Revdep-rebuild complains about broken R-packages: root@lynx:/root(3)# revdep-rebuild -p * This is the new python coded version ... !!! Broken orphaned files: No installed package was found for the following: * /usr/lib64/R/library/JavaGD/libs/JavaGD.so * /usr/lib64/R/library/rJava/libs/rJava.so * /usr/lib64/R/library/rJava/jri/libjri.so ldd shows missing libjvm.so for these files, e.g.: root@lynx:/root(4)# ldd /usr/lib64/R/library/JavaGD/libs/JavaGD.so linux-vdso.so.1 (0x00007fffc8de1000) libjvm.so => not found libR.so => /usr/lib64/R/lib/libR.so (0x00007ff869c77000) libc.so.6 => /lib64/libc.so.6 (0x00007ff8698de000) libf77blas.so.3 => /usr/lib64/libf77blas.so.3 (0x00007ff868e3c000) ... But libjvm.so seems to be installed by gcc and icedtea: root@lynx:/root(6)# find /usr/lib/ -name libjvm.so\* /usr/lib/gcj-5.4.0-16/libjvm.so /usr/lib/icedtea7/jre/lib/amd64/server/libjvm.so /usr/lib/gcj-4.9.3-15/libjvm.so /usr/lib/gcj-5.3.0-16/libjvm.so root@lynx:/root(7)# qlist -Iv icedtea dev-java/icedtea-7.2.6.6 dev-java/icedtea-bin-3.0.1 dev-java/icedtea-sound-1.0.1 dev-java/icedtea-web-1.6.1-r1 root@lynx:/root(9)# gcc-config -l [1] x86_64-pc-linux-gnu-4.9.3 [2] x86_64-pc-linux-gnu-5.3.0 [3] x86_64-pc-linux-gnu-5.4.0 * root@lynx:/root(11)# java-config -L The following VMs are available for generation-2: *) IcedTea JDK 7.2.6.6 [icedtea-7] 2) IcedTea JDK 3.0.1 [icedtea-bin-8] Any hint is apprecieated.
Have you tried to rebuild dev-lang/R?
Hi Juergen, did what Thomas wrote help?
> !!! Broken orphaned files That means the files are not owned by any package installed by portage. No amount of revdep-rebuilding will fix them.
