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Bug 561838 - dev-libs/liblinear-210-r1: linker errors
Summary: dev-libs/liblinear-210-r1: linker errors
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: [OLD] Library (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Jeroen Roovers (RETIRED)
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2015-09-29 16:40 UTC by Jakub Panachida
Modified: 2015-09-30 04:53 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


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Description Jakub Panachida 2015-09-29 16:40:04 UTC
make -j4 CC=x86_64-pc-linux-gnu-gcc CXX=x86_64-pc-linux-gnu-g++ 'CFLAGS=-march=native -O2 -fno-stack-protector -pipe -fomit-frame-pointer -fPIC' 'CXXFLAGS=-march=native -O2 -fno-stack-protector -pipe -fPIC' 'AR=x86_64-pc-linux-gnu-ar rcv' RANLIB=x86_64-pc-linux-gnu-ranlib LIBS=-L/usr/lib64/blas/reference -lblas lib all 
x86_64-pc-linux-gnu-g++ -march=native -O2 -fno-stack-protector -pipe -fomit-frame-pointer -fPIC -c -o linear.o linear.cpp
x86_64-pc-linux-gnu-g++ -march=native -O2 -fno-stack-protector -pipe -fomit-frame-pointer -fPIC -c -o tron.o tron.cpp
if [ "Linux" = "Darwin" ]; then \
        SHARED_LIB_FLAG="-dynamiclib -Wl,-install_name,liblinear.so.3"; \
else \
        SHARED_LIB_FLAG="-shared -Wl,-soname,liblinear.so.3"; \
fi; \
x86_64-pc-linux-gnu-g++ ${SHARED_LIB_FLAG} -Wl,-O1 -Wl,--as-needed linear.o tron.o  -o liblinear.so.3
x86_64-pc-linux-gnu-g++ -march=native -O2 -fno-stack-protector -pipe -fomit-frame-pointer -fPIC -Wl,-O1 -Wl,--as-needed -o predict predict.c tron.o linear.o -L/usr/lib64/blas/reference
tron.o: In function `TRON::trcg(double, double*, double*, double*)':
tron.cpp:(.text+0x226): undefined reference to `dnrm2_'
tron.cpp:(.text+0x245): undefined reference to `ddot_'
tron.cpp:(.text+0x2ad): undefined reference to `ddot_'
tron.cpp:(.text+0x2d7): undefined reference to `daxpy_'
tron.cpp:(.text+0x2e7): undefined reference to `dnrm2_'
tron.cpp:(.text+0x320): undefined reference to `daxpy_'
tron.cpp:(.text+0x334): undefined reference to `ddot_'
tron.cpp:(.text+0x357): undefined reference to `dscal_'
tron.cpp:(.text+0x370): undefined reference to `daxpy_'
tron.cpp:(.text+0x37e): undefined reference to `dnrm2_'
tron.cpp:(.text+0x40b): undefined reference to `daxpy_'
tron.cpp:(.text+0x41f): undefined reference to `ddot_'
tron.cpp:(.text+0x439): undefined reference to `ddot_'
tron.cpp:(.text+0x452): undefined reference to `ddot_'
tron.cpp:(.text+0x4c6): undefined reference to `daxpy_'
tron.cpp:(.text+0x4f2): undefined reference to `daxpy_'
tron.o: In function `TRON::tron(double*)':
tron.cpp:(.text+0x66d): undefined reference to `dnrm2_'
tron.cpp:(.text+0x6b6): undefined reference to `dnrm2_'
tron.cpp:(.text+0x777): undefined reference to `daxpy_'
tron.cpp:(.text+0x78d): undefined reference to `ddot_'
tron.cpp:(.text+0x7a9): undefined reference to `ddot_'
tron.cpp:(.text+0x7f1): undefined reference to `dnrm2_'
tron.cpp:(.text+0xa46): undefined reference to `dnrm2_'
collect2: error: ld returned 1 exit status
Makefile:22: recipe for target 'predict' failed


Reproducible: Always

Steps to Reproduce:
Try to compile.
Actual Results:  
Doesn't compile.

