Gentoo Websites Logo
Go to: Gentoo Home Documentation Forums Lists Bugs Planet Store Wiki Get Gentoo!
Bug 556258 - sci-mathematics/cgal-4.3-r1 stable request
Summary: sci-mathematics/cgal-4.3-r1 stable request
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Mathematics related packages
URL:
Whiteboard: Was: sci-mathematics/cgal-4.3 (with c...
Keywords: STABLEREQ
: 566850 (view as bug list)
Depends on:
Blocks:
 
Reported: 2015-07-29 18:30 UTC by Juergen Rose
Modified: 2015-12-25 16:28 UTC (History)
4 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,9.94 KB, text/x-log)
2015-07-29 18:30 UTC, Juergen Rose
Details
/var/tmp/portage/sci-mathematics/cgal-4.3/work/cgal-4.3_build/CMakeFiles/CMakeOutput.log (CMakeOutput.log,63.74 KB, text/x-log)
2015-07-29 18:33 UTC, Juergen Rose
Details

Note You need to log in before you can comment on or make changes to this bug.
Description Juergen Rose 2015-07-29 18:30:32 UTC
Created attachment 407944 [details]
build.log

'MAKEOPTS=-j1 emerge -v1 cgal' fails with:
...
Configuring libCGAL
-- Requested component: MPFR
-- Requested component: GMPXX
-- Requested component: GMP
CMake Warning (dev) at src/CMakeLists.txt:51 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "CGAL".  Use the
  target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

Call Stack (most recent call first):
  src/CGAL/CMakeLists.txt:11 (collect_cgal_library)
This warning is for project developers.  Use -Wno-dev to suppress it.

libCGAL is configured
-- Sources for CGAL component library 'CGAL_Qt3/CMakeLists.txt' detected
CMake Error at src/CMakeLists.txt:81 (add_subdirectory):
  add_subdirectory given source
  "/var/tmp/portage/sci-mathematics/cgal-4.3/work/CGAL-4.3/src/CGAL_Qt3/CMakeLists.txt"
  which is not an existing directory.
Call Stack (most recent call first):
  src/CMakeLists.txt:139 (configure_component)
...
-- Configuring incomplete, errors occurred!
See also "/var/tmp/portage/sci-mathematics/cgal-4.3/work/cgal-4.3_build/CMakeFiles/CMakeOutput.log".
 * ERROR: sci-mathematics/cgal-4.3::gentoo failed (configure phase):





root@lynx:/root(34)# emerge --info '=sci-mathematics/cgal-4.3::gentoo'
Portage 2.2.20 (python 2.7.10-final-0, default/linux/amd64/13.0/desktop, gcc-4.9.3, glibc-2.21-r1, 4.1.3-gentoo x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-4.1.3-gentoo-x86_64-Intel-R-_Core-TM-_i7-3630QM_CPU_@_2.40GHz-with-gentoo-2.2
KiB Mem:     6962404 total,    882128 free
KiB Swap:   12582908 total,  11864172 free
Timestamp of repository gentoo: Wed, 29 Jul 2015 11:30:01 +0000
sh bash 4.3_p39
ld GNU ld (Gentoo 2.25.1 p1.0) 2.25.1
distcc[17639] (dcc_trace_version) distcc 3.2rc1 x86_64-pc-linux-gnu; built Feb 28 2015 11:00:31 [disabled]
app-shells/bash:          4.3_p39::gentoo
dev-java/java-config:     2.2.0::gentoo
dev-lang/perl:            5.22.0::gentoo
dev-lang/python:          2.7.10::gentoo, 3.4.3::gentoo
dev-util/cmake:           3.3.0::gentoo
dev-util/pkgconfig:       0.28-r3::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/openrc:          0.17::gentoo
sys-apps/sandbox:         2.6-r1::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r1::gentoo
sys-devel/automake:       1.9.6-r4::gentoo, 1.10.3-r1::gentoo, 1.11.6-r1::gentoo, 1.12.6::gentoo, 1.13.4::gentoo, 1.14.1::gentoo, 1.15::gentoo
sys-devel/binutils:       2.25.1::gentoo
sys-devel/gcc:            4.9.3::gentoo
sys-devel/gcc-config:     1.8::gentoo
sys-devel/libtool:        2.4.6-r1::gentoo
sys-devel/make:           4.1-r1::gentoo
sys-kernel/linux-headers: 4.1::gentoo (virtual/os-headers)
sys-libs/glibc:           2.21-r1::gentoo
Repositories:

gentoo
    location: /usr/portage_lynx
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000

sage-on-gentoo
    location: /var/lib/layman/sage-on-gentoo
    masters: gentoo
    priority: 0

