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Bug 555160 - dev-python/pypy-bin-2.5.1 : ./pypy-c: symbol lookup error: /var/tmp/portage/dev-python/pypy-bin-2.5.1/work/pypy-2.5.1-src/libpypy-c.so: undefined symbol: EC_KEY_free
Summary: dev-python/pypy-bin-2.5.1 : ./pypy-c: symbol lookup error: /var/tmp/portage/d...
Status: RESOLVED OBSOLETE
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Python Gentoo Team
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2015-07-17 08:45 UTC by Toralf Förster
Modified: 2020-02-03 06:35 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
package history (dev-python-pypy-bin-2.5.1-20150717-062501.pks,64.71 KB, text/plain)
2015-07-17 08:45 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2015-07-17 08:45:41 UTC
Created attachment 406988 [details]
package history

* Package:    dev-python/pypy-bin-2.5.1
 * Repository: gentoo
 * Maintainer: alicef@gentoo.org python@gentoo.org
 * USE:        abi_x86_64 amd64 elibc_glibc gdbm jit kernel_linux tk userland_GNU
 * FEATURES:   preserve-libs sandbox userpriv usersandbox
>>> Unpacking source...
>>> Unpacking pypy-2.5.1-src.tar.bz2 to /var/tmp/portage/dev-python/pypy-bin-2.5.1/work
>>> Unpacking pypy-bin-2.5.1-amd64+bzip2+jit+ncurses.tar.xz to /var/tmp/portage/dev-python/pypy-bin-2.5.1/work
>>> Source unpacked in /var/tmp/portage/dev-python/pypy-bin-2.5.1/work
>>> Preparing source in /var/tmp/portage/dev-python/pypy-bin-2.5.1/work/pypy-2.5.1-src ...
 * Applying 1.9-scripts-location.patch ...
 [ ok ]
 * Applying 1.9-distutils.unixccompiler.UnixCCompiler.runtime_library_dir_option.patch ...
 [ ok ]
 * Applying 2.5.0_all_distutils_cxx.patch ...
 [ ok ]
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/dev-python/pypy-bin-2.5.1/work/pypy-2.5.1-src ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/dev-python/pypy-bin-2.5.1/work/pypy-2.5.1-src ...
 *      pypy-c
 * PT PaX marking -m pypy-c with paxctl
./pypy-c: symbol lookup error: /var/tmp/portage/dev-python/pypy-bin-2.5.1/work/pypy-2.5.1-src/libpypy-c.so: undefined symbol: EC_KEY_free
 * ERROR: dev-python/pypy-bin-2.5.1::gentoo failed (compile phase):
 *   Failed to rebuild ctypes config cache
 * 
 * Call stack:
 *     ebuild.sh, line  93:  Called src_compile
 *   environment, line 3017:  Called die
 * The specific snippet of code:
 *       ./pypy-c lib_pypy/ctypes_config_cache/rebuild.py || die "Failed to rebuild ctypes config cache"
 * 
 * If you need support, post the output of `emerge --info '=dev-python/pypy-bin-2.5.1::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=dev-python/pypy-bin-2.5.1::gentoo'`.
 * The complete build log is located at '/var/log/portage/dev-python:pypy-bin-2.5.1:20150717-062501.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/dev-python/pypy-bin-2.5.1/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/dev-python/pypy-bin-2.5.1/temp/environment'.
 * Working directory: '/var/tmp/portage/dev-python/pypy-bin-2.5.1/work/pypy-2.5.1-src'
 * S: '/var/tmp/portage/dev-python/pypy-bin-2.5.1/work/pypy-2.5.1-src'

  -----------------------------------------------------------------

  This is an unstable amd64 chroot image (named amd64-kde-unstable_20150716-153903/) at a hardened host acting as a tinderbox.

Portage 2.2.20 (python 2.7.10-final-0, default/linux/amd64/13.0/desktop/kde, gcc-4.9.3, glibc-2.20-r2, 4.0.8-hardened x86_64)
=================================================================
System uname: Linux-4.0.8-hardened-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2
KiB Mem:    16164692 total,   2978076 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Fri, 17 Jul 2015 05:45:01 +0000
sh bash 4.3_p39
ld GNU ld (Gentoo 2.25 p1.2) 2.25
app-shells/bash:          4.3_p39::gentoo
dev-lang/perl:            5.20.2::gentoo
dev-lang/python:          2.7.10::gentoo, 3.3.5-r1::gentoo
dev-util/pkgconfig:       0.28-r2::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/openrc:          0.17::gentoo
sys-apps/sandbox:         2.6-r1::gentoo
sys-devel/autoconf:       2.69::gentoo
sys-devel/automake:       1.11.6-r1::gentoo, 1.14.1::gentoo
sys-devel/binutils:       2.25-r1::gentoo
sys-devel/gcc:            4.8.4::gentoo, 4.9.3::gentoo
sys-devel/gcc-config:     1.7.3::gentoo
sys-devel/libtool:        2.4.6::gentoo
sys-devel/make:           4.1-r1::gentoo
sys-kernel/linux-headers: 3.18::gentoo (virtual/os-headers)
sys-libs/glibc:           2.20-r2::gentoo
Repositories:

local
    location: /usr/local/portage
    masters: gentoo

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: 9999

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/var/tmp/distfiles"
EMERGE_DEFAULT_OPTS="--nospinner --tree --quiet-build"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
USE="X a52 aac acl acpi aes-ni alsa amd64 apache2 avx avx2 berkdb bluetooth branding btrfs bzip2 cairo cdda cdr cgi cli consolekit corefonts cracklib crypt cups curl cxx dbus declarative designer dnssec dot dri drmkms dts dvd dvdr ecc emboss encode exif extraengine fam ffmpeg firefox flac fpm gd gdbm gif glamor gpm gtk gudev gui iconv icu imap inifile introspection jadetex kde kipi kvm lapack lcms libkms libnotify libvirtd logrotate mad mbox minizip mmx mmxext mng modules mp3 mp4 mpeg multilib mysql ncurses nls nptl ogg opencv opengl openmp openssl pam pango pax_kernel pcre pcre16 pdf pdo phonon plasma png policykit ppds pulseaudio python qml qt3support qt4 qt5 readline scrpyt session smartcard sockets spell spice sse sse2 sse4 sse4_1 sse4_2 ssl ssse3 startup-notification tcl tcpd theora threads tiff tk tls udev udisks uml unicode upower usb usbredir uxa widgets wxwidgets x264 xcb xcomposite xinerama xkb xml xmp xslt xv xvfb xvid xvmc zenmap zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" CURL_SSL="nss" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserv er oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en en_GB" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Comment 1 Mike Gilbert gentoo-dev 2015-07-17 14:58:32 UTC
Unless you are specifically trying to break things, I would suggest that you remove USE="bindist" from make.conf.

+  17 Jul 2015; Mike Gilbert <floppym@gentoo.org> pypy-bin-2.3.1-r2.ebuild,
+  pypy-bin-2.4.0.ebuild, pypy-bin-2.5.1.ebuild, pypy-bin-2.6.0.ebuild:
+  Require openssl with bindist disabled to avoid missing symbols, bug 555160.
Comment 2 Toralf Förster gentoo-dev 2015-07-17 15:12:30 UTC
(In reply to Mike Gilbert from comment #1)
> Unless you are specifically trying to break things, I would suggest that you
> remove USE="bindist" from make.conf.
> 
> +  17 Jul 2015; Mike Gilbert <floppym@gentoo.org> pypy-bin-2.3.1-r2.ebuild,
> +  pypy-bin-2.4.0.ebuild, pypy-bin-2.5.1.ebuild, pypy-bin-2.6.0.ebuild:
> +  Require openssl with bindist disabled to avoid missing symbols, bug
> 555160.

It *is* unset, :

$ grep -B5 bindist amd64-kde-unstable_20150716-153903/etc/portage/make.conf
# WARNING: Changing your CHOST is not something that should be done lightly.
# Please consult http://www.gentoo.org/doc/en/change-chost.xml before changing.
CHOST="x86_64-pc-linux-gnu"
# These are the USE flags that were used in addition to what is provided by the
# profile used for building.
#USE="bindist mmx sse sse2"
--
USE="aes-ni apache2 btrfs cairo cgi corefonts cups dbus designer dnssec dot
     drmkms dvd ecc extraengine fpm gudev gui icu jadetex lapack libkms
     logrotate mbox minizip openssl pax_kernel pcre16 plasma policykit python
     qt3support qml spice avx avx2 mmx sse sse2 sse4 sse4_1 sse4_2 ssse3 uml
     usb usbredir xkb xslt xvfb xvmc zenmap
     -bindist -hpn -ldap -offensive -semantic-desktop
Comment 3 Mike Gilbert gentoo-dev 2015-07-17 15:24:42 UTC
Apologies. What version of openssl do you have installed?
Comment 4 Toralf Förster gentoo-dev 2015-07-17 15:54:53 UTC
In the mean while :

tor-relay / # qlop -l -H openssl
Fri Jul 17 12:15:46 2015 >>> dev-libs/openssl-1.0.2d

tor-relay / # ls -l /etc/portage/make.conf
-rw-rw-rw- 1 root root 2519 Jul 17 11:55 /etc/portage/make.conf

IIRC I changed the USE flag today before lunch from "-openssl" to "" - this is a chroot tinderbox and I'm still playing with finding a "good" randomized USE flag setting.
Comment 5 Michał Górny archtester Gentoo Infrastructure gentoo-dev Security 2015-07-17 17:18:04 UTC
I wonder if it wouldn't be better to have bindist-friendly pypy-bin variant.
Comment 6 Michał Górny archtester Gentoo Infrastructure gentoo-dev Security 2020-02-03 06:35:10 UTC
It is gone.