At the end of the output from 'emerge @preserved-rebuild', which reemerges thunderbird-38.3.0, I see: ... >>> Installing (1 of 1) mail-client/thunderbird-38.3.0::gentoo * * If you experience problems with plugins please issue the * following command : rm ${HOME}/.thunderbird/*/extensions.sqlite , * then restart thunderbird * * If calendar fails to show up in extensions please open config editor * and set extensions.lastAppVersion to 38.0.0 to force a reload. If this * fails to show the calendar extension after restarting with above change * please file a bug report. >>> Auto-cleaning packages... >>> No outdated packages were found on your system. * GNU info directory index is up-to-date. !!! existing preserved libs: >>> package: www-client/seamonkey-2.38 * - /usr/lib64/seamonkey/libmozalloc.so * used by /usr/lib64/thunderbird/components/libdbusservice.so (mail-client/thunderbird-38.3.0) * used by /usr/lib64/thunderbird/components/libmozgnome.so (mail-client/thunderbird-38.3.0) * used by /usr/lib64/thunderbird/distribution/extensions/{e2fda1a4-762b-4020-b5ad-a41df1933103}/components/libcalbasecomps.so (mail-client/thunderbird-38.3.0) * used by 2 other files Use emerge @preserved-rebuild to rebuild packages using these libraries root@lynx2:/usr/local/portage/media-libs(66) So the next 'emerge @preserved-rebuild' will emerge thunderbird again.
(In reply to Juergen Rose from comment #0) > At the end of the output from 'emerge @preserved-rebuild', which reemerges > thunderbird-38.3.0, I see: > > ... > >>> Installing (1 of 1) mail-client/thunderbird-38.3.0::gentoo > * > * If you experience problems with plugins please issue the > * following command : rm ${HOME}/.thunderbird/*/extensions.sqlite , > * then restart thunderbird > * > * If calendar fails to show up in extensions please open config editor > * and set extensions.lastAppVersion to 38.0.0 to force a reload. If this > * fails to show the calendar extension after restarting with above change > * please file a bug report. > >>> Auto-cleaning packages... > > >>> No outdated packages were found on your system. > > * GNU info directory index is up-to-date. > > !!! existing preserved libs: > >>> package: www-client/seamonkey-2.38 > * - /usr/lib64/seamonkey/libmozalloc.so > * used by /usr/lib64/thunderbird/components/libdbusservice.so > (mail-client/thunderbird-38.3.0) > * used by /usr/lib64/thunderbird/components/libmozgnome.so > (mail-client/thunderbird-38.3.0) > * used by > /usr/lib64/thunderbird/distribution/extensions/{e2fda1a4-762b-4020-b5ad- > a41df1933103}/components/libcalbasecomps.so (mail-client/thunderbird-38.3.0) > * used by 2 other files > Use emerge @preserved-rebuild to rebuild packages using these libraries > root@lynx2:/usr/local/portage/media-libs(66) > > > So the next 'emerge @preserved-rebuild' will emerge thunderbird again. So you have seamonkey installed and thunderbird linked to it? Have you done anything out of the ordinary to cause thunderbird to link to seamonkey's libmozalloc.so as I have never seen such behavior.
