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Bug 593060 - sci-libs/fftw-3.3.5-r2::gentoo failed compiling with mpi FLAG
Summary: sci-libs/fftw-3.3.5-r2::gentoo failed compiling with mpi FLAG
Status: RESOLVED NEEDINFO
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Linux bug wranglers
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2016-09-07 16:15 UTC by Randy Andy
Modified: 2016-09-27 16:56 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
fftw-3.3.5-r2 build.log (fftw-3.3.5-r2.build.log.tar.gz,2.56 KB, application/gzip)
2016-09-07 16:15 UTC, Randy Andy
Details
fftw-3.3.5-single-abi_x86_32.x86/config.log (fftw-3.3.5-single-abi_x86_32.x86_config.log,37.69 KB, text/x-log)
2016-09-27 16:56 UTC, Randy Andy
Details

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Description Randy Andy 2016-09-07 16:15:16 UTC
Created attachment 445142 [details]
fftw-3.3.5-r2 build.log

sci-libs/fftw-3.3.5-r2 doesn't compile with the mpi Flag. 
Presumably since virtual/mpi-2.0-r4 switches from sys-cluster/openmpi to sys-cluster/mpich2.

Without the mpi Flag it compiles fine. I've not tested this using sys-cluster/openmpi instead, cause dependency conflicts: 

[blocks B      ] sys-cluster/mpich2 ("sys-cluster/mpich2" is blocking sys-cluster/openmpi-1.10.3-r1)
[blocks B      ] sys-cluster/openmpi ("sys-cluster/openmpi" is blocking sys-cluster/mpich2-1.5)

Expectation: Should also compile with sys-cluster/mpich2 ;-)

Shortened log, more details see attachment.

checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for ocamlbuild... no
checking for mpicc... x86_64-pc-linux-gnu-gcc -m32
checking for MPI_Init... no
checking for MPI_Init in -lmpi... no
checking for MPI_Init in -lmpich... no
configure: error: could not find mpi library for --enable-mpi

!!! Please attach the following file when seeking support:
!!! /var/tmp/portage/sci-libs/fftw-3.3.5-r2/work/fftw-3.3.5-single-abi_x86_32.x86/config.log
 * ERROR: sci-libs/fftw-3.3.5-r2::gentoo failed (configure phase):
 *   econf failed
Comment 1 Randy Andy 2016-09-07 16:15:59 UTC
emerge --info
Portage 2.3.0 (python 2.7.12-final-0, default/linux/amd64/13.0/desktop, gcc-5.4.0, glibc-2.23-r2, 4.7.2-gentoo x86_64)
=================================================================
System uname: Linux-4.7.2-gentoo-x86_64-Intel-R-_Xeon-R-_CPU_X5650_@_2.67GHz-with-gentoo-2.3
KiB Swap:   16383996 total,  16333528 free
Timestamp of repository gentoo: Wed, 07 Sep 2016 00:45:01 +0000
sh bash 4.3_p46
ld GNU ld (Gentoo 2.26.1 p1.0) 2.26.1
distcc 3.2rc1 x86_64-pc-linux-gnu [disabled]
ccache version 3.2.7 [disabled]
app-shells/bash:          4.3_p46::gentoo
dev-java/java-config:     2.2.0-r3::gentoo
dev-lang/perl:            5.24.0-r1::gentoo
dev-lang/python:          2.7.12::gentoo, 3.4.5::gentoo
dev-util/ccache:          3.2.7::gentoo
dev-util/cmake:           3.6.1-r1::gentoo
dev-util/pkgconfig:       0.29.1::gentoo
sys-apps/baselayout:      2.3::gentoo
sys-apps/openrc:          0.21.7::gentoo
sys-apps/sandbox:         2.10-r2::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r2::gentoo
sys-devel/automake:       1.9.6-r4::gentoo, 1.11.6-r2::gentoo, 1.12.6-r1::gentoo, 1.13.4-r1::gentoo, 1.14.1-r1::gentoo, 1.15-r2::gentoo
sys-devel/binutils:       2.26.1::gentoo
sys-devel/gcc:            4.9.3::gentoo, 5.4.0::gentoo
sys-devel/gcc-config:     1.8-r1::gentoo
sys-devel/libtool:        2.4.6-r2::gentoo
sys-devel/make:           4.2.1::gentoo
sys-kernel/linux-headers: 4.7::gentoo (virtual/os-headers)
sys-libs/glibc:           2.23-r2::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: webrsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000

