Created attachment 406226 [details] emerge log ^ src/mpi4py.MPI.c:112700:30: error: ‘MPI_MAX_DATAREP_STRING’ undeclared (first use in this function) __pyx_t_9 = PyInt_FromLong(MPI_MAX_DATAREP_STRING); if (unlikely(!__pyx_t_9)) {__pyx_filename = __pyx_f[27]; __pyx_lineno = 245; __pyx_clineno = __LINE__; goto __pyx_L1_error;} ^ error: command '/usr/bin/mpicc' failed with exit status 1 * ERROR: dev-python/mpi4py-1.3.1::gentoo failed (compile phase): * (no error message) * * Call stack: * ebuild.sh, line 93: Called src_compile * environment, line 3877: Called distutils-r1_src_compile * environment, line 1261: Called _distutils-r1_run_foreach_impl 'distutils-r1_python_compile' * environment, line 401: Called python_foreach_impl 'distutils-r1_run_phase' 'distutils-r1_python_compile' * environment, line 3447: Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile' * environment, line 2571: Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile' * environment, line 2569: Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'distutils-r1_python_compile' * environment, line 851: Called distutils-r1_run_phase 'distutils-r1_python_compile' * environment, line 1252: Called distutils-r1_python_compile * environment, line 1137: Called esetup.py 'build' * environment, line 1740: Called die * The specific snippet of code: * "${@}" || die * * If you need support, post the output of `emerge --info '=dev-python/mpi4py-1.3.1::gentoo'`, * the complete build log and the output of `emerge -pqv '=dev-python/mpi4py-1.3.1::gentoo'`. * The complete build log is located at '/var/log/portage/dev-python:mpi4py-1.3.1:20150705-232013.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/dev-python/mpi4py-1.3.1/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/dev-python/mpi4py-1.3.1/temp/environment'. * Working directory: '/var/tmp/portage/dev-python/mpi4py-1.3.1/work/mpi4py-1.3.1-python3_3' * S: '/var/tmp/portage/dev-python/mpi4py-1.3.1/work/mpi4py-1.3.1' ----------------------------------------------------------------- This is an stable amd64 chroot image (named amd64-stable_20150624-154436) at a hardened host acting as a tinderbox. Portage 2.2.18 (python 2.7.9-final-0, default/linux/amd64/13.0/desktop/kde, gcc-4.8.4, glibc-2.20-r2, 4.0.7-hardened x86_64) ================================================================= System uname: Linux-4.0.7-hardened-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2 KiB Mem: 16164692 total, 1655360 free KiB Swap: 0 total, 0 free Timestamp of repository gentoo: Sun, 05 Jul 2015 21:45:01 +0000 sh bash 4.3_p33-r2 ld GNU ld (Gentoo 2.24 p1.4) 2.24 distcc 3.1 x86_64-pc-linux-gnu [disabled] ccache version 3.1.9 [disabled] app-shells/bash: 4.3_p33-r2::gentoo dev-java/java-config: 2.2.0::gentoo dev-lang/perl: 5.20.2::gentoo dev-lang/python: 2.7.9-r1::gentoo, 3.3.5-r1::gentoo dev-util/ccache: 3.1.9-r4::gentoo dev-util/cmake: 3.2.2::gentoo dev-util/pkgconfig: 0.28-r2::gentoo sys-apps/baselayout: 2.2::gentoo sys-apps/openrc: 0.17::gentoo sys-apps/sandbox: 2.6-r1::gentoo sys-devel/autoconf: 2.13::gentoo, 2.69::gentoo sys-devel/automake: 1.9.6-r4::gentoo, 1.10.3-r1::gentoo, 1.11.6-r1::gentoo, 1.12.6::gentoo, 1.13.4::gentoo, 1.14.1::gentoo sys-devel/binutils: 2.24-r3::gentoo sys-devel/gcc: 4.8.4::gentoo sys-devel/gcc-config: 1.7.3::gentoo sys-devel/libtool: 2.4.6::gentoo sys-devel/make: 4.1-r1::gentoo sys-kernel/linux-headers: 3.18::gentoo (virtual/os-headers) sys-libs/glibc: 2.20-r2::gentoo Repositories: local location: /usr/local/portage masters: gentoo gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: 9999 ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /etc/stunnel/stunnel.conf /opt/openfire/resources/security/ /usr/share/config /usr/share/easy-rsa /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.0/conf /usr/share/themes/oxygen-gtk/gtk-2.0 /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/games/angband/edit/ /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.5/ext-active/ /etc/php/apache2-php5.6/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/var/tmp/distfiles" EMERGE_DEFAULT_OPTS="--nospinner --tree --quiet-build" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j1" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" USE="X a52 aac acl acpi aes-ni alsa amd64 apache2 avx avx2 berkdb bluetooth branding btrfs bzip2 cairo cdda cdr cli consolekit corefonts cracklib crypt cups cxx dbus declarative designer dnssec dot dri drmkms dts dvd dvdr ecc emboss encode exif extraengine fam ffmpeg firefox flac fontconfig fortran fpm gd gdbm gif glamor gpm gudev gui iconv icu isag jadetex jpeg kde kipi kvm lapack lcms libkms libnotify libvirtd logrotate mad mbox minizip mmx mmxext mng modules mp3 mp4 mpeg multilib mysql ncurses nls nptl ogg opengl openmp openssl pam pango pax_kernel pcre pcre16 pdf phonon plasma png policykit ppds pwquality python qemu qt3support qt4 readline scrpyt sdl session spell spice sqlite sse sse2 sse4 sse4_1 sse4_2 ssh-askpass ssl ssse3 startup-notification svg tcl tcpd theora thinkpad threads tiff tk tls truetype udev udisks uml unicode upower usb usbredir uxa v4l v4l2 video vorbis wxwidgets x264 xa xcb xcomposite xinerama xkb xml xmp xscreensaver xslt xv xvfb xvid xvmc zenmap zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en en_GB" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Created attachment 406228 [details] package history
~/cvsPortage/gentoo-x86/dev-python/mpi4py $ ebuild mpi4py-1.3.1.ebuild clean install >>> Completed installing mpi4py-1.3.1 into /mnt/gen2/TmpDir/portage/dev-python/mpi4py-1.3.1/image/ ~/cvsPortage/gentoo-x86/dev-python/mpi4py $ grep src/mpi4py.MPI.c /mnt/gen2/TmpDir/portage/dev-python/mpi4py-1.3.1/temp/build.log src/mpi4py.MPI.c: In function ‘PyInit_MPI’: src/mpi4py.MPI.c:107349:3: warning: ‘ompi_mpi_ub’ is deprecated (declared at /usr/include/mpi.h:910): MPI_UB is deprecated in MPI-2.0 [-Wdeprecated-declarations] src/mpi4py.MPI.c:107364:3: warning: ‘ompi_mpi_lb’ is deprecated (declared at /usr/include/mpi.h:909): MPI_LB is deprecated in MPI-2.0 [-Wdeprecated-declarations] src/mpi4py.MPI.c: In function ‘PyInit_MPI’: src/mpi4py.MPI.c:107349:3: warning: ‘ompi_mpi_ub’ is deprecated (declared at /usr/include/mpi.h:910): MPI_UB is deprecated in MPI-2.0 [-Wdeprecated-declarations] src/mpi4py.MPI.c:107364:3: warning: ‘ompi_mpi_lb’ is deprecated (declared at /usr/include/mpi.h:909): MPI_LB is deprecated in MPI-2.0 [-Wdeprecated-declarations] src/mpi4py.MPI.c: In function ‘initMPI’: src/mpi4py.MPI.c:107349:3: warning: ‘ompi_mpi_ub’ is deprecated (declared at /usr/include/mpi.h:910): MPI_UB is deprecated in MPI-2.0 [-Wdeprecated-declarations] src/mpi4py.MPI.c:107364:3: warning: ‘ompi_mpi_lb’ is deprecated (declared at /usr/include/mpi.h:909): MPI_LB is deprecated in MPI-2.0 [-Wdeprecated-declarations] No error: Your CFLAG settings don't appear to be aggressive. Odd. Possibly a version sensitivity.
(In reply to Ian Delaney from comment #2) > No error: Your CFLAG settings don't appear to be aggressive. Well, I never turned on aggressive CFLAGS, it isn't worth at all IMO. > Odd. Possibly aversion sensitivity. This image was used to test perl-5.22, maybe a side effect.
Either way it needs replicating
(In reply to Ian Delaney from comment #4) > Either way it needs replicating I can replicate this here.
commit 2f801b0ec4408c88e6e1d6460879bce097eb9acb Author: Justin Lecher <jlec@gentoo.org> Date: Mon Oct 19 18:28:55 2015 +0200 dev-python/mpi4py: Version Bump fixes Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=554058 Package-Manager: portage-2.2.23 Signed-off-by: Justin Lecher <jlec@gentoo.org> https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=2f801b0ec4408c88e6e1d6460879bce097eb9acb
