Created attachment 408336 [details] emerge log x86_64-pc-linux-gnu-g++ -c -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -O2 -pipe -I/usr/include/fltk -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_THREAD_SAFE -D_REENTRANT -Icsrc -I. -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF pseudoterminal.cxx pseudoterminal.cxx: In function ‘int run_external_prog_in_pseudoterm(char*, const char*, const char*)’: pseudoterminal.cxx:360:36: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] freopen(dialogfname, "r", stdin); ^ pseudoterminal.cxx:362:34: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] freopen(slavename, "a", stderr); ^ x86_64-pc-linux-gnu-g++ -c -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -O2 -pipe -I/usr/include/fltk -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_THREAD_SAFE -D_REENTRANT -Icsrc -I. -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF unrooted.cxx x86_64-pc-linux-gnu-g++ -c -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -O2 -pipe -I/usr/include/fltk -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_THREAD_SAFE -D_REENTRANT -Icsrc -I. -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF pdf_or_ps.cxx x86_64-pc-linux-gnu-g++ -c -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -O2 -pipe -I/usr/include/fltk -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_THREAD_SAFE -D_REENTRANT -Icsrc -I. -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF svg.cxx x86_64-pc-linux-gnu-g++ -c -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -O2 -pipe -I/usr/include/fltk -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_THREAD_SAFE -D_REENTRANT -Icsrc -I. -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF threads.cxx x86_64-pc-linux-gnu-gcc -c -O2 -pipe -Icsrc csrc/raa_acnuc.c x86_64-pc-linux-gnu-gcc -c -O2 -pipe -Icsrc csrc/parser.c x86_64-pc-linux-gnu-gcc -c -O2 -pipe -Icsrc csrc/md5.c x86_64-pc-linux-gnu-gcc -c -O2 -pipe -Icsrc csrc/zsockr.c x86_64-pc-linux-gnu-gcc -c -O2 -pipe -Icsrc csrc/misc_acnuc.c x86_64-pc-linux-gnu-gcc -c -O2 -pipe -Icsrc csrc/dnapars.c x86_64-pc-linux-gnu-gcc -c -O2 -pipe -Icsrc csrc/protpars.c x86_64-pc-linux-gnu-gcc -c -O2 -pipe -Icsrc csrc/lwl.c x86_64-pc-linux-gnu-gcc -c -O2 -pipe -Icsrc csrc/bionj.c x86_64-pc-linux-gnu-gcc -c -O2 -pipe -Icsrc csrc/phyml_util.c csrc/phyml_util.c: In function ‘Warn_And_Exit’: csrc/phyml_util.c:47:2: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(stdin,"%c",&c); ^ x86_64-pc-linux-gnu-g++ -o seaview -Wl,-O1 -Wl,--as-needed seaview.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o resource.o nexus.o viewasprots.o racnuc_fetch.o concatenate.o statistics.o trees.o treedraw.o addbootstrap.o least_squares_brl.o pseudoterminal.o unrooted.o pdf_or_ps.o svg.o threads.o raa_acnuc.o parser.o md5.o zsockr.o misc_acnuc.o dnapars.o protpars.o lwl.o bionj.o phyml_util.o \ -L/usr/lib64/fltk -Wl,-rpath,/usr/lib64/fltk -Wl,-O1 -Wl,--as-needed -lfltk_images -lz -lfltk -lXcursor -lXfixes -lXext -lXft -lpthread -ldl -lm -lX11 -lfltk_images -lfltk \ -lXft -lXext \ -lX11 -lm -lz -lpthread seaview.o: In function `clipboard_contains_alignment(char const*)': seaview.cxx:(.text+0x471b): undefined reference to `fl_selection_buffer' collect2: error: ld returned 1 exit status Makefile:46: recipe for target 'seaview' failed make: *** [seaview] Error 1 * ERROR: sci-biology/seaview-4.3.5::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=sci-biology/seaview-4.3.5::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-biology/seaview-4.3.5::gentoo'`. * The complete build log is located at '/var/log/portage/sci-biology:seaview-4.3.5:20150805-024349.