betagarden
    location: /var/lib/layman/betagarden
    sync-type: laymansync
    sync-uri: git://anongit.gentoo.org/proj/betagarden.git
    masters: gentoo
    priority: 50

sabayon
    location: /var/lib/layman/sabayon
    sync-type: laymansync
    sync-uri: git://github.com/Sabayon/for-gentoo.git
    masters: gentoo
    priority: 50

Installed sets: @system
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=westmere -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php7.0/ext-active/ /etc/php/cgi-php7.0/ext-active/ /etc/php/cli-php7.0/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=westmere -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
EMERGE_DEFAULT_OPTS="--quiet-build=n --keep-going --autounmask-write --autounmask-keep-masks  --jobs --load-average=20"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs clean-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync webrsync-gpg xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://mirror.netcologne.de/  http://gentoo.tiscali.nl/ http://ftp.uni-erlangen.de/pub/mirrors/gentoo http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror/"
LANG="de_DE.utf8"
LC_ALL=""
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j12 -l40"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="R X a52 aac aacplus aacs aalib accessibility acpi additions addressbook aften alsa amd64 amr amrenc animgif apm apng archive aspell audiofile audit autoipd avahi berkdb binary-drivers binfilter bluray bogofilter bookmarks boost branding btrfs bzip2 c++0x cairo calendar canvas caps ccache cdda cddb cdio cdparanoia cdr cdrdao cdrom celt cg cgi chipcard chm chroot cjk clamav cli client-libs clucene clutter compressed-lumas consolekit corefonts cover cracklib crypt css cue cups curl custom-cpuopts cvs cvsgraph cxx daemon dar64 dbus dc1394 declarative dhclient dia dirac disk-partition djbfft djvu dri dri3 drm dts dv dvd dvdnav dvdr dvi dynamic ebook editor egl emboss emovix encode enscript excel exif expoblending ext4 extensions extraengine extrafilters extras f2fs faac faad fam fame fat fdk ffmpeg fftw finger firefox firefox-bookmarks firefox3 flac flash flite flv fmod fontconfig foomaticdb fortran fortran2003 fpx frei0r fuse g3dvl gallium gbm gcj gd gdal gdbm geolocation gif gimp git glamor glew glib glut glx gme gmp gnokii gpac gphoto2 gpm gpssync gptfdisk gpu graph graphite graphviz gsf gsl gsm gstreamer gtk gtk3 gzip hddtemp hdri howl-compat html http httpd hwaccel iconv icq id3 id3tag ieee1394 image imagemagick imaging imap imlib infinality inkjar inotify introspection iostats ipc ipmi iptc iptv ipv6 irc ivtv jabber java java6 javacomm javascript jbig jce jingle joystick jpeg jpeg2k json juju kaapi kdenlive kdepim kdm kexiv2 kig-scripting kino kipi kmail kontact kvm ladspa lame lcdfilter lcms ldap ldap-bind ldap-sasl lensfun libass libcaca libnotify librrd libsamplerate libsoxr libv4l libv4l2 libvisual lightning live llvm lm_sensors logrotate logwatch loop-aes lua lua-cairo lxc lz4 lzma lzo mad magic magnetgenerator marble math matroska max-idx-128 mdnsresponder-compat melt metric midi mikmod mime mjpeg mmx mmxext mng mod modplug modules mono mouse mozdevelop mozilla mp3 mp3rtp mp4 mpd mpeg mpg123 mpi mpi-threads mplayer mpu401 mtp muine multilib multimedia multiprocess musepack music musicbrainz mysql mysqli nano-syntax nas ncurses network network-cron networkmanager nfs nfsdcld nfsidmap nfsv4 nfsv41 nls nntp