Created attachment 437766 [details] Failed scilab build log # emerge -1 scilab Calculating dependencies... done! >>> Verifying ebuild manifests >>> Running pre-merge checks for sci-mathematics/scilab-5.5.2-r1 * Checking for at least 512 MiB RAM ... [ ok ] >>> Emerging (1 of 1) sci-mathematics/scilab-5.5.2-r1::science * scilab-5.5.2-src.tar.gz SHA256 SHA512 WHIRLPOOL size ;-) ... [ ok ] * Using following Fortran compiler: * F77: x86_64-pc-linux-gnu-gfortran * FC: x86_64-pc-linux-gnu-gfortran * x86_64-pc-linux-gnu-gfortran has OPENMP support * Using: icedtea-7 >>> Unpacking source... >>> Unpacking scilab-5.5.2-src.tar.gz to /tmp/portage/sci-mathematics/scilab-5.5.2-r1/work >>> Source unpacked in /tmp/portage/sci-mathematics/scilab-5.5.2-r1/work >>> Preparing source in /tmp/portage/sci-mathematics/scilab-5.5.2-r1/work/scilab-5.5.2 ... * Applying scilab-5.5.2-followlinks.patch ... [ ok ] * Applying scilab-5.5.2-gluegen.patch ... [ ok ] * Applying scilab-5.5.2-fix-random-runtime-failure.patch ... [ ok ] * Applying scilab-5.5.2-accessviolation.patch ... [ ok ] * Applying scilab-5.5.2-missinglib.patch ... [ ok ] * Applying scilab-5.5.2-batik-1.8.patch ... [ ok ] * Applying scilab-5.5.2-fop-2.0.patch ... [ ok ] * Applying scilab-5.5.2-xmlgraphics-common-2.0.patch ... [ ok ] * Applying scilab-5.5.2-freehep.patch ... [ ok ] * Applying scilab-5.5.2-java-heap.patch ... [ ok ] * ERROR: sci-mathematics/scilab-5.5.2-r1::science failed (prepare phase): * Failed to find xml-apis-ext.jar in xml-commons-external-1.4 * * Call stack: * ebuild.sh, line 133: Called src_prepare * environment, line 5459: Called java-pkg_jar-from '--build-only' 'xml-commons-external-1.4' 'xml-apis-ext.jar' * environment, line 4116: Called die * The specific snippet of code: * die "Failed to find ${target_jar:-jar} in ${target_pkg}"; * * If you need support, post the output of `emerge --info '=sci-mathematics/scilab-5.5.2-r1::science'`, * the complete build log and the output of `emerge -pqv '=sci-mathematics/scilab-5.5.2-r1::science'`. !!! When you file a bug report, please include the following information: GENTOO_VM=icedtea-7 CLASSPATH="" JAVA_HOME="/usr/lib64/icedtea7" JAVACFLAGS="-source 1.5 -target 1.5" COMPILER="" and of course, the output of emerge --info =scilab-5.5.2 * The complete build log is located at '/tmp/portage/sci-mathematics/scilab-5.5.2-r1/temp/build.log'. * The ebuild environment file is located at '/tmp/portage/sci-mathematics/scilab-5.5.2-r1/temp/environment'. * Working directory: '/tmp/portage/sci-mathematics/scilab-5.5.2-r1/work/scilab-5.5.2/jar' * S: '/tmp/portage/sci-mathematics/scilab-5.5.2-r1/work/scilab-5.5.2'
$ qlist -Iv xml-commons-external dev-java/xml-commons-external-1.3.04 dev-java/xml-commons-external-1.4.01-r1
$ equery depends dev-java/xml-commons-external-1.3.04 * These packages depend on dev-java/xml-commons-external-1.3.04: dev-java/batik-1.8-r3 (dev-java/xml-commons-external:1.3) dev-java/fop-2.0-r2 (dev-java/xml-commons-external:1.3) dev-java/jeuclid-core-3.1.9-r1 (dev-java/xml-commons-external:1.3) dev-java/xerces-2.11.0-r1 (dev-java/xml-commons-external:1.4) dev-java/xom-1.2.10 (dev-java/xml-commons-external:1.3) sci-mathematics/scilab-5.5.2-r1 (doc ? dev-java/xml-commons-external:1.4) $ equery depends dev-java/xml-commons-external-1.4.01-r1 * These packages depend on dev-java/xml-commons-external-1.4.01-r1: dev-java/batik-1.8-r3 (dev-java/xml-commons-external:1.3) dev-java/fop-2.0-r2 (dev-java/xml-commons-external:1.3) dev-java/jeuclid-core-3.1.9-r1 (dev-java/xml-commons-external:1.3) dev-java/xerces-2.11.0-r1 (dev-java/xml-commons-external:1.4) dev-java/xom-1.2.10 (dev-java/xml-commons-external:1.3) sci-mathematics/scilab-5.5.2-r1 (doc ? dev-java/xml-commons-external:1.4)
