-- Found PkgConfig: /usr/bin/pkg-config (found version "0.28") -- Checking for module 'lapack' -- No package 'lapack' found -- No PkgConfig configuration for LAPACK found; starting more extensive search. -- Checking for module 'blas' $ cat emerge-info.txt ----------------------------------------------------------------- This is an unstable amd64 chroot image (named amd64-gnome-unstable_20161007-172116) at a hardened host acting as a tinderbox. ----------------------------------------------------------------- USE flags ... ... in make.conf: USE=" pax_kernel xtpax -cdinstall -oci8 -bindist ssp bugzilla cddb corefonts declarative dvd egl eglfs ext4 gcj gif graphtft gstreamer -gtk3 gudev help -ibus imlib ithreads jadetex javaxml -kerberos lapack libkms melt mng mp3 mpeg2 mpeg3 mssql multitarget mysqli nss -odbc openexr osc pdo printsupport python qml qt4 -rdoc sasl sddm sdl smime snmp sockets sourceview -sslv2 swscale -system-libevent theora traceroute ufed v4l video vlc vorbis webkit widgets X xa xinerama xinetd xkb" ... in /etc/portage/package.use/*: mail-mta/ssmtp ssl mta net-misc/wget ssl app-crypt/pinentry -qt4 app-editors/emacs -dbus -svg -ssl -gtk -gtk3 app-text/xmlto -latex dev-libs/boehm-gc threads dev-libs/libpcre pcre16 dev-lang/python threads dev-qt/qtgui egl eglfs net-nds/openldap -sasl dev-util/cmake -qt4 -qt5 dev-vcs/git -perl media-libs/mesa -vaapi sys-apps/kmod tools sys-libs/ncurses -gpm net-misc/iputils -caps -filecaps entries in /etc/portage/package.unmask/*: ~sys-apps/sandbox-2.11 media-video/ffmpeg sys-devel/gcc:6.2.0 ----------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-4.9.3 [2] x86_64-pc-linux-gnu-6.2.0 * llvm-config --version: 3.8.1 Available Python interpreters, in order of preference: [1] python3.4 [2] python2.7 (fallback) ----------------------------------------------------------------- Portage 2.3.1 (python 3.4.5-final-0, default/linux/amd64/13.0/desktop/gnome, gcc-6.2.0, glibc-2.23-r2, 4.7.6-hardened x86_64) ================================================================= System Settings ================================================================= System uname: Linux-4.7.6-hardened-x86_64-Intel-R-_Core-TM-_i7-3930K_CPU_@_3.20GHz-with-gentoo-2.3 KiB Mem: 65285480 total, 3307400 free KiB Swap: 67108860 total, 67095304 free Timestamp of repository gentoo: Sat, 08 Oct 2016 14:10:28 +0000 sh bash 4.4 ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1 app-shells/bash: 4.4::gentoo dev-lang/perl: 5.24.0-r1::gentoo dev-lang/python: 2.7.12::gentoo, 3.4.5::gentoo dev-util/cmake: 3.6.2::gentoo dev-util/pkgconfig: 0.28-r2::gentoo sys-apps/baselayout: 2.3::gentoo sys-apps/openrc: 0.22.2::gentoo sys-apps/sandbox: 2.11-r2::gentoo sys-devel/autoconf: 2.13::gentoo, 2.69-r2::gentoo sys-devel/automake: 1.13.4-r1::gentoo, 1.14.1::gentoo, 1.15-r2::gentoo sys-devel/binutils: 2.25.1-r1::gentoo, 2.26.1::gentoo sys-devel/gcc: 4.9.3::gentoo, 6.2.0-r1::gentoo sys-devel/gcc-config: 1.8-r1::gentoo sys-devel/libtool: 2.4.6-r2::gentoo sys-devel/make: 4.2.1::gentoo sys-kernel/linux-headers: 4.7::gentoo (virtual/os-headers) sys-libs/glibc: 2.23-r2::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: 1 local location: /usr/local/portage masters: gentoo priority: 2 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/var/tmp/distfiles" EMERGE_DEFAULT_OPTS="--verbose --verbose-conflicts --color=n --nospinner --tree --quiet-build" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox parallel-fetch preserve-libs protect-owned sandbox sfperms strict test-fail-continue unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j1" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="X