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Bug 564248 - dev-java/jdbc-postgresql-9.4_p1204 broke hive-1.2.1
Summary: dev-java/jdbc-postgresql-9.4_p1204 broke hive-1.2.1
Status: RESOLVED UPSTREAM
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: [OLD] Java (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Java team
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2015-10-27 08:49 UTC by Drunkard Zhang
Modified: 2015-11-02 09:19 UTC (History)
0 users

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Package list:
Runtime testing required: ---

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Description Drunkard Zhang 2015-10-27 08:49:57 UTC 
After updated to =dev-java/jdbc-postgresql-9.4_p1204, metastore server of hive-1.2.1 can't start again, after downgraded to <=dev-java/jdbc-postgresql-9.4_p1203, it worked again, nothing changed on hive configuration. I'm not good at java, just give you full output, hope it helps:

./bin/hive --service metastore
Starting Hive Metastore Server
javax.jdo.JDOFatalInternalException: The java type java.lang.Integer (jdbc-type="", sql-type="") cant be mapped for this datastore. No mapping is available.
	at org.datanucleus.api.jdo.NucleusJDOHelper.getJDOExceptionForNucleusException(NucleusJDOHelper.java:591)
	at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.freezeConfiguration(JDOPersistenceManagerFactory.java:788)
	at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.createPersistenceManagerFactory(JDOPersistenceManagerFactory.java:333)
	at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.getPersistenceManagerFactory(JDOPersistenceManagerFactory.java:202)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:497)
	at javax.jdo.JDOHelper$16.run(JDOHelper.java:1965)
	at java.security.AccessController.doPrivileged(Native Method)
	at javax.jdo.JDOHelper.invoke(JDOHelper.java:1960)
	at javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1166)
	at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808)
	at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701)
	at org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:365)
	at org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:394)
	at org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:291)
	at org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:258)
	at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:76)
	at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:136)
	at org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:57)
	at org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:66)
	at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:593)
	at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:571)
	at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:624)
	at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:461)
	at org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:66)
	at org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:72)
	at org.apache.hadoop.hive.metastore.HiveMetaStore.newRetryingHMSHandler(HiveMetaStore.java:5756)
	at org.apache.hadoop.hive.metastore.HiveMetaStore.newRetryingHMSHandler(HiveMetaStore.java:5751)
	at org.apache.hadoop.hive.metastore.HiveMetaStore.startMetaStore(HiveMetaStore.java:5984)
	at org.apache.hadoop.hive.metastore.HiveMetaStore.main(HiveMetaStore.java:5909)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:497)
	at org.apache.hadoop.util.RunJar.run(RunJar.java:221)
	at org.apache.hadoop.util.RunJar.main(RunJar.java:136)
NestedThrowablesStackTrace:
The java type java.lang.Integer (jdbc-type="", sql-type="") cant be mapped for this datastore. No mapping is available.
org.datanucleus.exceptions.NucleusException: The java type java.lang.Integer (jdbc-type="", sql-type="") cant be mapped for this datastore. No mapping is available.
	at org.datanucleus.store.rdbms.mapping.RDBMSMappingManager.getDatastoreMappingClass(RDBMSMappingManager.java:1215)
	at org.datanucleus.store.rdbms.mapping.RDBMSMappingManager.createDatastoreMapping(RDBMSMappingManager.java:1378)
	at org.datanucleus.store.rdbms.table.ProbeTable.initialize(ProbeTable.java:66)
	at org.datanucleus.store.rdbms.RDBMSStoreManager.initialiseSchema(RDBMSStoreManager.java:1430)
	at org.datanucleus.store.rdbms.RDBMSStoreManager.<init>(RDBMSStoreManager.java:391)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
	at java.lang.reflect.Constructor.newInstance(Constructor.java:422)
	at org.datanucleus.plugin.NonManagedPluginRegistry.createExecutableExtension(NonManagedPluginRegistry.java:631)
	at org.datanucleus.plugin.PluginManager.createExecutableExtension(PluginManager.java:301)
	at org.datanucleus.NucleusContext.createStoreManagerForProperties(NucleusContext.java:1187)
	at org.datanucleus.NucleusContext.initialise(NucleusContext.java:356)
	at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.freezeConfiguration(JDOPersistenceManagerFactory.java:775)
	at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.createPersistenceManagerFactory(JDOPersistenceManagerFactory.java:333)
	at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.getPersistenceManagerFactory(JDOPersistenceManagerFactory.java:202)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:497)
	at javax.jdo.JDOHelper$16.run(JDOHelper.java:1965)
	at java.security.AccessController.doPrivileged(Native Method)
	at javax.jdo.JDOHelper.invoke(JDOHelper.java:1960)
	at javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1166)
	at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808)
	at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701)
	at org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:365)
	at org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:394)
	at org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:291)
	at org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:258)
	at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:76)
	at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:136)
	at org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:57)
	at org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:66)
	at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:593)
	at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:571)
	at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:624)
	at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:461)
	at org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:66)
	at org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:72)
	at org.apache.hadoop.hive.metastore.HiveMetaStore.newRetryingHMSHandler(HiveMetaStore.java:5756)
	at org.apache.hadoop.hive.metastore.HiveMetaStore.newRetryingHMSHandler(HiveMetaStore.java:5751)
	at org.apache.hadoop.hive.metastore.HiveMetaStore.startMetaStore(HiveMetaStore.java:5984)
