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Bug 557156 - [R_Overlay] SRC_URI of old ebuilds should point to the CRAN archive
Summary: [R_Overlay] SRC_URI of old ebuilds should point to the CRAN archive
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Overlays (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Benda Xu
URL:
Whiteboard:
Keywords:
Depends on: 557152
Blocks:
  Show dependency tree
 
Reported: 2015-08-09 17:13 UTC by stilriv
Modified: 2023-08-01 03:08 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
possible fix (mgcv-1.8.7.ebuild,384 bytes, text/plain)
2015-08-09 17:15 UTC, stilriv
Details

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Description stilriv 2015-08-09 17:13:00 UTC
Package mgcv was updated to 1.8-7 and so source for 1.8-6 was removed from http://cran.r-project.org/src/contrib/

Reproducible: Always

Steps to Reproduce:
emerge -1 =sci-CRAN/mgcv-1.8.6:0/0::R_Overlay
Actual Results:  
>>> Failed to emerge sci-CRAN/mgcv-1.8.6, Log file:


By the way there are also missing dependencies to sci-CRAN/nlme and sci-CRAN/Matrix

emerge -1 =sci-CRAN/mgcv-1.8.7::LocalOverlay 2>&1 | grep "ERROR\: dep"
ERROR: dependencies ‘nlme’, ‘Matrix’ are not available for package ‘mgcv’
Comment 1 stilriv 2015-08-09 17:15:37 UTC
Created attachment 408654 [details]
possible fix
Comment 2 Andrew Savchenko gentoo-dev 2015-08-16 11:15:03 UTC
Please provide:
* emerge --info output;
* build.log of the failed package.
Comment 3 Denis Dupeyron (RETIRED) gentoo-dev 2015-08-19 22:19:56 UTC
Please stop assigning these bugs to me. I am not the maintainer of the R overlay. Benda Xu (heroxbd) is.
Comment 4 Benda Xu gentoo-dev 2015-11-04 08:09:25 UTC
For CRAN archives, it is at present not considered.  Although we have a plan to do that.


The missing dependency is a feature, because R always ship those packages.

reference:  http://r.789695.n4.nabble.com/List-of-default-packages-that-come-with-R-td4661857.html
Comment 5 Jonas Stein gentoo-dev 2017-11-27 20:41:52 UTC
Hi, this was marked as in progress 2 years ago. Are there any news?
Comment 6 Benda Xu gentoo-dev 2017-11-28 02:51:33 UTC
Sorry no progress since then.

The size of the overlay becomes too large.  I think we'd better just delete the old versions.  What do you think?
Comment 7 Jonas Stein gentoo-dev 2017-11-28 08:18:43 UTC
yes, and you can remove
# $Header: $
in all ebuilds via script.
Comment 8 Benda Xu gentoo-dev 2017-11-29 11:52:28 UTC
(In reply to Jonas Stein from comment #7)
> yes, and you can remove
> # $Header: $
> in all ebuilds via script.

Yes indeed.

BTW, Jonas, are you interested in maintaining the R_Overlay together with me?
Comment 9 Jonas Stein gentoo-dev 2017-11-29 12:20:44 UTC
No, unfortunately I have no time for that.
Comment 10 Benda Xu gentoo-dev 2023-08-01 03:08:59 UTC
Fixed, thanks!