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Bug 565096 - dev-lang/julia-0.3.0 won't compile against dev-libs/gmp-6.1.0
Summary: dev-lang/julia-0.3.0 won't compile against dev-libs/gmp-6.1.0
Status: RESOLVED OBSOLETE
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: AMD64 Linux
: Normal normal
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2015-11-08 00:33 UTC by Zhu Sha Zang
Modified: 2016-01-16 12:02 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
build log (build.log,13.08 KB, text/x-log)
2015-11-08 00:34 UTC, Zhu Sha Zang
Details
environment (environment,88.17 KB, text/plain)
2015-11-08 00:34 UTC, Zhu Sha Zang
Details
package info (info.txt,11.40 KB, text/plain)
2015-11-08 00:35 UTC, Zhu Sha Zang
Details
package pqv (pqv.txt,52 bytes, text/plain)
2015-11-08 00:35 UTC, Zhu Sha Zang
Details

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Description Zhu Sha Zang 2015-11-08 00:33:05 UTC
After upgrade to dev-libs/gmp-6.1.0 was necessery to recompile some sources include julia. But every time that was tried the compilation fail!

Reproducible: Always

Steps to Reproduce:
1. emerge -uDN world

Actual Results:  
make -C libuv
make[2]: Entering directory '/var/tmp/portage/dev-lang/julia-0.3.0/work/libuv'
 /bin/sh ./config.status
config.status: creating libuv.pc
config.status: creating Makefile
config.status: executing depfiles commands
config.status: executing libtool commands
  GEN      include/uv-dtrace.h
('/usr/bin/dtrace', 'invalid option', '-xnolibs')
Usage /usr/bin/dtrace [--help] [-h | -G] [-C [-I<Path>]] -s File.d [-o <File>]
Makefile:3952: recipe for target 'include/uv-dtrace.h' failed
make[2]: *** [include/uv-dtrace.h] Error 1
make[2]: Leaving directory '/var/tmp/portage/dev-lang/julia-0.3.0/work/libuv'
Makefile:468: recipe for target 'libuv/.libs/libuv.a' failed
make[1]: *** [libuv/.libs/libuv.a] Error 2
make[1]: Leaving directory '/var/tmp/portage/dev-lang/julia-0.3.0/work/julia-0.3.0/deps'
Makefile:87: recipe for target 'julia-release' failed
make: *** [julia-release] Error 2
 * ERROR: dev-lang/julia-0.3.0::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=dev-lang/julia-0.3.0::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=dev-lang/julia-0.3.0::gentoo'`.
 * The complete build log is located at '/var/tmp/portage/dev-lang/julia-0.3.0/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/dev-lang/julia-0.3.0/temp/environment'.
 * Working directory: '/var/tmp/portage/dev-lang/julia-0.3.0/work/julia-0.3.0'
 * S: '/var/tmp/portage/dev-lang/julia-0.3.0/work/julia-0.3.0'

>>> Failed to emerge dev-lang/julia-0.3.0, Log file:

>>>  '/var/tmp/portage/dev-lang/julia-0.3.0/temp/build.log'
 * 
 * The following package has failed to build, install, or execute postinst:
 * 
 *  (dev-lang/julia-0.3.0:0/0::gentoo, ebuild scheduled for merge), Log file:
 *   '/var/tmp/portage/dev-lang/julia-0.3.0/temp/build.log'
 * 


Expected Results:  
Correct julia installation.