# emerge --info Portage 2.3.0_rc1 (python 3.4.4-final-0, default/linux/amd64/13.0/desktop/plasma, gcc-5.4.0, glibc-2.23-r2, 4.6.1-gentoo x86_64) ================================================================= System uname: Linux-4.6.1-gentoo-x86_64-Intel-R-_Core-TM-_i5-3230M_CPU_@_2.60GHz-with-gentoo-2.2 KiB Mem: 16316788 total, 8685640 free KiB Swap: 2096124 total, 2095940 free Timestamp of repository gentoo: Fri, 17 Jun 2016 07:00:01 +0000 sh bash 4.3_p42-r2 ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1 distcc 3.2rc1 x86_64-pc-linux-gnu [enabled] app-shells/bash: 4.3_p42-r2::gentoo dev-java/java-config: 2.2.0-r3::gentoo dev-lang/perl: 5.24.0-r1::gentoo dev-lang/python: 2.7.11-r2::gentoo, 3.4.4::gentoo, 3.5.1-r3::gentoo dev-util/cmake: 3.5.2-r1::gentoo dev-util/pkgconfig: 0.29.1::gentoo sys-apps/baselayout: 2.2::gentoo sys-apps/openrc: 0.21::gentoo sys-apps/sandbox: 2.10-r2::gentoo sys-devel/autoconf: 2.13::gentoo, 2.69-r2::gentoo sys-devel/automake: 1.13.4-r1::gentoo, 1.14.1-r1::gentoo, 1.15-r2::gentoo sys-devel/binutils: 2.25.1-r1::gentoo sys-devel/gcc: 5.4.0::gentoo sys-devel/gcc-config: 1.8-r1::gentoo sys-devel/libtool: 2.4.6-r2::gentoo sys-devel/make: 4.2.1::gentoo sys-kernel/linux-headers: 4.6::gentoo (virtual/os-headers) sys-libs/glibc: 2.23-r2::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 testing location: /usr/local/portage masters: gentoo priority: 0 java location: /var/lib/layman/java sync-type: laymansync sync-uri: git://anongit.gentoo.org/proj/java.git masters: gentoo priority: 50 mrueg location: /var/lib/layman/mrueg sync-type: laymansync sync-uri: https://anongit.gentoo.org/git/dev/mrueg.git masters: gentoo priority: 50 proaudio location: /var/lib/layman/proaudio sync-type: laymansync sync-uri: svn://svn.tuxfamily.org/svnroot/proaudio/proaudio/trunk/overlays/proaudio masters: gentoo priority: 50 science location: /var/lib/layman/science sync-type: laymansync sync-uri: git://anongit.gentoo.org/proj/sci.git masters: gentoo priority: 50 sinustrom location: /var/lib/layman/sinustrom sync-type: laymansync sync-uri: https://github.com/zpuskas/sinustrom-gentoo-overlay.git masters: gentoo priority: 50 vaca location: /var/lib/layman/vaca sync-type: laymansync sync-uri: git://github.com/hashashin/gentoo-vaca-overlay.git masters: gentoo priority: 50 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* -@EULA" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=ivybridge -maes -mavx -mcx16 -mf16c -mfsgsbase -mfxsr -mmmx -mpclmul -mpopcnt -mrdrnd -msahf -msse -msse3 -msse3 -msse4 -msse4.1 -msse4.2 -mssse3 -mtune=ivybridge -mxsave -mxsaveopt --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=3072 -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=ivybridge -maes -mavx -mcx16 -mf16c -mfsgsbase -mfxsr -mmmx -mpclmul -mpopcnt -mrdrnd -msahf -msse -msse3 -msse3 -msse4 -msse4.1 -msse4.2 -mssse3 -mtune=ivybridge -mxsave -mxsaveopt --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=3072 -O2 -pipe" DISTDIR="/usr/portage/distfiles" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distcc distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://ftp-stud.hs-esslingen.de/pub/Mirrors/gentoo/ http://gentoo.inf.elte.hu/ http://gd.tuwien.ac.at/opsys/linux/gentoo/ " LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j20 -l4" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/tmp" USE="X a52 aac acl acpi aes alsa amd64 avx bash-completion berkdb bluetooth branding bzip2 cairo cdda cdr cli consolekit cracklib crypt cups cxx dbus declarative dri dts dvd dvdr emboss encode exif fam firefox flac fortran gdbm gif glamor gphoto2 gpm gtk hardened iconv ipv6 jpeg jpeg2k kde kipi lcms ldap libnotify lm_sensors lzma mad mmx mmxext mng modules mp3 mp4 mpeg multilib ncurses networkmanager nls nptl ogg opengl openmp pam pango pcre pdf phonon plasma png policykit popcnt posix ppds qml qt3support qt4 qt5 readline sdl seccomp session smp spell sse sse2 sse3 sse4_1 sse4_2 ssl ssse3 startup-notification svg tcpd threads tiff truetype udev udisks unicode upower usb uxa vaapi vim-syntax vorbis widgets wifi wxwidgets x264 xattr xcb xcomposite xinerama xml xpm xscreensaver xv xvid xvmc zlib" ABI_X86="64" ALSA_CARDS="hda-intel usb-audio" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev wacom synaptics joystick" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LIRC_DEVICES="alsa_usb" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" QEMU_SOFTMMU_TARGETS="x86_64 arm" QEMU_USER_TARGETS="x86_64 arm" RUBY_TARGETS="ruby20 ruby21 ruby22 ruby23" SANE_BACKENDS="plustek" USERLAND="GNU" VIDEO_CARDS="intel i965" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Confirmed. I don't know how java packages are handled, but it seems that the issue happens because dev-java/xml-commons-external-1.4.01-r1 install different jar files: * Contents of dev-java/xml-commons-external-1.3.04: /usr /usr/share /usr/share/doc /usr/share/doc/xml-commons-external-1.3.04 /usr/share/doc/xml-commons-external-1.3.04/NOTICE.bz2 /usr/share/doc/xml-commons-external-1.3.04/README.dom.txt.bz2 /usr/share/doc/xml-commons-external-1.3.04/README.sax.txt.bz2 /usr/share/xml-commons-external-1.3 /usr/share/xml-commons-external-1.3/lib /usr/share/xml-commons-external-1.3/lib/xml-apis-ext.jar /usr/share/xml-commons-external-1.3/lib/xml-apis.jar /usr/share/xml-commons-external-1.3/package.env * Contents of dev-java/xml-commons-external-1.4.01: /usr /usr/share /usr/share/doc /usr/share/doc/xml-commons-external-1.4.01 /usr/share/doc/xml-commons-external-1.4.01/NOTICE.bz2 /usr/share/doc/xml-commons-external-1.4.01/README.dom.txt.bz2 /usr/share/doc/xml-commons-external-1.4.01/README.sax.txt.bz2 /usr/share/xml-commons-external-1.4 /usr/share/xml-commons-external-1.4/lib /usr/share/xml-commons-external-1.4/lib/xml-apis-ext.jar /usr/share/xml-commons-external-1.4/lib/xml-apis.jar /usr/share/xml-commons-external-1.4/package.env * Contents of dev-java/xml-commons-external-1.4.01-r1: /usr /usr/share /usr/share/xml-commons-external-1.4 /usr/share/xml-commons-external-1.4/lib /usr/share/xml-commons-external-1.4/lib/xml-commons-external.jar /usr/share/xml-commons-external-1.4/package.env Reverting to xml-commons-external-1.4.01 makes the build of scilab succeed.
