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Bug 559254 - dev-libs/libxml2: /usr/bin/xmllint: symbol lookup error: /lib/libreadline.so.6: undefined symbol: UP
Summary: dev-libs/libxml2: /usr/bin/xmllint: symbol lookup error: /lib/libreadline.so....
Status: RESOLVED INVALID
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: [OLD] Unspecified (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Linux Gnome Desktop Team
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2015-08-31 12:21 UTC by José Pekkarinen
Modified: 2015-09-02 07:10 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


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Description José Pekkarinen 2015-08-31 12:21:41 UTC
Failed lookup when linking to readline 6.3_p8-r2.

Reproducible: Always

Steps to Reproduce:
1. emerge sssd
Actual Results:  
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sys-auth/sssd-1.12.1/work/sssd-1.12.1 ...
>>> Working in BUILD_DIR: "/var/tmp/portage/sys-auth/sssd-1.12.1/work/sssd-1.12.1"
make -j5 
make  all-recursive
make[1]: Entering directory '/var/tmp/portage/sys-auth/sssd-1.12.1/work/sssd-1.12.1'
Making all in po
make[2]: Entering directory '/var/tmp/portage/sys-auth/sssd-1.12.1/work/sssd-1.12.1/po'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/var/tmp/portage/sys-auth/sssd-1.12.1/work/sssd-1.12.1/po'
Making all in src/man
make[2]: Entering directory '/var/tmp/portage/sys-auth/sssd-1.12.1/work/sssd-1.12.1/src/man'
/usr/bin/xmllint --catalogs --postvalid --nonet --noent --xinclude --noout sss_useradd.8.xml
/usr/bin/xmllint --catalogs --postvalid --nonet --noent --xinclude --noout sss_userdel.8.xml
/usr/bin/xmllint --catalogs --postvalid --nonet --noent --xinclude --noout sss_usermod.8.xml
/usr/bin/xmllint --catalogs --postvalid --nonet --noent --xinclude --noout sss_groupadd.8.xml
/usr/bin/xmllint --catalogs --postvalid --nonet --noent --xinclude --noout sss_groupdel.8.xml
/usr/bin/xmllint: symbol lookup error: /lib/libreadline.so.6: undefined symbol: UP
Makefile:857: recipe for target 'sss_useradd.8' failed
make[2]: *** [sss_useradd.8] Error 127
make[2]: *** Waiting for unfinished jobs....
/usr/bin/xmllint: symbol lookup error: /lib/libreadline.so.6: undefined symbol: UP
Makefile:857: recipe for target 'sss_userdel.8' failed
make[2]: *** [sss_userdel.8] Error 127
/usr/bin/xmllint: symbol lookup error: /lib/libreadline.so.6: undefined symbol: UP
Makefile:857: recipe for target 'sss_groupadd.8' failed
make[2]: *** [sss_groupadd.8] Error 127
/usr/bin/xmllint: symbol lookup error: /lib/libreadline.so.6: undefined symbol: UP
Makefile:857: recipe for target 'sss_usermod.8' failed
make[2]: *** [sss_usermod.8] Error 127
/usr/bin/xmllint: symbol lookup error: /lib/libreadline.so.6: undefined symbol: UP
Makefile:857: recipe for target 'sss_groupdel.8' failed
make[2]: *** [sss_groupdel.8] Error 127
make[2]: Leaving directory '/var/tmp/portage/sys-auth/sssd-1.12.1/work/sssd-1.12.1/src/man'
Makefile:16825: recipe for target 'all-recursive' failed
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory '/var/tmp/portage/sys-auth/sssd-1.12.1/work/sssd-1.12.1'
Makefile:5755: recipe for target 'all' failed
make: *** [all] Error 2


Expected Results:  
Build correctly and install.