	at org.apache.hadoop.hive.metastore.HiveMetaStore.main(HiveMetaStore.java:5909)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:497)
	at org.apache.hadoop.util.RunJar.run(RunJar.java:221)
	at org.apache.hadoop.util.RunJar.main(RunJar.java:136)
Exception in thread "main" javax.jdo.JDOFatalInternalException: The java type java.lang.Integer (jdbc-type="", sql-type="") cant be mapped for this datastore. No mapping is available.
	at org.datanucleus.api.jdo.NucleusJDOHelper.getJDOExceptionForNucleusException(NucleusJDOHelper.java:591)
	at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.freezeConfiguration(JDOPersistenceManagerFactory.java:788)
	at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.createPersistenceManagerFactory(JDOPersistenceManagerFactory.java:333)
	at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.getPersistenceManagerFactory(JDOPersistenceManagerFactory.java:202)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:497)
	at javax.jdo.JDOHelper$16.run(JDOHelper.java:1965)
	at java.security.AccessController.doPrivileged(Native Method)
	at javax.jdo.JDOHelper.invoke(JDOHelper.java:1960)
	at javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1166)
	at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808)
	at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701)
	at org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:365)
	at org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:394)
	at org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:291)
	at org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:258)
	at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:76)
	at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:136)
	at org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:57)
	at org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:66)
	at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:593)
	at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:571)
	at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:624)
	at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:461)
	at org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:66)
	at org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:72)
	at org.apache.hadoop.hive.metastore.HiveMetaStore.newRetryingHMSHandler(HiveMetaStore.java:5756)
	at org.apache.hadoop.hive.metastore.HiveMetaStore.newRetryingHMSHandler(HiveMetaStore.java:5751)
	at org.apache.hadoop.hive.metastore.HiveMetaStore.startMetaStore(HiveMetaStore.java:5984)
	at org.apache.hadoop.hive.metastore.HiveMetaStore.main(HiveMetaStore.java:5909)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:497)
	at org.apache.hadoop.util.RunJar.run(RunJar.java:221)
	at org.apache.hadoop.util.RunJar.main(RunJar.java:136)
NestedThrowablesStackTrace:
The java type java.lang.Integer (jdbc-type="", sql-type="") cant be mapped for this datastore. No mapping is available.
org.datanucleus.exceptions.NucleusException: The java type java.lang.Integer (jdbc-type="", sql-type="") cant be mapped for this datastore. No mapping is available.
	at org.datanucleus.store.rdbms.mapping.RDBMSMappingManager.getDatastoreMappingClass(RDBMSMappingManager.java:1215)
	at org.datanucleus.store.rdbms.mapping.RDBMSMappingManager.createDatastoreMapping(RDBMSMappingManager.java:1378)
	at org.datanucleus.store.rdbms.table.ProbeTable.initialize(ProbeTable.java:66)
	at org.datanucleus.store.rdbms.RDBMSStoreManager.initialiseSchema(RDBMSStoreManager.java:1430)
	at org.datanucleus.store.rdbms.RDBMSStoreManager.<init>(RDBMSStoreManager.java:391)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
	at java.lang.reflect.Constructor.newInstance(Constructor.java:422)
	at org.datanucleus.plugin.NonManagedPluginRegistry.createExecutableExtension(NonManagedPluginRegistry.java:631)
	at org.datanucleus.plugin.PluginManager.createExecutableExtension(PluginManager.java:301)
	at org.datanucleus.NucleusContext.createStoreManagerForProperties(NucleusContext.java:1187)
	at org.datanucleus.NucleusContext.initialise(NucleusContext.java:356)
	at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.freezeConfiguration(JDOPersistenceManagerFactory.java:775)
	at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.createPersistenceManagerFactory(JDOPersistenceManagerFactory.java:333)
	at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.getPersistenceManagerFactory(JDOPersistenceManagerFactory.java:202)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:497)
	at javax.jdo.JDOHelper$16.run(JDOHelper.java:1965)
	at java.security.AccessController.doPrivileged(Native Method)
	at javax.jdo.JDOHelper.invoke(JDOHelper.java:1960)
	at javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1166)
	at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808)
	at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701)
	at org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:365)
	at org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:394)
	at org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:291)
	at org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:258)
	at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:76)
	at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:136)
	at org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:57)
	at org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:66)
	at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:593)
	at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:571)
	at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:624)
	at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:461)
	at org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:66)
	at org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:72)
	at org.apache.hadoop.hive.metastore.HiveMetaStore.newRetryingHMSHandler(HiveMetaStore.java:5756)
	at org.apache.hadoop.hive.metastore.HiveMetaStore.newRetryingHMSHandler(HiveMetaStore.java:5751)
	at org.apache.hadoop.hive.metastore.HiveMetaStore.startMetaStore(HiveMetaStore.java:5984)
	at org.apache.hadoop.hive.metastore.HiveMetaStore.main(HiveMetaStore.java:5909)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:497)
	at org.apache.hadoop.util.RunJar.run(RunJar.java:221)
	at org.apache.hadoop.util.RunJar.main(RunJar.java:136)
Comment 1 Patrice Clement (RETIRED) gentoo-dev 2015-11-02 09:19:34 UTC 
Hi and thank you for the bug report.

Can you file a bug upstream? Like you, we can only notice the bug but cannot do much about it.

Upstream URL is: https://issues.apache.org/jira/browse/HIVE/?selectedTab=com.atlassian.jira.jira-projects-plugin:summary-panel

We could file a bug on your behalf but Hive devs will ask for specific details about your configuration and such so I guess it's best to do it yourself and fill them in. Please let us know / reopen if you need help.