64-pc-linux-gnu"
CHOST_x32="x86_64-pc-linux-gnux32"
CHOST_x86="i686-pc-linux-gnu"
CLEAN_DELAY="5"
COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog"
COLLISION_IGNORE="/lib/modules/* *.py[co] *$py.class */dropin.cache"
COLORFGBG="15;0"
CONFIG_PROTECT="/etc /etc/stunnel/stunnel.conf /opt/sonar/conf /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3"
CXXFLAGS="-march=native -O2 -pipe"
DBUS_SESSION_BUS_ADDRESS="unix:abstract=/tmp/dbus-npggb4aA9l,guid=e20ed66fe2545a6154ec3b2e57f8d771"
DEFAULT_ABI="amd64"
DESKTOP_SESSION="/usr/share/xsessions/plasma"
DISPLAY=":0"
DISTDIR="/usr/portage/distfiles"
EDITOR="/usr/bin/mcedit"
ELIBC="glibc"
EMERGE_DEFAULT_OPTS=" --ask-enter-invalid --keep-going=y --binpkg-respect-use=y --tree --verbose --with-bdeps=y --autounmask=n --buildpkg-exclude "sys-kernel/compat-drivers sys-kernel/ax88179_178a x11-drivers/ati-drivers x11-drivers/nvidia-drivers sys-fs/zfs-kmod sys-kernel/spl                   sys-power/bbswitch pentoo/pentoo-installer x11-drivers/xf86-video-virtualbox app-emulation/virtualbox-guest-additions                    app-emulation/virtualbox-modules app-emulation/vmware-modules app-emulation/open-vm-tools-kmod sys-kernel/genkernel                  sys-kernel/pentoo-sources dev-python/twisted-web net-analyzer/metasploit sci-libs/lapack-reference x11-base/xorg-drivers app-admin/genmenu" --usepkg-exclude "sys-kernel/compat-drivers sys-kernel/ax88179_178a x11-drivers/ati-drivers x11-drivers/nvidia-drivers sys-fs/zfs-kmod sys-kernel/spl                         sys-power/bbswitch pentoo/pentoo-installer x11-drivers/xf86-video-virtualbox app-emulation/virtualbox-guest-additions                        app-emulation/virtualbox-modules app-emulation/vmware-modules app-emulation/open-vm-tools-kmod sys-kernel/genkernel                  sys-kernel/pentoo-sources dev-python/twisted-web net-analyzer/metasploit sci-libs/lapack-reference x11-base/xorg-drivers app-admin/genmenu""
EMERGE_WARNING_DELAY="10"
EPREFIX=""
EROOT="/"
FCFLAGS="-O2 -pipe"
Comment 1 Anton Bolshakov 2016-10-09 14:23:59 UTC
FYI
sci-libs/cblas-reference-20030223-r6:

/usr/lib64/blas/reference/libcblas.a
/usr/lib64/blas/reference/libcblas.so -> libcblas.so.0.0.0
/usr/lib64/blas/reference/libcblas.so.0 -> libcblas.so.0.0.0
/usr/lib64/blas/reference/libcblas.so.0.0.0
Comment 2 Anton Bolshakov 2016-10-09 23:38:46 UTC
could be a dup of bug #595712 or bug #546858. The error is similar but it can't find .so file this time.
Comment 3 Anton Bolshakov 2017-12-11 16:28:00 UTC
FYI, the error was gone after I have upgraded the following libraries 

sci-libs/blas-reference-20161223
virtual/blas-3.6

However, I'm not sure what was the reason of the error. So I'm closing this bug for now.