(In reply to Jory A. Pratt from comment #1) > (In reply to Juergen Rose from comment #0) > > At the end of the output from 'emerge @preserved-rebuild', which reemerges > > thunderbird-38.3.0, I see: ... > > > > So the next 'emerge @preserved-rebuild' will emerge thunderbird again. > > So you have seamonkey installed and thunderbird linked to it? Have you done > anything out of the ordinary to cause thunderbird to link to seamonkey's > libmozalloc.so as I have never seen such behavior. I see this issue only at one system. I am not aware, that I did something special with thunderbird at this system. root@lynx2:/root(4)# emerge --info thunderbird Portage 2.2.23 (python 2.7.10-final-0, default/linux/amd64/13.0/desktop/gnome/systemd, gcc-4.9.3, glibc-2.22-r1, 4.3.0-gentoo x86_64) ================================================================= System Settings ================================================================= System uname: Linux-4.3.0-gentoo-x86_64-Intel-R-_Core-TM-2_Duo_CPU_T7500_@_2.20GHz-with-gentoo-2.2 KiB Mem: 3971648 total, 1205428 free KiB Swap: 12582908 total, 12582908 free Timestamp of repository gentoo: Fri, 06 Nov 2015 03:30:01 +0000 sh bash 4.3_p42 ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1 app-shells/bash: 4.3_p42::gentoo dev-java/java-config: 2.2.0::gentoo dev-lang/perl: 5.22.0::gentoo dev-lang/python: 2.7.10::gentoo, 3.4.3::gentoo, 3.5.0-r1::gentoo dev-util/cmake: 3.3.2-r1::gentoo dev-util/pkgconfig: 0.29::gentoo sys-apps/baselayout: 2.2::gentoo sys-apps/openrc: 0.18.3::gentoo sys-apps/sandbox: 2.9::gentoo sys-devel/autoconf: 2.13::gentoo, 2.69-r1::gentoo sys-devel/automake: 1.9.6-r4::gentoo, 1.11.6-r1::gentoo, 1.12.6::gentoo, 1.13.4::gentoo, 1.14.1::gentoo, 1.15::gentoo sys-devel/binutils: 2.25.1-r1::gentoo sys-devel/gcc: 4.9.3::gentoo sys-devel/gcc-config: 1.8::gentoo sys-devel/libtool: 2.4.6-r1::gentoo sys-devel/make: 4.1-r1::gentoo sys-kernel/linux-headers: 4.3::gentoo (virtual/os-headers) sys-libs/glibc: 2.22-r1::gentoo Repositories: gentoo location: /usr/portage_lynx2 sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 x11 location: /var/lib/layman/x11 masters: gentoo priority: 0 sage-on-gentoo location: /var/lib/layman/sage-on-gentoo masters: gentoo science priority: 1 sunrise location: /var/lib/layman/sunrise masters: gentoo priority: 2 science location: /var/lib/layman/science masters: gentoo priority: 3 tlp location: /var/lib/layman/tlp masters: gentoo priority: 4 x-portage location: /usr/local/portage masters: gentoo priority: 5 g-cpan location: /var/lib/cpan masters: gentoo priority: 6 g-octave location: /var/lib/g-octave masters: gentoo priority: 7 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* -@EULA PUEL Intel-SDP dlj-1.1 skype-eula skype-4.0.0.7-copyright googleearth AdobeFlash-11.x cadsoft Oracle-BCLA-JavaSE MakeMKV-EULA NVIDIA-CUDA Nero-AAC-EULA GIMPS" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.6/ext-active/ /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/udev/rules.d" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/usr/portage/distfiles" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-march=native -O2 -pipe" GENTOO_MIRRORS="http://distfiles.gentoo.org" LANG="en_US.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" USE="64bit R X Xaw3d a52 aac acl acpi admin afs alsa amd64 amr ao apache2 apng applet archive armadillo arpack asf aspell assistant atlas audacious audiofile automap automount bash-completion berkdb blas blast bluetooth bluray boost branding bzip2 cairo cdda cddb cdf cdio cdparanoia cdr cgi chm cilk cli cmake collada colord cracklib crypt css cups curl cxx daap db dbi dbm dbus declarative designer devhelp device-mapper dga dia dirac djvu doc dot dri ds2490 ds9097 ds9097u dts dv dvb dvd dvdr dvi dynamicplugin eds egl elf emacs emboss emf encode epiphany evo examples excel exif expat extensions extra extras faac faad fam ffmpeg fftw firefox fits flac fltk fontconfig foomaticdb fortran fortran95 fpm fpx ftp fuse gcj gd gdal gdbm gdu gedit geoip geolocation geos gfortran gif gimp git glade glamor glib glpk gml gmp gnome gnome-keyring gnome-online-accounts gnuplot gnutls gold gphoto2 gpm grammar graphics graphtft graphviz