Created attachment 446978 [details] build.log This does not happen with USE="-threads". checking for szlib... suppressed checking for thread safe support... configure: error: The thread-safe library is incompatible with the high-level library. --disable-hl can be used to prevent building the high-level library (recommended). Alternatively, --enable-unsupported will allow building the high-level library, though this configuration is not supported by The HDF Group. !!! Please attach the following file when seeking support: !!! /var/tmp/portage/sci-libs/hdf5-1.8.17/work/hdf5-1.8.17_build/config.log * ERROR: sci-libs/hdf5-1.8.17::gentoo failed (configure phase): * econf failed * * Call stack: * ebuild.sh, line 133: Called src_configure * environment, line 3323: Called autotools-utils_src_configure * environment, line 825: Called econf '--docdir=/usr/share/doc/hdf5-1.8.17' '--enable-shared' '--disable-static' '--enable-production' '--docdir=/usr/share/doc/hdf5-1.8.17' '--enable-deprecated-symbols' '--disable-sharedlib-rpath' '--disable-debug' '--disable-codestack' '--disable-cxx' '--disable-fortran' '--disable-fortran2003' '--disable-parallel' '--enable-threadsafe' '--without-szlib' '--with-pthread' '--with-zlib' * phase-helpers.sh, line 662: Called __helpers_die 'econf failed' * isolated-functions.sh, line 117: Called die * The specific snippet of code: * die "$@"
Created attachment 446980 [details] config.log configure:25550: checking for szlib configure:25552: result: suppressed configure:25845: checking for thread safe support configure:25860: error: The thread-safe library is incompatible with the high-level library. --disable-hl can be used to prevent building the high-level library (recommended). Alternatively, --enable-unsupported will allow building the high-level library, though this configuration is not supported by The HDF Group.
localhost ~ # emerge --info '=sci-libs/hdf5-1.8.17::gentoo' Portage 2.2.28 (python 2.7.10-final-0, default/linux/amd64/13.0, gcc-4.9.3, glibc-2.22-r4, 4.4.6-gentoo x86_64) ================================================================= System Settings ================================================================= System uname: Linux-4.4.6-gentoo-x86_64-Intel-R-_Core-TM-_i5-2520M_CPU_@_2.50GHz-with-gentoo-2.2 KiB Mem: 4043380 total, 3669308 free KiB Swap: 0 total, 0 free Timestamp of repository gentoo: Tue, 20 Sep 2016 00:45:01 +0000 sh bash 4.3_p42-r1 ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1 app-shells/bash: 4.3_p42-r1::gentoo dev-lang/perl: 5.22.2::gentoo dev-lang/python: 2.7.10-r1::gentoo, 3.4.3-r1::gentoo dev-util/pkgconfig: 0.28-r2::gentoo sys-apps/baselayout: 2.2::gentoo sys-apps/openrc: 0.21.3::gentoo sys-apps/sandbox: 2.10-r1::gentoo sys-devel/autoconf: 2.69::gentoo sys-devel/automake: 1.14.1::gentoo, 1.15::gentoo sys-devel/binutils: 2.25.1-r1::gentoo sys-devel/gcc: 4.9.3::gentoo sys-devel/gcc-config: 1.7.3::gentoo sys-devel/libtool: 2.4.6::gentoo sys-devel/make: 4.1-r1::gentoo sys-kernel/linux-headers: 4.3::gentoo (virtual/os-headers) sys-libs/glibc: 2.22-r4::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="* -@EULA" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/sandbox.d /etc/terminfo" CXXFLAGS="-O2 -pipe" DISTDIR="/usr/portage/distfiles" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://distfiles.gentoo.org" LDFLAGS="-Wl,-O1 -Wl,--as-needed" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="acl amd64 berkdb bindist bzip2 cli cracklib crypt cxx dri fortran gdbm iconv ipv6 mmx mmxext modules multilib ncurses nls nptl openmp pam pcre readline seccomp session sse sse2 ssl tcpd unicode xattr zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx sse sse2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, MAKEOPTS, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON localhost ~ # emerge -pqv '=sci-libs/hdf5-1.8.17::gentoo' [ebuild N ] sci-libs/hdf5-1.8.17 USE="threads zlib -cxx -debug -examples -fortran -fortran2003 -mpi -static-libs -szip" * IMPORTANT: 10 news items need reading for repository 'gentoo'. * Use eselect news read to view new items.
commit a9967848712addd75c9939714d067b3b7613d324 Author: Kacper Kowalik <xarthisius@gentoo.org> Date: Thu Sep 22 15:04:22 2016 -0500 sci-libs/hdf5: add use flag for enabling high level API Fixes bug #594560 reported by eroen <gentoo@eroen.eu> Package-Manager: portage-2.2.28