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/seaview-4.3.5/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-biology/seaview-4.3.5/temp/environment'. * Working directory: '/var/tmp/portage/sci-biology/seaview-4.3.5/work/seaview' * S: '/var/tmp/portage/sci-biology/seaview-4.3.5/work/seaview' ----------------------------------------------------------------- This is an unstable amd64 chroot image (named amd64-desktop-unstable_20150802-115040) at a hardened host acting as a tinderbox. Portage 2.2.20 (python 3.4.3-final-0, default/linux/amd64/13.0/desktop, gcc-4.9.3, glibc-2.21-r1, 4.0.8-hardened x86_64) ================================================================= System uname: Linux-4.0.8-hardened-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2 KiB Mem: 16164692 total, 1139060 free KiB Swap: 0 total, 0 free Timestamp of repository gentoo: Wed, 05 Aug 2015 01:45:01 +0000 sh bash 4.3_p39 ld GNU ld (Gentoo 2.25.1 p1.0) 2.25.1 ccache version 3.2.2 [disabled] app-shells/bash: 4.3_p39::gentoo dev-java/java-config: 2.2.0::gentoo dev-lang/perl: 5.22.0::gentoo dev-lang/python: 2.7.10::gentoo, 3.4.3::gentoo dev-util/ccache: 3.2.2::gentoo dev-util/pkgconfig: 0.28-r3::gentoo sys-apps/baselayout: 2.2::gentoo sys-apps/openrc: 0.17::gentoo sys-apps/sandbox: 2.6-r1::gentoo sys-devel/autoconf: 2.13::gentoo, 2.69-r1::gentoo sys-devel/automake: 1.9.6-r4::gentoo, 1.11.6-r1::gentoo, 1.13.4::gentoo, 1.14.1::gentoo, 1.15::gentoo sys-devel/binutils: 2.25.1::gentoo sys-devel/gcc: 4.8.4::gentoo, 4.9.3::gentoo sys-devel/gcc-config: 1.8::gentoo sys-devel/libtool: 2.4.6-r1::gentoo sys-devel/make: 4.1-r1::gentoo sys-kernel/linux-headers: 4.1::gentoo (virtual/os-headers) sys-libs/glibc: 2.21-r1::gentoo Repositories: local location: /usr/local/portage masters: gentoo gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: 9999 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /etc/stunnel/stunnel.conf /var/spool/torque" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" CXXFLAGS="-O2 -pipe" DISTDIR="/var/tmp/distfiles" EMERGE_DEFAULT_OPTS="--nospinner --tree --quiet-build --accept-properties=-interactive --accept-restrict=-fetch" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j1" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" USE="X a52 aac acl acpi alsa amd64 apache2 berkdb bluetooth branding bzip2 cairo cdda cdr cli consolekit corefonts cracklib crypt cups curl custom-cflags cxx dbus dot dri dts dvd dvdr ecc elp emboss encode exif fam ffmpeg firefox flac fontconfig fortran fpm freetds gd gdbm gif glamor gnome-keyring gpm gtk gudev h hpn iconv inifile ipv6 jadetex jpeg kde kvm lcms ldap libnotify logrotate mad mbox minizip mmx mmxext mng modules mp3 mp4 mpeg multilib mysql mysqli ncurses nls nptl obj odbc offensive ogg opengl openmp pam pango pax_kernel pcre pdf pdo png policykit postgres ppds pwquality qemu qml qt3support qt4 qt5 readline sdl session sockets spell sqlite3 sse sse2 sse4 sse4_1 ssl ssse3 startup-notification svg system-jpeg system-sqlite tcl tcpd tiff tk truetype udev udisks unicode upower usb vorbis wxwidgets x264 xa xcb xml xmp xscreensaver xv xvid xvmc zenmap zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVI CES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en en_GB" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
I am getting same error here with 4.3.5 but current 4.5.4 does not have the problem. Justin, just revbump to new version. Thank you.
commit 68d94399d2dbcc0efa6835df6bef41475d5ddbc2 Author: Justin Lecher <jlec@gentoo.org> Date: Fri Nov 20 11:14:23 2015 +0100 sci-biology/seaview: Version Bump fixes compilation problems with newer fltk Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=556750 Package-Manager: portage-2.2.25 Signed-off-by: Justin Lecher <jlec@gentoo.org> https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=68d94399d2dbcc0efa6835df6bef41475d5ddbc2
