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Bug 595546 - sci-astronomy/casacore-2.1.0 : /.../Mutex.cc:86:74: error: throw will always call terminate() [-Werror=terminate]
Summary: sci-astronomy/casacore-2.1.0 : /.../Mutex.cc:86:74: error: throw will always ...
Status: RESOLVED TEST-REQUEST
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Astronomy project
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2016-09-29 16:56 UTC by Toralf Förster
Modified: 2019-06-28 01:35 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-history.txt (emerge-history.txt,150.59 KB, text/plain)
2016-09-29 16:56 UTC, Toralf Förster
Details
environment (environment,156.70 KB, text/plain)
2016-09-29 16:56 UTC, Toralf Förster
Details
sci-astronomy:casacore-2.1.0:20160929-004506.log (sci-astronomy:casacore-2.1.0:20160929-004506.log,99.28 KB, text/plain)
2016-09-29 16:56 UTC, Toralf Förster
Details
emerge-info.txt (emerge-info.txt,14.07 KB, text/plain)
2017-07-07 15:20 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,17.17 KB, text/plain)
2017-07-07 15:20 UTC, Toralf Förster
Details
environment (environment,166.38 KB, text/plain)
2017-07-07 15:20 UTC, Toralf Förster
Details
etc.portage.tbz2 (etc.portage.tbz2,21.86 KB, application/x-bzip)
2017-07-07 15:20 UTC, Toralf Förster
Details
logs.tbz2 (logs.tbz2,6.32 KB, application/x-bzip)
2017-07-07 15:20 UTC, Toralf Förster
Details
sci-astronomy:casacore-2.3.0:20170707-053633.log (sci-astronomy:casacore-2.3.0:20170707-053633.log,117.58 KB, text/plain)
2017-07-07 15:20 UTC, Toralf Förster
Details
temp.tbz2 (temp.tbz2,40.76 KB, application/x-bzip)
2017-07-07 15:21 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2016-09-29 16:56:36 UTC
cd /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build/casa && /usr/bin/x86_64-pc-linux-gnu-g++  -DCFITSIO_VERSION_MAJOR=3 -DCFITSIO_VERSION_MINOR=360 -DHAVE_HDF5 -DHAVE_READLINE -DUSE_THREADS -DWCSLIB_VERSION_MAJOR=5 -DWCSLIB_VERSION_MINOR=15 -Dcasa_casa_EXPORTS -I/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0 -I/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build   -DNDEBUG -fcx-fortran-rules -Werror=terminate -march=native -O2 -pipe  -fopenmp -pthread -fPIC   -o CMakeFiles/casa_casa.dir/OS/Mutex.cc.o -c /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0/casa/OS/Mutex.cc
/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0/casa/OS/Mutex.cc: In destructor ‘casa::Mutex::~Mutex()’:
/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0/casa/OS/Mutex.cc:86:74: error: throw will always call terminate() [-Werror=terminate]
     if (error != 0) throw SystemCallError ("pthread_mutex_destroy", error);
                                                                          ^
/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0/casa/OS/Mutex.cc:86:74: note: in C++11 destructors default to noexcept


$ cat emerge-info.txt
  -----------------------------------------------------------------

  This is an unstable amd64 chroot image (named amd64-plasma-libressl-unstable_20160924-204156) at a hardened host acting as a tinderbox.

  -----------------------------------------------------------------
  USE flags ...

  ... in make.conf:
USE="  -openssl -gnutls libressl pax_kernel xtpax -cdinstall -oci8 -bindist ssp -apache -apache2 avformat bzip2 cgi cgroups compat contrib corefonts -custom-cflags ecc evdev fitz freetds ftp gcj gpg hdf5 hpn -icu latex libinput llvm logrotate lzma melt minizip mp4 mpeg mpeg3 mta multimedia multitarget nscd objc offensive -openexr openmpi php postgres -python qml qt4 qt5 rdoc -scripts scrypt server ssl -sslv2 ssp system-harfbuzz -system-libevent -system-libvpx timidity tools traceroute uml v4l2 wav wayland webkit -x264 -xa xinerama xmlreader xmp xscreensaver xslt xvfb zenmap"

  ... in /etc/portage/package.use/*:
  mail-mta/ssmtp      ssl mta
  net-misc/wget       ssl
  app-crypt/pinentry  -qt4
  app-editors/emacs   -dbus -svg -ssl -gtk -gtk3
  app-text/xmlto      -latex
  dev-libs/boehm-gc   threads
  dev-libs/libpcre    pcre16
  dev-lang/python     threads
  dev-qt/qtgui        egl eglfs
  net-nds/openldap    -sasl
  dev-util/cmake      -qt4 -qt5
  dev-vcs/git         -perl
  media-libs/mesa     -vaapi
  sys-apps/kmod       tools
  <=net-misc/openssh-7.3_p1-r2    -hpn
  net-misc/iputils -caps -filecaps
  dev-qt/qtsql -mysql
  >=dev-qt/qtcore-5.6.1 icu
  mail-mta/ssmtp libressl -gnutls

  entries in /etc/portage/package.unmask/*:
  media-video/ffmpeg
  sys-devel/gcc:6.2.0
  -----------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-4.9.3
 [2] x86_64-pc-linux-gnu-6.2.0 *
llvm-config --version:
3.8.1