a52 aac acl acpi alsa amd64 berkdb bluetooth branding bugzilla bzip2 cairo cdda cddb cdr cli colord consolekit corefonts cracklib crypt cups cxx dbus declarative dri dts dvd dvdr eds egl eglfs emboss encode evo exif ext4 fam firefox flac fortran gcj gdbm gif glamor gnome gnome-keyring gnome-online-accounts gpm graphtft gstreamer gtk gudev help iconv imlib introspection ipv6 ithreads jadetex javaxml jpeg lapack lcms ldap libkms libnotify libsecret mad melt mmx mmxext mng modules mp3 mp4 mpeg mpeg2 mpeg3 mssql multilib multitarget mysqli nautilus ncurses nls nptl nss ogg openexr opengl openmp osc pam pango pax_kernel pcre pdf pdo png policykit ppds printsupport pulseaudio python qml qt3support qt4 readline sasl sddm sdl seccomp session smime snmp sockets sourceview spell sse sse2 ssl ssp startup-notification svg swscale tcpd theora tiff traceroute tracker truetype udev udisks ufed unicode upower usb v4l video vlc vorbis webkit widgets wxwidgets x264 xa xattr xcb xinerama xinetd xkb xml xtpax xv xvid zlib" ABI_X86="32 64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" L10N="es-ES ks ms sa syc te ur-PK" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Created attachment 449568 [details] emerge-history.txt
Created attachment 449570 [details] environment
Created attachment 449572 [details] sci-libs:ceres-solver-1.11.0:20161008-173521.log
Looks like eselect may not have worked properly. What do eselect lapack list pkg-config --libs lapack say?
(In reply to Francois Bissey from comment #4) tinderbox@mr-fox ~ $ sudo chroot amd64-gnome-unstable_20161007-172116 mr-fox / # eselect lapack list Installed LAPACK for library directory lib64 [1] reference * mr-fox / # pkg-config --libs lapack -llapack -lblas
I think I almost woke up now! You are doing a multilib build of ceres-solver (abi_x86_32 and abi_x86_64). But lapack is only found for abi_x86_64. lapack wasn't installed multilib (can you check that?). It is a bit of a dependency problem here.
(In reply to Francois Bissey from comment #6) yes, mgorny asked me to tinderbox bug #542530 so you're probably right.
OK but I don't believe lapack-reference is currently building multi-abi - I don't think they are any multi-abi lapack in the main tree. There are some in the science overlay. So any ebuild in the main tree requiring a multi-abi lapack is effectively depending on the science overlay.
commit 3c9b9c373bede1d53c75fa08a034395027b3be54 Author: Justin Lecher <jlec@gentoo.org> Date: Sun Jan 22 10:20:27 2017 +0000 sci-libs/ceres-solver: Restrict non native X86 to supporting USE Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=593954 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=596560 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=606776 Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org> https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3c9b9c373bede1d53c75fa08a034395027b3be54 commit bc76ed3e0b217950cd928793e7742b9bf2899154 Author: Justin Lecher <jlec@gentoo.org> Date: Sun Jan 22 10:13:51 2017 +0000 sci-libs/cxsparse: Add 32bit support Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org> https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=bc76ed3e0b217950cd928793e7742b9bf2899154 commit 899170263f29d4bcc0f6e8e8a79ae3808c064c48 Author: Justin Lecher <jlec@gentoo.org> Date: Sun Jan 22 10:08:20 2017 +0000 sci-libs/suitesparseconfig: Add 32bit support Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org> https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=899170263f29d4bcc0f6e8e8a79ae3808c064c48
