from src/cxx_supportlib/vendor-modified/boost/libs/thread/src/pthread/thread.cpp:32: src/cxx_supportlib/vendor-modified/boost/math/special_functions/fpclassify.hpp: In function ‘bool boost::math_detail::is_nan_helper(__float128, const true_type&)’: src/cxx_supportlib/vendor-modified/boost/math/special_functions/fpclassify.hpp:137:75: error: ‘::isnan’ has not been declared bool is_nan_helper(__float128 f, const boost::true_type&) { return ::isnan(sta ^ src/cxx_supportlib/vendor-modified/boost/math/special_functions/fpclassify.hpp:137:75: note: suggested alternatives: $ cat emerge-info.txt ----------------------------------------------------------------- This is an unstable amd64 chroot image (named amd64-hardened-unstable_20160409-165255) at a hardened host acting as a tinderbox. ----------------------------------------------------------------- make.conf: USE="mmx sse sse2 pax_kernel -cdinstall -oci8 -bindist -alsa cdda -clang csc curl -custom-cflags -dec_av2 dot extraengine ffmpeg -fontconfig fpm git -gnomecanvas gpg gudev hdf5 -icu imap ipv6 -llvm mod multitarget nscd pwquality python qemu qml qt5 scripts sddm server -sqlite3 ssl system-jpeg system-sqlite tls -uml -vaapi wxwidgets -xa xmp -xz -zip" ----------------------------------------------------------------- Portage 2.2.28 (python 3.4.3-final-0, hardened/linux/amd64, gcc-5.3.0, glibc-2.23-r1, 4.4.6-hardened-r2 x86_64) ================================================================= System uname: Linux-4.4.6-hardened-r2-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2 KiB Mem: 16157888 total, 1291276 free KiB Swap: 16777212 total, 16694768 free Timestamp of repository gentoo: Fri, 15 Apr 2016 06:03:12 +0000 sh bash 4.3_p42-r2 ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1 distcc 3.2rc1 x86_64-pc-linux-gnu [disabled] ccache version 3.2.4 [disabled] app-shells/bash: 4.3_p42-r2::gentoo dev-lang/perl: 5.22.1::gentoo dev-lang/python: 2.7.11-r2::gentoo, 3.4.3-r7::gentoo, 3.5.1-r2::gentoo dev-util/ccache: 3.2.4::gentoo dev-util/cmake: 3.5.1::gentoo dev-util/pkgconfig: 0.29.1::gentoo sys-apps/baselayout: 2.2::gentoo sys-apps/openrc: 0.20.5::gentoo sys-apps/sandbox: 2.10-r2::gentoo sys-devel/autoconf: 2.13::gentoo, 2.69-r2::gentoo sys-devel/automake: 1.10.3-r2::gentoo, 1.11.6-r2::gentoo, 1.13.4-r1::gentoo, 1.14.1-r1::gentoo, 1.15-r2::gentoo sys-devel/binutils: 2.25.1-r1::gentoo sys-devel/gcc: 4.9.3::gentoo, 5.3.0::gentoo sys-devel/gcc-config: 1.8-r1::gentoo sys-devel/libtool: 2.4.6-r2::gentoo sys-devel/make: 4.1-r1::gentoo sys-kernel/linux-headers: 4.5::gentoo (virtual/os-headers) sys-libs/glibc: 2.23-r1::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.de.gentoo.org/gentoo-portage/ priority: 1 local location: /usr/local/portage masters: gentoo priority: 2 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /etc/stunnel/stunnel.conf /usr/share/config /usr/share/easy-rsa /usr/share/gnupg/qualified.txt /usr/share/qpsmtpd/plugins /var/lib/i2pd/certificates" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.5/ext-active/ /etc/php/apache2-php7.0/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cgi-php7.0/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/php/cli-php7.0/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/var/tmp/distfiles" EMERGE_DEFAULT_OPTS="--deep --verbose-conflicts --color=n --nospinner --tree --quiet-build --accept-properties=-interactive --accept-restrict=-fetch" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j1" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="acl amd64 berkdb bzip2 cdda cli cracklib crypt csc curl cxx dot dri extraengine ffmpeg fpm gdbm git gpg gudev hardened hdf5 iconv imap ipv6 justify mmx mmxext mod modules multilib multitarget ncurses nls nptl nscd openmp pam pax_kernel pcre pie pwquality python qemu qml qt5 readline scripts sddm seccomp server session sse sse2 ssl ssp system-jpeg system-sqlite tcpd tls unicode urandom wxwidgets xattr xmp xtpax zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en en_GB" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="intel i965" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Created attachment 430616 [details] emerge-history.txt
Created attachment 430618 [details] environment
Created attachment 430620 [details] www-apache:passenger-5.0.27:20160415-102025.log
I can't seem to reproduce this so I'm wondering if you still can, or if this was perhaps related to the patched glibc version that was introduced for a short period of time?
(In reply to Hans de Graaff from comment #4) that's why the blocker is set ;)
(In reply to Hans de Graaff from comment #4) that's why the blocker is set - but I added #575232 too
but FWIW www-apache/passenger-5.0.28 emerges fine
i don't think this is related to sysmacros. the failure is not major/minor/makedev but math related.
*** Bug 586354 has been marked as a duplicate of this bug. ***
*** Bug 586958 has been marked as a duplicate of this bug. ***
Reopening this since Toralf filed a couple of duplicates so I guess the problem is still present for him.
I'm having the same problem; is there any workaround/patch available?
(In reply to Arnim Eijkhoudt from comment #12) > I'm having the same problem; is there any workaround/patch available? I haven't been able to reproduce this so this bug is low-priority for me (compared to all other ruby-related issues). It might be useful to file this upstream instead and get it fixed there.
Bump... This still happens with Passenger 5.0.30, Boost 1.61, GCC 5.4.0 and GLIBC 2.23-r2. I honestly don't know how to otherwise answer your question on reproduction; it happens consistently for me at the same point in the build, with the same reference (error) to Boost. Could you help me help you better in reproducing this?
This is caused by the update to glibc 2.23; ::isnan must now be std::isnan, apparently. This is also now a problem in stable amd64, btw, the current stable www-apache/passenger no longer builds. I'll attach a patch to passenger 5.1.1 that fixes it; it should probably also work with 5.0.30. It's not extensively tested, but I have confirmed 5.1.1 builds with it and runs a couple of ruby apps.
Created attachment 459822 [details, diff] patch to fix building with glibc 2.23
This broke upgrades on Infra machines, so I verified & applied the fix. [master e27754fd8b] www-apache/passenger: bug#580078 isnan compile fix. Date: Fri Feb 3 22:43:23 2017 -0800 5 files changed, 19 insertions(+), 1 deletion(-) create mode 100644 www-apache/passenger/files/passenger-5.1.1-isnan.patch