normalize nptl nsplugin nss ntfs numa numpy nut nuv nvcontrol nvtt oauth obex ocean ocr ocrad odf odk ofa ogg ogg123 ogm openal openctl openexr opengl openmedia openmp openssl opensslcrypt opus oss pam pango panorama parted pch pcm pcre pda pdf pdfimport perforce perl pg-intdatetime php physfs pipe player plotutils pmount pmu png pnm podcast policykit pop postgis postproc ppds prelink prison private-headers profile profiler proj ps pstoedit pvr python python3 q32 q64 qalculate qemu qemu-block qos qt3support qt5 quesoglc quicktime quodlibet quvi radio rar raw readline redeyes rendering rle romio rsh rss rtc rtmp rtsp ruby scale0tilt scanner schedule schroedinger script scripting scripts scripttools sdl sdl-image sdl-sound sdlaudio search seccomp secure-delete semantic-desktop sensord server session sftp shaders shine shorten shout sieve sift skins slideshow smime smp sms sndfile snmp sound soundextract soundtouch soup source speex spell spice sql sqlite srt srtp sse sse2 sse2check sse3 sse4 sse4_1 sse4_2 ssh ssh1 ssl ssse3 staging startup-notification statistics stats stemmer stk stream suid svg svgz sync-plugin-portage sysfs syslog system-cairo system-icu system-jpeg szip t1lib taglib tcl tcmalloc tcpd teletext templates tesseract tga tgif themes theora threads threadsafe thumbnail thumbnails thunar tiff timidity tk toolame tools transcode tremor truetype tts tv_check tv_combiner tv_pick_cgi twolame type3 udev udisks umfpack uml unicode unzip upower urlpicpreview usb usbredir utempter utils uudeview uuid v4l v4l2 vala vamp vc vcd vcdinfo vcdx vde vdpau vdr vhost-net video videoslideshow views vim vim-syntax virt-network virtfs virtualbox virtuoso visibility vlm vorbis vpx vrml vxml wav wavpack weather-metar weather-xoap webcam webdav webgl webkit webm webp windeco winpopup wma wma-fixed wmf word-perfect wordperfect wxwidgets wxwindows x11vnc x264 x265 xanim xattr xcb xcf xface xforms xinerama xml xmlpatterns xmlreader xmlwriter xmp xorg xpm xps xscreensaver xsl xslt xterm xulrunner xv xvid xvmc xwax_decoders_aac xwax_decoders_cd xwax_decoders_flac xwax_decoders_misc xwax_decoders_mp3 xwax_decoders_ogg youtube yv12 zeroconf zip zlib zvbi" ABI_X86="64" ALSA_CARDS="hda-intel" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="*" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="evdev" KERNEL="linux" L10N="de de_DE" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="de" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" QEMU_SOFTMMU_TARGETS="aarch64 alpha arm armeb i386 mips m68k mips64 mips64el mipsel ppc ppc64 ppc64abi32 s390x sh4 sh4eb sparc sparc64 x86_64" QEMU_USER_TARGETS="aarch64 alpha arm armeb i386 mips m68k mips64 mips64el mipsel ppc ppc64 ppc64abi32 s390x sh4 sh4eb sparc sparc32plus sparc64 x86_64" RUBY_TARGETS="ruby20 ruby21" SANE_BACKENDS="plustek" USERLAND="GNU" VIDEO_CARDS="v4l2 nouveau" XFCE_PLUGINS="battery brightness clock multiload-nandhp power trash" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Comment 2 Alex Xu (Hello71) 2016-09-16 22:42:03 UTC
!!! Please attach the following file when seeking support:
!!! /var/tmp/portage/sci-libs/fftw-3.3.5-r2/work/fftw-3.3.5-single-abi_x86_32.x86/config.log
Comment 3 Randy Andy 2016-09-27 16:56:19 UTC
Created attachment 448130 [details]
fftw-3.3.5-single-abi_x86_32.x86/config.log

Sorry for the big delay, I had overlooked this.
Now I attached the requested log file.

Thanks for looking into it.