Expected Results:  
Compiles.
Comment 1 Jakub Panachida 2015-09-29 16:42:30 UTC
Portage 2.2.22 (python 3.3.5-final-0, default/linux/amd64/13.0/no-multilib, gcc-4.9.3, glibc-2.21-r1, 4.2.1-gentoo x86_64)
=================================================================
System uname: Linux-4.2.1-gentoo-x86_64-Intel-R-_Core-TM-_i5-4670_CPU_@_3.40GHz-with-gentoo-2.2
KiB Mem:    16358544 total,  12286828 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Tue, 29 Sep 2015 16:00:01 +0000
sh bash 4.3_p42
ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1
app-shells/bash:          4.3_p42::gentoo
dev-java/java-config:     2.2.0::gentoo
dev-lang/perl:            5.22.0::gentoo
dev-lang/python:          2.7.10::gentoo, 3.3.5-r2::gentoo, 3.4.3::gentoo
dev-util/cmake:           3.3.2::gentoo
dev-util/pkgconfig:       0.29::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/openrc:          0.17::gentoo
sys-apps/sandbox:         2.9::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r1::gentoo
sys-devel/automake:       1.11.6-r1::gentoo, 1.14.1::gentoo, 1.15::gentoo
sys-devel/binutils:       2.25.1-r1::gentoo
sys-devel/gcc:            4.9.3::gentoo
sys-devel/gcc-config:     1.8::gentoo
sys-devel/libtool:        2.4.6-r1::gentoo
sys-devel/make:           4.1-r1::gentoo
sys-kernel/linux-headers: 4.2::gentoo (virtual/os-headers)
sys-libs/glibc:           2.21-r1::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000

xenon
    location: /usr/local/portage
    masters: gentoo
    priority: 0

ACCEPT_KEYWORDS="amd64 ~amd64"                                                                                                                                                      
ACCEPT_LICENSE="*"                                                                                                                                                                  
CBUILD="x86_64-pc-linux-gnu"                                                                                                                                                        
CFLAGS="-march=native -O2 -fno-stack-protector -pipe -fomit-frame-pointer"                                                                                                          
CHOST="x86_64-pc-linux-gnu"                                                                                                                                                         
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt"                                                                     
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"                                                                                                    
CXXFLAGS="-march=native -O2 -fno-stack-protector -pipe"                                                                                                                             
DISTDIR="/usr/portage/distfiles"                                                                                                                                                    
EMERGE_DEFAULT_OPTS="--autounmask=n"                                                                                                                                                
FCFLAGS="-O2 -pipe"                                                                                                                                                                 
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync"                                                                                         
FFLAGS="-O2 -pipe"                                                                                                                                                                  
GENTOO_MIRRORS="ftp://gentoo.po.opole.pl http://gentoo.mirror.pw.edu.pl/ ftp://de-mirror.org/gentoo/"                                                                               
LANG="en_US.UTF-8"                                                                                                                                                                  
LC_ALL="en_US.UTF-8"                                                                                                                                                                
LDFLAGS="-Wl,-O1 -Wl,--as-needed"                                                                                                                                                   
MAKEOPTS="-j4"                                                                                                                                                                      
PKGDIR="/usr/portage/packages"                                                                                                                                                      
PORTAGE_CONFIGROOT="/"                                                                                                                                                              
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"                                                                                                                                        
PORTAGE_TMPDIR="/tmp"                                                                                                                                                               
USE="X a52 aac alsa amd64 berkdb bzip2 cdda cddb cdparanoia cli cracklib crypt cscope curl cxx dri dvd enca ffmpeg flac fortran gdbm gif gnutls gpm iconv imagemagick jpeg jpeg2k kde mad mmx mmxext modules mp3 mpeg musepack ncurses nptl ogg opengl openmp pam pcre png qt readline seccomp session sse sse2 ssh ssl svg tcpd theora tiff truetype unicode vorbis win32codecs x264 xvid zlib" ABI_X86="64" ALSA_CARDS="virtuoso hda-intel" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2 sse3 ssse3 sse4_1 sse4_2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="pc" INPUT_DEVICES="evdev keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3 python3_4" RUBY_TARGETS="ruby20 ruby21 ruby22" USERLAND="GNU" VIDEO_CARDS="intel vesa nvidia" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"  
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Comment 2 Jakub Panachida 2015-09-29 17:08:17 UTC
Removing the lines from ebuild:
    -e 's:blas/blas.a::g'
    LIBS=$($(tc-getPKG_CONFIG) --libs blas)
Solves the problem.
Comment 3 Jeroen Roovers (RETIRED) gentoo-dev 2015-09-30 04:53:07 UTC
Removed -r1.