Created attachment 406890 [details] config log checking for GNU libc compatible realloc... yes checking whether lstat correctly handles trailing slash... yes checking whether stat accepts an empty string... no checking for strftime... yes checking for floor... no checking for memset... yes checking for pow... no checking for sqrt... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking for isblank... yes +++++++++++++++++++++++++++++++++++++ CFLAGS now: -march=native -O2 -pipe -I/usr/include CXXFLAGS now: -DAJ_Linux64 -march=native -O2 -pipe -I/usr/include LDFLAGS now: -Wl,-O1 -Wl,--as-needed -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking whether the compiler implements namespaces... yes checking whether the compiler supports ISO C++ standard library... yes checking whether the compiler supports Standard Template Library... yes checking for boostlib >= 1.46.0... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -I/usr/lib64/include BOOST LDFLAGS: -L/usr/lib64 ac_boost_path: /usr/lib64 ac_boost_lib_path: /usr/lib64 CFLAGS now: -march=native -O2 -pipe -I/usr/include CXXFLAGS now: -DAJ_Linux64 -march=native -O2 -pipe -I/usr/include LDFLAGS now: -Wl,-O1 -Wl,--as-needed -L/usr/lib +++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -I/usr/lib64/include BOOST LDFLAGS: -L/usr/lib64 CFLAGS now: -march=native -O2 -pipe -I/usr/include -Wl,-rpath,/usr/lib64 CXXFLAGS now: -DAJ_Linux64 -march=native -O2 -pipe -I/usr/include LDFLAGS now: -Wl,-O1 -Wl,--as-needed -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking whether the Boost::Thread library is available... yes checking for exit in -lboost_thread-mt... no checking for exit in -lboost_thread-boost_thread-mt... no configure: error: Could not link against boost_thread-boost_thread-mt ! !!! Please attach the following file when seeking support: !!! /var/tmp/portage/sci-biology/mira-3.9.18/work/mira-3.9.18/config.log * ERROR: sci-biology/mira-3.9.18::gentoo failed (configure phase): * econf failed * * Call stack: * ebuild.sh, line 93: Called src_configure * environment, line 2703: Called econf '--with-boost=/usr/lib64' '--with-boost-libdir=/usr/lib64' '--with-boost-thread=boost_thread-mt' * phase-helpers.sh, line 662: Called __helpers_die 'econf failed' * isolated-functions.sh, line 117: Called die * The specific snippet of code: * die "$@" * * If you need support, post the output of `emerge --info '=sci-biology/mira-3.9.18::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-biology/mira-3.9.18::gentoo'`. * The complete build log is located at '/var/log/portage/sci-biology:mira-3.9.18:20150716-035947.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/mira-3.9.18/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-biology/mira-3.9.18/temp/environment'. * Working directory: '/var/tmp/portage/sci-biology/mira-3.9.18/work/mira-3.9.18' * S: '/var/tmp/portage/sci-biology/mira-3.9.18/work/mira-3.9.18' ----------------------------------------------------------------- This is an stable amd64 chroot image (named amd64-hardened-stable_20150708-150300) at a hardened host acting as a tinderbox. Portage 2.2.18 (python 2.7.9-final-0, hardened/linux/amd64, gcc-4.8.4, glibc-2.20-r2, 4.0.8-hardened x86_64) ================================================================= System uname: Linux-4.0.8-hardened-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2 KiB Mem: 16164692 total, 806244 free KiB Swap: 0 total, 0 free Timestamp of repository gentoo: Thu, 16 Jul 2015 01:45:01 +0000 sh bash 4.3_p33-r2 ld GNU ld (Gentoo 2.24 p1.4) 2.24 ccache version 3.1.9 [disabled] app-shells/bash: 4.3_p33-r2::gentoo dev-java/java-config: 2.2.0::gentoo dev-lang/perl: 5.20.2::gentoo dev-lang/python: 2.7.9-r1::gentoo, 3.3.5-r1::gentoo dev-util/ccache: 3.1.9-r4::gentoo dev-util/pkgconfig: 0.28-r2::gentoo sys-apps/baselayout: 2.2::gentoo sys-apps/openrc: 0.17::gentoo sys-apps/sandbox: 2.6-r1::gentoo sys-devel/autoconf: 2.69::gentoo sys-devel/automake: 1.9.6-r4::gentoo, 1.11.6-r1::gentoo, 1.13.4::gentoo, 1.14.1::gentoo sys-devel/binutils: 2.24-r3::gentoo sys-devel/gcc: 4.8.4::gentoo sys-devel/gcc-config: 1.7.3::gentoo sys-devel/libtool: 2.4.6::gentoo sys-devel/make: 4.1-r1::gentoo sys-kernel/linux-headers: 3.18::gentoo (virtual/os-headers) sys-libs/glibc: 2.20-r2::gentoo Repositories: local location: /usr/local/portage masters: gentoo gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: 9999 ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /etc/stunnel/stunnel.conf /usr/share/config /usr/share/easy-rsa /var/spool/torque" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/var/tmp/distfiles" EMERGE_DEFAULT_OPTS="--nospinner --tree --quiet-build" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j1" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" USE="acl aes-ni alsa amd64 apache2 avx avx2 berkdb btrfs bzip2 cairo cgi cli corefonts cracklib crypt cups curl cxx dbus designer dnssec dot dri drmkms dvd ecc extraengine fortran fpm gd gdbm gif gnutls gtk gudev gui hardened iconv icu imap introspection ipv6 jadetex jpeg justify kvm lapack libkms libvirtd logrotate mbox minizip mmx mmxext modules multilib mysql ncurses nls nptl nss opencv openmp pam pax_kernel pcre pcre16 pdo pie plasma png policykit pulseaudio pwquality python qml qt3support qt4 qt5 readline scrpyt sdl session smartcard spice sqlite sse sse2 sse4 sse4_1 sse4_2 ssh-askpass ssl ssp ssse3 tcl tcpd tls truetype uml unicode urandom usb usbredir v4l v4l2 video widgets xattr xkb xscreensaver xslt xtpax xvfb xvmc zenmap zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" CURL_SSL="nss" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb nc urses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en en_GB" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Created attachment 406892 [details] emerge log
Created attachment 406894 [details] package history
+ 03 Aug 2015; Justin Lecher <jlec@gentoo.org> -mira-3.9.18.ebuild: + Drop old; obsoletes bug #555044 +