Portage 2.2.20.1 (python 2.7.9-final-0, default/linux/x86/13.0/desktop/kde, gcc-4.9.3, glibc-2.20-r2, 4.0.6 x86_64)
=================================================================
System uname: Linux-4.0.6-x86_64-Intel-R-_Core-TM-_i5-3340M_CPU_@_2.70GHz-with-gentoo-2.2
KiB Mem:     8047240 total,   1454080 free
KiB Swap:    8191996 total,   8191756 free
Timestamp of repository gentoo: Mon, 31 Aug 2015 06:00:01 +0000
sh bash 4.3_p39
ld GNU ld (Gentoo 2.24 p1.4) 2.24
distcc 3.1 i686-pc-linux-gnu [disabled]
app-shells/bash:          4.3_p39::gentoo
dev-java/java-config:     2.2.0::gentoo
dev-lang/perl:            5.20.2::gentoo
dev-lang/python:          2.7.9-r1::gentoo, 3.3.5-r1::gentoo, 3.4.1::gentoo
dev-util/cmake:           3.2.2::gentoo
dev-util/pkgconfig:       0.28-r2::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/openrc:          0.17::gentoo
sys-apps/sandbox:         2.6-r1::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69::gentoo
sys-devel/automake:       1.11.6-r1::gentoo, 1.13.4::gentoo, 1.15::gentoo
sys-devel/binutils:       2.24-r3::gentoo
sys-devel/gcc:            4.9.3::gentoo
sys-devel/gcc-config:     1.7.3::gentoo
sys-devel/libtool:        2.4.6::gentoo
sys-devel/make:           4.1-r1::gentoo
sys-kernel/linux-headers: 3.18::gentoo (virtual/os-headers)
sys-libs/glibc:           2.20-r2::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000

jpekkari-crossdev
    location: /usr/local/portage-crossdev
    masters: gentoo
    priority: 0

linuxunderground-overlay
    location: /var/lib/layman/linuxunderground-overlay
    masters: gentoo
    priority: 1

ACCEPT_KEYWORDS="x86"
ACCEPT_LICENSE="* -@EULA skype-4.0.0.7-copyright Intel-SDP AdobeFlash-11.x Oracle-BCLA-JavaSE"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -march=core-avx-i -mtune=core-avx-i -fomit-frame-pointer -pipe"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -march=core-avx-i -mtune=core-avx-i -fomit-frame-pointer -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -march=i686 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync"
FFLAGS="-O2 -march=i686 -pipe"
GENTOO_MIRRORS="rsync://trumpetti.atm.tut.fi/gentoo/"
LANG="en_GB.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j5"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
USE="X a52 aac acl acpi alsa beignet berkdb bluetooth branding bzip2 cairo cdda cdr cli consolekit cracklib crypt cups cxx dbus declarative dga dri dts dvd dvdr emboss encode exif fam firefox flac fortran gdbm gif glamor gnutls gpm hddtemp iconv ipv6 jpeg kde kipi kontact lcms ldap libnotify mad mng modules mp3 mp4 mpeg mplayer ncurses nls nptl nsplugin ogg openal opencl opengl openmp pam pango pcre pdf phonon plasma png policykit ppds pulseaudio qt3 qt3support qt4 quicktime readline samba sdl seccomp semantic-desktop session spell ssl startup-notification svg tcpd tiff truetype udev udisks unicode upower usb v4l vdpau vorbis wayland wifi win32codecs wxwidgets x264 x86 xcb xcomposite xinerama xml xscreensaver xv xvid zlib" ABI_X86="32" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="evdev synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en_GB fi es" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" QEMU_SOFTMMU_TARGETS="i386 x86_64 arm" QEMU_USER_TARGETS="i386 x86_64" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="intel i965" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
USE_PYTHON="2.7 3.3"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 1 Brian Evans (RETIRED) gentoo-dev 2015-09-01 17:37:05 UTC
(In reply to José Pekkarinen from comment #0)
> Failed lookup when linking to readline 6.3_p8-r2.
> 
> Reproducible: Always
> 

This is calling /usr/bin/xmllint, not linking to readline
Comment 2 Alexandre Rostovtsev (RETIRED) gentoo-dev 2015-09-01 18:17:49 UTC
Maybe libxml2, but more likely readline itself.

Please attach the outputs of "emerge --info libxml2 readline ncurses" and of 
"ldd -r /usr/bin/xmllint" and "ldd -r /lib/libreadline.so.6"

Perhaps you had updated to ncurses-6 or changed USE flags on ncurses and then deleted preserved libraries without rebuilding readline?
Comment 3 José Pekkarinen 2015-09-02 07:10:29 UTC
True! Closing.

Thanks!

José.