science
    location: /var/lib/layman/science
    masters: gentoo
    priority: 1

sunrise
    location: /var/lib/layman/sunrise
    masters: gentoo
    priority: 2

tlp
    location: /var/lib/layman/tlp
    masters: gentoo
    priority: 3

x11
    location: /var/lib/layman/x11
    masters: gentoo
    priority: 4

ago
    location: /var/lib/layman/ago
    masters: gentoo
    priority: 5

local
    location: /usr/local/portage
    masters: gentoo
    priority: 6

g-cpan
    location: /var/lib/cpan
    masters: gentoo
    priority: 7

g-octave
    location: /var/lib/g-octave
    masters: gentoo
    priority: 8

Installed sets: @system
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA PUEL Intel-SDP dlj-1.1 skype-eula skype-4.0.0.7-copyright googleearth AdobeFlash-11.x cadsoft Oracle-BCLA-JavaSE MakeMKV-EULA NVIDIA-CUDA Nero-AAC-EULA GIMPS"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /etc/stunnel/stunnel.conf /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.6/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-march=native -O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j9"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
USE="64bit R X Xaw3d a52 aac acl acpi admin afs alsa amd64 amr ao apache2 apng applet archive armadillo arpack asf aspell assistant atlas audacious audiofile automap automount bash-completion berkdb blas blast bluetooth bluray boost branding bzip2 cairo cdda cddb cdf cdio cdparanoia cdr cg cgi chm cli cmake collada consolekit cracklib crypt css cups curl cxx daap db dbi dbm dbus declarative designer devhelp device-mapper dga dia dirac djvu doc dot dri ds2490 ds9097 ds9097u dts dv dvb dvd dvdr dvi dynamicplugin eds egl elf emacs emboss emf encode epiphany evo examples excel exif expat extensions extra extras faac faad fam ffmpeg fftw firefox fits flac fltk fontconfig foomaticdb fortran fortran95 fpm fpx ftp fuse g3dvl garmin gcj gd gdal gdbm gdu gedit geoip geolocation geos gfortran gif gimp git glade glamor glib glpk gml gmp gnome gnome-keyring gnome-print gnuplot gnutls gold gphoto2 gpm grammar graphics graphtft graphviz grass gsl gsm gstreamer gtk gtk3 gudev guile hdaps hddtemp hdf hdf5 hdri html http httpd hvm hwdb iconv icq icu id3tag ide imagemagick imap inotify introspection ipod ipv6 irda ithreads jabber jadetex java java6 jbig jit john jpeg jpeg2k kate kde kdepim kdrive kerberos keymap kpathsea kvm ladspa lame lapack laptop latex lcms ldap lensfun libffi libgda libkms libnotify libsamplerate lirc live lua lzma lzo mad mail maildir mapnik math matroska media-library mercurial mikmod mkl mmx mmxext mng mod modules mono motif mozilla mp3 mp4 mpeg mpi mpi-threads mplayer mtp multilib multimedia musepack musicbrainz mysql mysqli nautilus ncurses neXt netcdf netpbm network networking nfs nls nntp nptl nsplugin ntfs ntp numpy obex objc ocaml ocr octave odbc ofa ogdi ogg openexr opengl openmp openvg pam pango pcre pda pdf perl plasma plotutils plugins png podcast policykit portaudio posix postgres postscript ppds preview-latex proj projectm pstricks pulseaudio python python-bindings q16 q32 qemu qhull qt3support qt4 qt5 quicktime raw readline reiserfs reports rle romio rpc rrdcgi rrdtool sage samba sasl schroedinger science sdk sdl secure-delete semantic-desktop server session shout sip slang slp smart smbclient smp sms sndfile snmp soap sockets sound soup sox speex spell sql sqlite sse sse2 sse3 sse4 sse4_1 sse4_2 ssl ssse3 startup-notification stlport subtitles subversion sudo suexec svg svm swig systemd szip t1lib tcl tcpd tex tex4ht texmacs theora thesaurus thinkpad threads thunderbird tidy tiff tk tools truetype udev udisks unicode upower usb utempter v4l v4l2 vaapi vala valgrind vdpau video virt-network virtualbox visio vorbis vpx vtk wav webdav webdav-serf webkit wifi wmf wxwidgets x264 xa xattr xcb xetex xext xft xine xml xmlreader xmlrpc xpm xv xvid xvmc yaml youtube zlib zvbi" ABI_X86="64" ALSA_CARDS="intel8x0" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_core authn_dbm authn_default authn_file authz_core authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info lbmethod_byrequests log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif slotmem_shm so socache_shmcb speling status unique_id unixd userdir usertrack vhost_alias" APACHE2_MPMS="worker" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="canon fuji ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog sensors thermal" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" CURL_SSL="nss" DVB_CARDS="usb-wt220u" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev synaptics void" KERNEL="linux" LCD_DEVICES="cfontz hd44780 mtxorb ncurses X lcd2usb lcdlinux png usblcd SureElec" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="de en fr ru" NETBEANS_MODULES="apisupport cnd dlight enterprise ergonomics groovy gsf harness ide identity j2ee java mobility nb php profiler websvccommon xml" OFFICE_IMPLEMENTATION="libreoffice" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" QEMU_SOFTMMU_TARGETS="arm i386 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="nouveau displaylink" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON

=================================================================
                        Package Settings
=================================================================

sci-mathematics/cgal-4.3::gentoo was built with the following:
USE="doc examples gmp qt4 -mpfi" ABI_X86="64"





root@lynx:/root(35)# emerge -pqv '=sci-mathematics/cgal-4.3::gentoo'
[ebuild   R   ] sci-mathematics/cgal-4.3  USE="doc examples gmp qt4 -mpfi"
Comment 1 Juergen Rose 2015-07-29 18:33:50 UTC
Created attachment 407946 [details]
/var/tmp/portage/sci-mathematics/cgal-4.3/work/cgal-4.3_build/CMakeFiles/CMakeOutput.log
Comment 2 Jouni Kosonen 2015-07-29 20:15:02 UTC
It's trying to build with qt3 support, even though cmakeargs should contain -DWITH_CGAL_Qt3=OFF... 

From build.log
>>> Configuring source in /var/tmp/portage/sci-mathematics/cgal-4.3/work/CGAL-4.3 ...
/var/tmp/portage/sci-mathematics/cgal-4.3/temp/environment: line 2826: local: `mycmakeargs+': not a valid identifier

Maybe change line 55 in the ebuild?

55c55
<       local mycmakeargs+=(
---
>       local mycmakeargs=(
Comment 3 Juergen Rose 2015-07-30 08:18:34 UTC
(In reply to Jouni Kosonen from comment #2)
> It's trying to build with qt3 support, even though cmakeargs should contain
> -DWITH_CGAL_Qt3=OFF... 
> 
> From build.log
> >>> Configuring source in /var/tmp/portage/sci-mathematics/cgal-4.3/work/CGAL-4.3 ...
> /var/tmp/portage/sci-mathematics/cgal-4.3/temp/environment: line 2826:
> local: `mycmakeargs+': not a valid identifier
> 
> Maybe change line 55 in the ebuild?
> 
> 55c55
> <       local mycmakeargs+=(
> ---
> >       local mycmakeargs=(

I substituted local mycmakeargs+= local mycmakeargs= in the cgal-4.3.ebuild.

root@lynx:/usr/local/portage/sci-mathematics/cgal(16)# grep mycmakeargs  cgal-4.3.ebuild 
        local mycmakeargs=(

But it fails as well with the same error. In /var/tmp/portage/sci-mathematics/cgal-4.3/temp/environment I find now:

root@lynx:/usr/local/portage/sci-mathematics/cgal(18)# grep mycmakeargs /var/tmp/portage/sci-mathematics/cgal-4.3/temp/environment
    if [[ $(declare -p mycmakeargs 2>&-) != "declare -a mycmakeargs="* ]]; then
        local mycmakeargs_local=(${mycmakeargs});
        local mycmakeargs_local=("${mycmakeargs[@]}");
    local cmakeargs=(${warn_unused_cli} -C "${common_config}" -G "$(_generator_to_use)" -DCMAKE_INSTALL_PREFIX="${EPREFIX}${PREFIX}" "${mycmakeargs_local[@]}" -DCMAKE_BUILD_TYPE="${CMAKE_BUILD_TYPE}" -DCMAKE_INSTALL_DO_STRIP=OFF -DCMAKE_USER_MAKE_RULES_OVERRIDE="${build_rules}" -DCMAKE_TOOLCHAIN_FILE="${toolchain_file}" "${MYCMAKEARGS}");
    debug-print "${LINENO} ${ECLASS} ${FUNCNAME}: mycmakeargs is ${mycmakeargs_local[*]}";
    local mycmakeargs=(-DCGAL_INSTALL_LIB_DIR=$(get_libdir) -DWITH_CGAL_Qt3=OFF -DWITH_LEDA=OFF $(cmake-utils_use_with gmp) $(cmake-utils_use_with gmp GMPXX) $(cmake-utils_use_with qt4 CGAL_Qt4) $(cmake-utils_use_with mpfi));
Comment 4 Michael Weber (RETIRED) gentoo-dev 2015-07-31 07:08:48 UTC
This might be a duplicate of bug 556130
Comment 5 Helmut Jarausch 2015-08-07 09:28:28 UTC
Use version 4.6.1 see my ebuild on
https://bugs.gentoo.org/show_bug.cgi?id=556130
Comment 6 Michael Weber (RETIRED) gentoo-dev 2015-08-08 10:43:25 UTC
+*cgal-4.3-r1 (08 Aug 2015)
+
+  08 Aug 2015; Michael Weber <xmw@gentoo.org> +cgal-4.3-r1.ebuild,
+  +files/cgal-4.3-cmake-3.3.patch, cgal-4.3.ebuild:
+  Revbump to cmakeargs variable name, adjust policy for cmake-3.3 and fix subdir
+  walking (bugs 556258, 556130). Add slot on mpfr.
+
Comment 7 Juergen Rose 2015-08-09 00:15:36 UTC
(In reply to Michael Weber from comment #6)
> +*cgal-4.3-r1 (08 Aug 2015)
> +
> +  08 Aug 2015; Michael Weber <xmw@gentoo.org> +cgal-4.3-r1.ebuild,
> +  +files/cgal-4.3-cmake-3.3.patch, cgal-4.3.ebuild:
> +  Revbump to cmakeargs variable name, adjust policy for cmake-3.3 and fix
> subdir
> +  walking (bugs 556258, 556130). Add slot on mpfr.
> +

'emerge cgal' fails now with:

root@lynx:/usr/local/portage/sci-mathematics(51)#  emerge -v1  cgal

These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild     U  ] sci-mathematics/cgal-4.6.1::gentoo [4.3::gentoo] USE="doc examples gmp qt4 -mpfi" 0 KiB

Total: 1 package (1 upgrade), Size of downloads: 0 KiB


>>> Verifying ebuild manifests

>>> Emerging (1 of 1) sci-mathematics/cgal-4.6.1::gentoo
 * CGAL-4.6.1.tar.xz SHA256 SHA512 WHIRLPOOL size ;-) ...                                                                 [ ok ]
 * CGAL-4.6.1-doc_html.tar.xz SHA256 SHA512 WHIRLPOOL size ;-) ...                                                        [ ok ]
>>> Unpacking source...
>>> Unpacking CGAL-4.6.1.tar.xz to /var/tmp/portage/sci-mathematics/cgal-4.6.1/work
>>> Unpacking CGAL-4.6.1-doc_html.tar.xz to /var/tmp/portage/sci-mathematics/cgal-4.6.1/work
xz: /var/tmp/portage/sci-mathematics/cgal-4.6.1/distdir/CGAL-4.6.1-doc_html.tar.xz: File format not recognized
tar: This does not look like a tar archive
tar: Exiting with failure status due to previous errors
 * ERROR: sci-mathematics/cgal-4.6.1::gentoo failed (unpack phase):
 *   unpack: failure unpacking CGAL-4.6.1-doc_html.tar.xz
Comment 8 Juergen Rose 2015-08-09 00:20:56 UTC
 'USE=-doc  emerge -v1  cgal' works.
Comment 9 Michael Weber (RETIRED) gentoo-dev 2015-08-09 16:55:08 UTC
(In reply to Juergen Rose from comment #8)
>  'USE=-doc  emerge -v1  cgal' works.

handling this in bug 557056
Comment 10 Brian Evans (RETIRED) gentoo-dev 2015-11-25 19:19:32 UTC
*** Bug 566850 has been marked as a duplicate of this bug. ***
Comment 11 Cássio Pereira 2015-11-26 14:21:33 UTC
I don't get it. The bug I created 566850 has been marked as a duplicate of this and this is marked as resolved. How come my emerge still fails?
Comment 12 Cássio Pereira 2015-11-26 14:25:23 UTC
Just to add,  'USE=-doc  emerge -v1  cgal' does NOT work for me.
Comment 13 Ian Stakenvicius (RETIRED) gentoo-dev 2015-11-26 15:39:09 UTC
Reopening. this may be fixed in 4.3-r1 but cmake-3.3 just went stable and 4.3-r1 hasn't been stabilized yet.

Can you give the OK to stabilize 4.3-r1 and CC arches to close this bug for good?
Comment 14 Agostino Sarubbo gentoo-dev 2015-12-25 15:42:54 UTC
amd64 stable
Comment 15 Agostino Sarubbo gentoo-dev 2015-12-25 16:28:43 UTC
x86 stable. Closing.