[root@asgard ~/julia]$ emerge --info                                                                                                                                                        21:32
Portage 2.2.24 (python 2.7.10-final-0, default/linux/amd64/13.0, gcc-4.9.3, glibc-2.22-r1, 4.2.5-gentoo-asgard x86_64)
=================================================================
System uname: Linux-4.2.5-gentoo-asgard-x86_64-Intel-R-_Core-TM-_i5_CPU_M_460_@_2.53GHz-with-gentoo-2.2
KiB Mem:     3845688 total,    959656 free
KiB Swap:    3903788 total,   3597872 free
Timestamp of repository gentoo: Sat, 07 Nov 2015 11:30:01 +0000
sh bash 4.3_p42
ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1
app-shells/bash:          4.3_p42::gentoo
dev-java/java-config:     2.2.0::gentoo
dev-lang/perl:            5.22.0::gentoo
dev-lang/python:          2.7.10-r2::gentoo, 3.3.5-r2::gentoo, 3.4.3-r2::gentoo, 3.5.0-r1::gentoo
dev-util/cmake:           3.3.2-r1::gentoo
dev-util/pkgconfig:       0.29::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/openrc:          0.18.3::gentoo
sys-apps/sandbox:         2.9::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r1::gentoo
sys-devel/automake:       1.11.6-r1::gentoo, 1.13.4::gentoo, 1.14.1::gentoo, 1.15::gentoo
sys-devel/binutils:       2.25.1-r1::gentoo
sys-devel/gcc:            4.9.3::gentoo
sys-devel/gcc-config:     1.8::gentoo
sys-devel/libtool:        2.4.6-r1::gentoo
sys-devel/make:           4.1-r1::gentoo
sys-kernel/linux-headers: 4.2::gentoo (virtual/os-headers)
sys-libs/glibc:           2.22-r1::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=core2 -mtune=generic -O2 -pipe -Wstack-protector"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /etc/stunnel/stunnel.conf /usr/share/config /usr/share/gnupg/qualified.txt /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=core2 -mtune=generic -O2 -pipe -Wstack-protector"
DISTDIR="/usr/portage/distfiles"
EMERGE_DEFAULT_OPTS="--quiet-build=n --keep-going=y --with-bdeps=y"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
USE="256-color R X Xaw3d a52 aalib acoustid acpi addbookmarks admin adobe-cff aesicm aff aio airdrop-ng airgraph-ng alac alarm alisp all_sfx alsa amd64 amr animation-rtl ao aosd apbs aplaymidi apm apng archive ares armadillo asf asm aspell asyncns athena audit auto-hinter autoipd autotrace avahi background bash-completion bashlogger battery bazaar beatport berkdb bitmap bittorrent bluetooth bluez bogofilter bookmarks botan branding bs2b bsf btrfs bzip2 cacert cairo calendar canna canna-2ch caps caps-ng charset chart chm cjk cli client cmake colorpicker compat connectivity console consolekit contacts context contrast contrib corefonts cpuload cracklib crash-reporter creds cron crypt cryptsetup cscope css csv ctype curl curlwrappers cvs cxx dap databasedesigner dbi dbus debugger declarative derby designer designer-plugin desktopglobe detex device-mapper dhcp dia discogs display-manager djvu dmraid dmx dns docbook dom dot dpi dri drm dts dv dvb dvi2tty dvipdfm eap-sim eap-tls ebook egl elbeem embedded emf enca enchant encode epspdf epub epydoc equalizer escreen evdev excel exif expat extra extraengine extras f2fs faac faad fakevim fam fasttrack fat fbcon feedback fftw firefox-bookmarks flac flash fontconfig fontforge fonts foomaticdb fortran fortran2003 fpx freeimage ftp fuse gallery gallium game-engine games gbm gc gcj gcl gcrypt gd gdbm geoip geos gflags ggi gif git gkrellm gl glade glamor gles gles1 gles2 glib glpk gme gmp gmxmopac7 gnumeric gnuplot gnutella go google gost gpg gphoto2 gpl gpm graphics graphite graphviz gsl gsm gtk gtk3 gtkspell gtkstyle gts gudev gui gzip hddtemp hdri hesiod hfs highlight history hpcups hpijs html htmlreport http httpd httppower humanities icons iconv icq id3tag idn image imaging imap imlib infinality inkjar inotify intel_led introspection iostats iplsrc iptc ipv6 ipython irc isag jadetex java javafx javascript jbig jce jemalloc jfs jit joystick jpeg judy justify kasumi kate kbindicator kdrive kipi ladspa lame lapack lastfm lastgenre latex lcms led lensfun libass libav libcaca libcanberra libcerf libevent libffi libguess libkms libmpv libnotify libopts libtiger libvisual live lm_sensors localstorage location lock logger logrotate logwatch lqr lua lua-cairo lua-imlib luajit luajittex luatex lv2 lximage lyx lzma lzo mac mad madde map math mathml matplotlib matroska mbox md5 md5sum mdadm mdnsresponder-compat melt mercurial messaging metalink metapost metis mfd-rewrites minizip mms mmx mmxext mng mobi modules mount mouse mozilla mp3 mp4 mpeg mpg123 multilib multimedia multislot multitarget multiterm multiuser musepack music musicbrainz nano-syntax nas nat nat-pmp native-headset ncat ncurses ndiff neXt netbeans netlink netpbm nettle network networking networkmonitor nls nmap-update nntp notebook notify nping nptl nsplugin nss ntfs ntl numpy nut nvcontrol nvidia ocaml ocr octave offensive ofono-headset ofx ogdi ogg ogg123 ogm ogre okular omega oniguruma oom openal opencv