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Bug 593644 - sci-chemistry/ball-1.4.2-r1 : /.../MPISupport.C:1142:83: error: declaration of ‘void BALL::MPISupport::combineDatapoints(const std::vector<valuetype>&) [with valuetype = BALL::TVector3<float>]’ has a different exception specifier
Summary: sci-chemistry/ball-1.4.2-r1 : /.../MPISupport.C:1142:83: error: declaration o...
Status: RESOLVED WONTFIX
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Deadline: 2019-04-30
Assignee: Gentoo Chemistry-Related Packages
URL:
Whiteboard:
Keywords: PMASKED
Depends on:
Blocks:
 
Reported: 2016-09-13 07:39 UTC by Toralf Förster
Modified: 2019-05-02 18:48 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-history.txt (emerge-history.txt,292.18 KB, text/plain)
2016-09-13 07:39 UTC, Toralf Förster
Details
environment (environment,152.25 KB, text/plain)
2016-09-13 07:39 UTC, Toralf Förster
Details
sci-chemistry:ball-1.4.2-r1:20160913-024621.log (sci-chemistry:ball-1.4.2-r1:20160913-024621.log,673.30 KB, text/plain)
2016-09-13 07:39 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2016-09-13 07:39:16 UTC
                    ^
/var/tmp/portage/sci-chemistry/ball-1.4.2-r1/work/BALL-1.4.2/source/SYSTEM/MPISupport.C: At global scope:
/var/tmp/portage/sci-chemistry/ball-1.4.2-r1/work/BALL-1.4.2/source/SYSTEM/MPISupport.C:1142:83: error: declaration of ‘void BALL::MPISupport::combineDatapoints(const std::vector<valuetype>&) [with valuetype = BALL::TVector3<float>]’ has a different exception specifier
 d MPISupport::combineDatapoints(const std::vector<TVector3<float> >& our_share)
                                                                               ^
In file included from /var/tmp/portage/sci-chemistry/ball-1.4.2-r1/work/BALL-1.4.2/source/SYSTEM/MPISupport.C:4:0:


$ cat emerge-info.txt
  -----------------------------------------------------------------

  This is an unstable amd64 chroot image (named amd64-hardened-unstable_20160907-195030) at a hardened host acting as a tinderbox.

  -----------------------------------------------------------------
  USE flags ...

  ... in make.conf:
USE="  pax_kernel xtpax -cdinstall -oci8 -bindist apache2 avformat cairo cgi consolekit designer -dvb eglfs emacs evdev ffmpeg fluidsynth -gles gnome-keyring gnutls -gtk3 hdf5 inifile isag llvm logrotate mad mpi mssql -multimedia multitarget mysql opengl pam pcre16 php pkcs11 png policykit postgres pwquality -qml qt3support sdl semantic-desktop server -smartcard smime spice sqlite3 system-cairo system-libvpx system-sqlite theora threads timidity tls traceroute usb usbredir v4l -video vim vorbis wayland -webgl -wxwidgets x264 xa -xcb xkb -xml xmlreader xz zenmap"

  ... in /etc/portage/package.use/*:
  mail-mta/ssmtp      ssl mta
  net-misc/wget       ssl
  app-crypt/pinentry  -qt4
  app-editors/emacs   -dbus -svg -ssl -gtk -gtk3
  app-text/xmlto      -latex
  dev-libs/boehm-gc   threads
  dev-libs/libpcre    pcre16
  dev-util/cmake      -qt4 -qt5
  dev-vcs/git         -perl
  gnome-base/librsvg  -tools
  media-libs/mesa     -vaapi
  <=net-misc/openssh-7.3_p1-r2    -hpn
  net-misc/iputils -caps -filecaps
  >=app-crypt/gcr-3.20.0 gtk
  >=dev-lang/python-2.7.12:2.7 xml
  >=dev-lang/python-3.4.5:3.4 xml
  >=dev-libs/glib-2.48.1-r1 dbus
  >=x11-libs/cairo-1.14.6 X
  >=x11-libs/gdk-pixbuf-2.34.0 X
  >=x11-libs/gtk+-3.20.9 X

  entries in /etc/portage/package.unmask/*:
  media-video/ffmpeg
  -----------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-4.9.3
 [2] x86_64-pc-linux-gnu-4.9.3-hardenednopie
 [3] x86_64-pc-linux-gnu-4.9.3-hardenednopiessp
 [4] x86_64-pc-linux-gnu-4.9.3-hardenednossp
 [5] x86_64-pc-linux-gnu-4.9.3-vanilla
 [6] x86_64-pc-linux-gnu-5.4.0 *
 [7] x86_64-pc-linux-gnu-5.4.0-hardenednopie
 [8] x86_64-pc-linux-gnu-5.4.0-hardenednopiessp
 [9] x86_64-pc-linux-gnu-5.4.0-hardenednossp
 [10] x86_64-pc-linux-gnu-5.4.0-vanilla