grass gsl gsm gstreamer gtk gtk3 gudev guile hdaps hddtemp hdf hdf5 hdri html http httpd hvm hwdb iconv icq icu id3tag ide imagemagick imap inotify introspection ipod ipv6 irda ithreads jabber jadetex java jbig jit john jpeg jpeg2k kate kde kdepim kdrive kerberos keymap kpathsea kvm ladspa lame lapack latex lcms ldap lensfun libffi libgda libkms libnotify libsamplerate libsecret lirc live lua lzma lzo mad mail maildir mapnik math matroska media-library mercurial mikmod mkl mmx mmxext mng mod modules mono motif mozilla mp3 mp4 mpeg mpi mpi-threads mplayer mtp multilib multimedia musepack musicbrainz mysql mysqli nautilus ncurses netcdf netpbm network networking nfs nls nntp nptl nsplugin ntfs ntp numpy obex objc ocaml ocr octave odbc ofa ogdi ogg opencv openexr opengl openmp openvg pam pango pcre pda pdf pdl2 perl plasma plotutils plugins png podcast policykit portaudio posix postgres postscript ppds preview-latex proj projectm pstricks pulseaudio python q32 qemu qhull qt3support qt4 qt5 quicktime raw readline reiserfs reports rle romio rpc rrdcgi rrdtool rtlsdr sage samba sasl schroedinger science sdk sdl seccomp secure-delete semantic-desktop server session shout sip slang slp smart smbclient smp sms sndfile snmp soap sockets sound soup sox speex spell sql sqlite sse sse2 ssl startup-notification stlport subtitles subversion sudo suexec svg svm swig systemd szip t1lib tbb tcl tcpd tex tex4ht texmacs theora thesaurus thinkpad threads thunderbird tidy tiff tk tools tracker truetype udev udisks unicode upower usb utempter v4l v4l2 vaapi vala valgrind vdpau video virt-network virtualbox visio vorbis vpx vtk wav webdav webdav-serf webkit wifi wmf wxwidgets x264 xa xattr xcb xetex xext xft xine xml xmlreader xmlrpc xpm xv xvid xvmc yaml youtube zlib zvbi" ABI_X86="64" ALSA_CARDS="intel8x0" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_core authn_dbm authn_default authn_file authz_core authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info lbmethod_byrequests log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif slotmem_shm so socache_shmcb speling status unique_id unixd userdir usertrack vhost_alias" APACHE2_MPMS="worker" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="canon fuji ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2 sse3 ssse3" CURL_SSL="nss" DVB_CARDS="usb-wt220u" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev synaptics void" KERNEL="linux" LCD_DEVICES="cfontz hd44780 mtxorb ncurses X lcd2usb lcdlinux png usblcd SureElec" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="de en fr ru" NETBEANS_MODULES="apisupport cnd dlight enterprise ergonomics groovy gsf harness ide identity j2ee java mobility nb php profiler websvccommon xml" OFFICE_IMPLEMENTATION="libreoffice" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" QEMU_SOFTMMU_TARGETS="arm i386 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="intel displaylink" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON ================================================================= Package Settings ================================================================= mail-client/thunderbird-38.3.0::gentoo was built with the following: USE="crypt dbus gstreamer jemalloc3 jit ldap minimal pulseaudio startup-notification -bindist -custom-cflags -custom-optimization -debug -gstreamer-0 -hardened -lightning -mozdom (-selinux) -system-cairo -system-icu -system-jpeg -system-libvpx -system-sqlite" ABI_X86="64" LINGUAS="de fr ru -ar -ast -be -bg -bn_BD -br -ca -cs -cy -da -el -en_GB -es_AR -es_ES -et -eu -fi -fy_NL -ga_IE -gd -gl -he -hr -hsb -hu -hy_AM -id -is -it -ja -ko -lt -nb_NO -nl -nn_NO -pa_IN -pl -pt_BR -pt_PT -rm -ro -si -sk -sl -sq -sr -sv_SE -ta_LK -tr -uk -vi -zh_CN -zh_TW" CFLAGS="-march=native -pipe -Wno-return-type -w" CXXFLAGS="-march=native -pipe -Wno-return-type -w" At the other systems, where seamonkey and thunderbird is installed as well, thunderbird-38.3.0 was installed once at Oct 1st, and there is no need for reemerging.
we not use rpath to ensure the libs are properly found in 38.4.0 so this issue is no longer. Thanks for reporting, if you are stilling having troubles after upgrade please let us know.