openexr openft opengl openmedia openmp openssl opensslcrypt optimisememory optimization orc organizer oscar osmesa otr p2p pam pango pcap pci pcntl pcre16 pda pdf pep8 perforce perl pgf physfs player playtools plazes plotutils plugin-autowep plugin-btscan plugin-checksum plugin-doat plugin-dot15d4 plugin-fishlim plugin-ptw plugin-spectools plugin-sysinfo plugin-syslog plugins png policykit pop portmon positioning posix postgres postproc postscript powermanagement powersave ppds ppp prediction prison privacy profiling ps psf pstricks publishers publishsubscribe pulseaudio pvr pyflakes pygments pylint pyqt4 pythia8 python python3 pyx qalculate qdbm qhull qimageblitz qml qrcode qrd qrupdate qscintilla qt-dbus qt3support qt4 qt5 qthelp quark quicklaunch quicktime quotes quvi qwt radio raptor rar rcs readline realtime recode redeyes regis rendering replaygain resolver reverse-proxy rfc3779 rope rpc rplay rss rtc rtf rtmp rtsp rubberband sasl sbc scanfolder scanner schroedinger science scipy scope script scripts scsi sctp sdl sdl-image sdl-sound sdlaudio sdlgfx seccomp secure secure-delete security semantic-desktop sensord sensors serviceframework session shm shorten sidebar skype slang slit smi smime smp sms smtp sna sndfile snmp soap sockets socks5 softstore sound sourceview sox spam-report spamassassin sparse spell sql sqlite sse sse2 ssh ssh-askpass ssl staging startup-notification stats stroke strong-optimization subversion svg sysstat systeminfo systemtap t1lib taglib tbb tcl tcpd tcpdump tcpreplay tdb tellico tex tex4ht texi2html texmacs themes theora thin-splines threads thunderbird tidy tiff timezone tint2conf tinyxml tk toolbar tools tordns truetype tta twitter twolame udev udis86 udisks uim unicode unique upnp-av upower urlpicpreview usb utils uvm uxa v4l v8 vaapi vamp velvetbird versit vf-dlopen video vim vim-pager vim-syntax visio visual vix vlm vmware-tools vnc volpack vorbis vpx vtk wallpapers wav waveout wavpack wayland wayland-compositor wddx weather weather-metar weather-xoap web webaccess webchannel webdav-neon webp webrtc-aec websockets whiteboarding widgets wifi wma-fixed wmf worldclock wpg wps wxwidgets wyfv x11extras x264 x265 xattr xcomposite xdg xetex xface xfs xft xgetdefault xim xindy xine xinerama xkb xls xml xmldoclet xmlpatterns xmlrpc xmp xmpp xnest xorg xosd xpm xrandr xrender xscreensaver xv xvfb xvid yahoo zip zlib zsh-completion zvbi" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="lbmethod_bytraffic cgi actions alias auth_basic auth_digest authn_anon authn_core authn_dbd authn_dbm authn_default authn_file authz_core authz_dbm authz _default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias slotmem_shm unixd socache_shmcb" APACHE2_MPMS="worker" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ricoh samsung spca50x" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" CURL_SSL="nss" DVB_CARDS="dibusb-usb1 dibusb-usb2 usb-dib0700" ELIBC="glibc" ENLIGHTENMENT_MODULES="access backlight battery clock comp conf-applications conf-dialogs conf-display conf-edgebindings conf-interaction conf-intl conf-keybindings conf-menus conf-paths conf-performance conf-randr conf-shelves conf-theme conf-window-manipulation conf-window-remembers connman cpufreq dropshadow everything fileman fileman-opinfo gadman ibar ibox illume2 mixer msgbus notification pager quickaccess shot start syscon systray tasks temperature tiling winlist wizard xkbswitch" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="pc" INPUT_DEVICES="keyboard mouse evdev synaptics joystick" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="de pt_BR en" NETBEANS_MODULES="apisupport cnd dlight extide enterprise ergonomics groovy java mobility profiler websvccommon javacard javafx" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby22" SANE_BACKENDS="hp" USERLAND="GNU" VIDEO_CARDS="vesa vga v4l fbdev intel i915 modesetting nvidia i965" XTABLES_ADDONS="account chaos condition delude dhcpmac fuzzy geoip iface ipmark ipp2p ipv4options length2 logmark lscan pknock psd quota2 rawnat steal sysrq tarpit tee checksum dnetmap echo gradm ipset4"
USE_PYTHON="2.7 3.2 3.3"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 1 Zhu Sha Zang 2015-11-08 00:34:31 UTC
Created attachment 416258 [details]
build log
Comment 2 Zhu Sha Zang 2015-11-08 00:34:58 UTC
Created attachment 416260 [details]
environment
Comment 3 Zhu Sha Zang 2015-11-08 00:35:23 UTC
Created attachment 416262 [details]
package info
Comment 4 Zhu Sha Zang 2015-11-08 00:35:45 UTC
Created attachment 416264 [details]
package pqv
Comment 5 Matthias Maier gentoo-dev 2016-01-16 12:02:20 UTC
This compilation issue has likely nothing to do with gmp-6.1.0. julia-0.3.0 has multiple unrelated compilation issues.

I cannot reproduce with julia-0.4.3 that is now in tree:

commit 9f85644c4b07c3b4340594082da6e3d317e9bea9
Author: Matthias Maier <tamiko@gentoo.org>
Date:   Sat Jan 16 12:25:10 2016 +0100

    dev-lang/julia: version bump to 0.4.3 (bug 564338)
    
    Package-Manager: portage-2.2.26