make[1]: Leaving directory `/scratch/mmokrejs/gentoo/tmp/var/tmp/portage-2.2.28/prefix-portage-2.2.28' * prefix-portage successfully bootstrapped * stage1 successfully finished !!! Section 'x-portage' in repos.conf has location attribute set to nonexistent directory: '/scratch/usr/portage' !!! Section 'gentoo' in repos.conf has name different from repository name 'gentoo_prefix' set inside repository * Bootstrapping Gentoo prefixed portage installation using * host: x86_64-pc-linux-gnu * prefix: /scratch/mmokrejs/gentoo * ready to bootstrap stage2_log USE=-berkdb -fortran -gdbm -git -libcxx -nls -pcre -ssl -python bootstrap clang internal-glib -cxx PKG=sys-libs/ncurses Performing Global Updates (Could take a couple of minutes if you have a lot of binary packages.) .='update pass' *='binary update' #='/var/db update' @='/var/db move' s='/var/db SLOT move' %='binary move' S='binary SLOT move' p='update /etc/portage/package.*' /scratch/mmokrejs/gentoo/usr/portage/profiles/updates/1Q-2011........................................................................... /scratch/mmokrejs/gentoo/usr/portage/profiles/updates/2Q-2011............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ /scratch/mmokrejs/gentoo/usr/portage/profiles/updates/3Q-2011.......................... /scratch/mmokrejs/gentoo/usr/portage/profiles/updates/4Q-2011............................................................................................................. /scratch/mmokrejs/gentoo/usr/portage/profiles/updates/1Q-2012....................... /scratch/mmokrejs/gentoo/usr/portage/profiles/updates/2Q-2012........................ /scratch/mmokrejs/gentoo/usr/portage/profiles/updates/3Q-2012..................................................... /scratch/mmokrejs/gentoo/usr/portage/profiles/updates/4Q-2012............................................................. /scratch/mmokrejs/gentoo/usr/portage/profiles/updates/1Q-2013.................................................................................................. /scratch/mmokrejs/gentoo/usr/portage/profiles/updates/2Q-2013............... /scratch/mmokrejs/gentoo/usr/portage/profiles/updates/3Q-2013............ /scratch/mmokrejs/gentoo/usr/portage/profiles/updates/4Q-2013...... /scratch/mmokrejs/gentoo/usr/portage/profiles/updates/1Q-2014....... /scratch/mmokrejs/gentoo/usr/portage/profiles/updates/2Q-2014.. /scratch/mmokrejs/gentoo/usr/portage/profiles/updates/3Q-2014................ /scratch/mmokrejs/gentoo/usr/portage/profiles/updates/4Q-2014............. /scratch/mmokrejs/gentoo/usr/portage/profiles/updates/1Q-2015................................................................... /scratch/mmokrejs/gentoo/usr/portage/profiles/updates/2Q-2015................................................................................................................................................................................................................................................. /scratch/mmokrejs/gentoo/usr/portage/profiles/updates/3Q-2015........................... /scratch/mmokrejs/gentoo/usr/portage/profiles/updates/4Q-2015............................................. /scratch/mmokrejs/gentoo/usr/portage/profiles/updates/1Q-2016............................................... /scratch/mmokrejs/gentoo/usr/portage/profiles/updates/2Q-2016................................ !!! /scratch/mmokrejs/gentoo/tmp/etc/portage/make.profile is not a symlink and will probably prevent most merges. !!! It should point into a profile within /scratch/mmokrejs/gentoo/usr/portage/profiles/ !!! (You can safely ignore this message when syncing. It's harmless.) !!! Problem with sandbox binary. Disabling... There is a symlink, but the target files are missing: $ ls -latr /scratch/mmokrejs/gentoo/tmp/etc/portage/make.profile lrwxrwxrwx 1 mmokrejs mmokrejs 64 Jun 17 12:19 /scratch/mmokrejs/gentoo/tmp/etc/portage/make.profile -> /scratch/mmokrejs/gentoo/usr/portage/profiles/prefix/linux/amd64 $ ls -latr /scratch/mmokrejs/gentoo/usr/portage/profiles/prefix/linux/amd64 total 8 drwxr-xr-x 7 mmokrejs mmokrejs 4096 Apr 19 09:56 .. drwxr-xr-x 2 mmokrejs mmokrejs 4096 Jun 17 13:33 . $ Seems I will need to restart ./bootstrap-prefix.sh in a clean tree, maybe I messed with several attempts to re-run ./bootstrap-prefix.sh and manual delete of created files so far.