Available Python interpreters:
  [1]   python2.7
  [2]   python3.4 *

  -----------------------------------------------------------------

Portage 2.2.28 (python 3.4.5-final-0, default/linux/amd64/13.0/desktop/plasma, gcc-6.2.0, glibc-2.22-r4, 4.7.5-hardened x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-4.7.5-hardened-x86_64-Intel-R-_Core-TM-_i7-3930K_CPU_@_3.20GHz-with-gentoo-2.2
KiB Mem:    65285480 total,  17443936 free
KiB Swap:   67108860 total,  67108860 free
Timestamp of repository gentoo: Wed, 28 Sep 2016 22:14:36 +0000
sh bash 4.3_p46-r1
ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1
app-shells/bash:          4.3_p46-r1::gentoo
dev-lang/perl:            5.22.2::gentoo
dev-lang/python:          2.7.12::gentoo, 3.4.5::gentoo
dev-util/cmake:           3.6.2::gentoo
dev-util/pkgconfig:       0.28-r2::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/openrc:          0.21.7::gentoo
sys-apps/sandbox:         2.10-r1::gentoo
sys-devel/autoconf:       2.69::gentoo
sys-devel/automake:       1.13.4-r1::gentoo, 1.14.1::gentoo, 1.15::gentoo
sys-devel/binutils:       2.25.1-r1::gentoo
sys-devel/gcc:            4.9.3::gentoo, 6.2.0-r1::gentoo
sys-devel/gcc-config:     1.7.3::gentoo
sys-devel/libtool:        2.4.6::gentoo
sys-devel/make:           4.1-r1::gentoo
sys-kernel/linux-headers: 4.3::gentoo (virtual/os-headers)
sys-libs/glibc:           2.22-r4::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: 1

local
    location: /usr/local/portage
    masters: gentoo
    priority: 2

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /var/rancid/.cloginrc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-Werror=terminate -march=native -O2 -pipe"
DISTDIR="/var/tmp/distfiles"
EMERGE_DEFAULT_OPTS="--verbose --verbose-conflicts --color=n --nospinner --tree --quiet-build"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox parallel-fetch preserve-libs protect-owned sandbox sfperms strict test-fail-continue unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="X a52 aac acl acpi alsa amd64 avformat berkdb bluetooth branding bzip2 cairo cdda cdr cgi cgroups cli compat consolekit contrib corefonts cracklib crypt cups cxx dbus declarative dri dts dvd dvdr ecc emboss encode evdev exif fam firefox fitz flac fortran freetds ftp gcj gdbm gif glamor gpg gpm gtk hdf5 hpn iconv ipv6 jpeg kde kipi latex lcms ldap libinput libnotify libressl llvm logrotate lzma mad melt minizip mmx mmxext mng modules mp3 mp4 mpeg mpeg3 mta multilib multimedia multitarget ncurses nls nptl nscd objc offensive ogg opengl openmp openmpi pam pango pax_kernel pcre pdf phonon php plasma png policykit postgres ppds qml qt3support qt4 qt5 rdoc readline scrypt sdl seccomp semantic-desktop server session spell sse sse2 ssl ssp startup-notification svg system-harfbuzz tcpd tiff timidity tools traceroute truetype udev udisks uml unicode upower usb v4l2 vorbis wav wayland webkit widgets wxwidgets xattr xcb xcomposite xinerama xml xmlreader xmp xscreensaver xslt xtpax xv xvfb xvid zenmap zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" CURL_SSL="libressl" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" L10N="doi en is ka kk mni ru zh-HK" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Comment 1 Toralf Förster gentoo-dev 2016-09-29 16:56:43 UTC
Created attachment 448420 [details]
emerge-history.txt
Comment 2 Toralf Förster gentoo-dev 2016-09-29 16:56:46 UTC
Created attachment 448422 [details]
environment
Comment 3 Toralf Förster gentoo-dev 2016-09-29 16:56:48 UTC
Created attachment 448424 [details]
sci-astronomy:casacore-2.1.0:20160929-004506.log
Comment 4 David Seifert gentoo-dev 2016-10-02 14:57:21 UTC
commit 02cd747eb9c3ec0c8ce5f3969c3d19061fe1bc51
Author: David Seifert <soap@gentoo.org>
Date:   Sun Sep 18 14:26:37 2016 +0200

    sci-astronomy/casacore: Allow for compiling with GCC 6
    
    Gentoo-bug: 594186
    
    Patch taken from upstream master branch
Comment 5 Toralf Förster gentoo-dev 2017-07-07 15:20:38 UTC
same issue with sci-astronomy/casacore-2.3.0 at the unstable amd64 chroot image 13.0-desktop_libressl-abi32+64_20170706-192148 at the tinderbox
Comment 6 Toralf Förster gentoo-dev 2017-07-07 15:20:42 UTC
Created attachment 481536 [details]
emerge-info.txt
Comment 7 Toralf Förster gentoo-dev 2017-07-07 15:20:45 UTC
Created attachment 481538 [details]
emerge-history.txt
Comment 8 Toralf Förster gentoo-dev 2017-07-07 15:20:48 UTC
Created attachment 481540 [details]
environment
Comment 9 Toralf Förster gentoo-dev 2017-07-07 15:20:52 UTC
Created attachment 481542 [details]
etc.portage.tbz2
Comment 10 Toralf Förster gentoo-dev 2017-07-07 15:20:55 UTC
Created attachment 481544 [details]
logs.tbz2
Comment 11 Toralf Förster gentoo-dev 2017-07-07 15:20:58 UTC
Created attachment 481546 [details]
sci-astronomy:casacore-2.3.0:20170707-053633.log
Comment 12 Toralf Förster gentoo-dev 2017-07-07 15:21:01 UTC
Created attachment 481548 [details]
temp.tbz2
Comment 13 Andreas Sturmlechner gentoo-dev 2019-06-28 01:35:02 UTC
Please re-open if this is being reproduced on profile 17.0++