Available Python interpreters, in order of preference:
  [1]   python2.7
  [2]   python3.4
  [3]   python3.5 (fallback)
Available Ruby profiles:
  [1]   ruby20 (with Rubygems) *
  [2]   ruby21 (with Rubygems)
  -----------------------------------------------------------------

Portage 2.3.0 (python 2.7.12-final-0, hardened/linux/amd64, gcc-5.4.0, glibc-2.23-r2, 4.7.3-hardened x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-4.7.3-hardened-x86_64-Intel-R-_Core-TM-_i7-3930K_CPU_@_3.20GHz-with-gentoo-2.3
KiB Mem:    65285352 total,   1313312 free
KiB Swap:   67108860 total,  67097996 free
Timestamp of repository gentoo: Tue, 13 Sep 2016 01:06:50 +0000
sh bash 4.3_p46
ld GNU ld (Gentoo 2.26.1 p1.0) 2.26.1
app-shells/bash:          4.3_p46::gentoo
dev-lang/perl:            5.24.0-r1::gentoo
dev-lang/python:          2.7.12::gentoo, 3.4.5::gentoo, 3.5.2::gentoo
dev-util/cmake:           3.6.2::gentoo
dev-util/pkgconfig:       0.29.1::gentoo
sys-apps/baselayout:      2.3::gentoo
sys-apps/openrc:          0.21.7::gentoo
sys-apps/sandbox:         2.10-r2::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r2::gentoo
sys-devel/automake:       1.9.6-r4::gentoo, 1.11.6-r2::gentoo, 1.12.6-r1::gentoo, 1.13.4-r1::gentoo, 1.14.1-r1::gentoo, 1.15-r2::gentoo
sys-devel/binutils:       2.26.1::gentoo
sys-devel/gcc:            4.9.3::gentoo, 5.4.0::gentoo
sys-devel/gcc-config:     1.8-r1::gentoo
sys-devel/libtool:        2.4.6-r2::gentoo
sys-devel/make:           4.2.1::gentoo
sys-kernel/linux-headers: 4.7::gentoo (virtual/os-headers)
sys-libs/glibc:           2.23-r2::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: 1

local
    location: /usr/local/portage
    masters: gentoo
    priority: 2

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/qpsmtpd/plugins /var/rancid/.cloginrc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/var/tmp/distfiles"
EMERGE_DEFAULT_OPTS="--verbose --verbose-conflicts --color=n --nospinner --tree --quiet-build"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox parallel-fetch preserve-libs protect-owned sandbox sfperms strict test-fail-continue unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="acl amd64 apache2 avformat berkdb bzip2 cairo cgi cli consolekit cracklib crypt cxx designer dri eglfs emacs evdev ffmpeg fluidsynth gdbm gnome-keyring gnutls hardened hdf5 iconv inifile ipv6 isag justify llvm logrotate mad mmx mmxext modules mpi mssql multilib multitarget mysql ncurses nls nptl opengl openmp pam pax_kernel pcre pcre16 php pie pkcs11 png policykit postgres pwquality qt3support readline sdl seccomp semantic-desktop server session smime spice sqlite3 sse sse2 ssl ssp system-cairo system-libvpx system-sqlite tcpd theora threads timidity tls traceroute unicode urandom usb usbredir v4l vim vorbis wayland x264 xa xattr xkb xmlreader xtpax xz zenmap zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" L10N="bg" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Comment 1 Toralf Förster gentoo-dev 2016-09-13 07:39:19 UTC
Created attachment 445586 [details]
emerge-history.txt
Comment 2 Toralf Förster gentoo-dev 2016-09-13 07:39:21 UTC
Created attachment 445588 [details]
environment
Comment 3 Toralf Förster gentoo-dev 2016-09-13 07:39:24 UTC
Created attachment 445590 [details]
sci-chemistry:ball-1.4.2-r1:20160913-024621.log
Comment 4 Mikle Kolyada (RETIRED) archtester Gentoo Infrastructure gentoo-dev Security 2019-05-02 18:48:33 UTC
Gone.