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Bug 549792 - app-crypt/heimdal-1.5.3-r2 fails to build with libheimbase.so: error: undefined reference to 'pthread_key_create'
Summary: app-crypt/heimdal-1.5.3-r2 fails to build with libheimbase.so: error: undefin...
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Kerberos Maintainers
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2015-05-18 07:18 UTC by Justin Lecher (RETIRED)
Modified: 2016-07-20 17:03 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (heimdal-1.5.3-r2:20150518-065951.log,585.29 KB, text/x-log)
2015-05-18 07:20 UTC, Justin Lecher (RETIRED)
Details

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Description Justin Lecher (RETIRED) gentoo-dev 2015-05-18 07:18:20 UTC
en/libroken.la -lcrypt  -lresolv  
libtool: link: x86_64-pc-linux-gnu-gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wbad-function-cast -Wmissing-declarations -Wnested-externs -O2 -pipe -ftracer -march=native -frecord-gcc-switches -g -fdiagnostics-color=always -Wimplicit-function-declaration -Wformat-security -fno-strict-aliasing -Wl,-O1 -Wl,--as-needed -Wl,-O1 -Wl,--hash-style=gnu -Wl,--sort-common -o .libs/tc tc.o  ./.libs/libheim-ipcc.a /var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3-abi_x86_64.amd64/base/.libs/libheimbase.so /var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3-abi_x86_64.amd64/lib/roken/.libs/libroken.so ../../lib/vers/.libs/libvers.a ../../lib/roken/.libs/libroken.so -lcrypt -lresolv
/var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3-abi_x86_64.amd64/base/.libs/libheimbase.so: error: undefined reference to 'pthread_key_create'
/var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3-abi_x86_64.amd64/base/.libs/libheimbase.so: error: undefined reference to 'pthread_getspecific'
/var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3-abi_x86_64.amd64/base/.libs/libheimbase.so: error: undefined reference to 'pthread_setspecific'
collect2: error: ld returned 1 exit status
Makefile:799: recipe for target 'tc' failed
make[2]: *** [tc] Error 1
make[2]: Leaving directory '/var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3-abi_x86_64.amd64/lib/ipc'
Makefile:557: recipe for target 'all-recursive' failed
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory '/var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3-abi_x86_64.amd64/lib'
Makefile:599: recipe for target 'all-recursive' failed
make: *** [all-recursive] Error 1
 * ERROR: app-crypt/heimdal-1.5.3-r2::gentoo failed (compile phase):
  *   emake failed
  


$ einfo =app-crypt/heimdal-1.5.3-r2
Portage 2.2.18 (python 3.4.3-final-0, default/linux/amd64/13.0, gcc-4.9.2-asneeded, glibc-2.20-r2, 4.0.2-lh x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-4.0.2-lh-x86_64-Intel-R-_Core-TM-_i7-2600_CPU_@_3.40GHz-with-gentoo-2.2
KiB Mem:    16399524 total,    993756 free
KiB Swap:    8388600 total,   8388600 free
Timestamp of repository gentoo: Mon, 18 May 2015 05:45:01 +0000
sh bash 4.3_p33-r2
ld GNU gold (Gentoo 2.25 p1.0 2.25) 1.11
ccache version 3.2.2 [enabled]
app-shells/bash:          4.3_p33-r2::gentoo
dev-java/java-config:     2.2.0::gentoo
dev-lang/perl:            5.20.2-r1::gentoo
dev-lang/python:          2.7.9-r2::gentoo, 3.3.5-r1::gentoo, 3.4.3::gentoo
dev-util/ccache:          3.2.2::gentoo
dev-util/cmake:           3.2.2::gentoo
dev-util/pkgconfig:       0.28-r2::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/openrc:          0.16::gentoo
sys-apps/sandbox:         2.6-r1::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r1::gentoo
sys-devel/automake:       1.11.6-r1::gentoo, 1.12.6::gentoo, 1.13.4::gentoo, 1.14.1::gentoo, 1.15::gentoo
sys-devel/binutils:       2.25::gentoo
sys-devel/gcc:            4.1.2::gentoo, 4.9.2::gentoo
sys-devel/gcc-config:     1.8::gentoo
sys-devel/libtool:        2.4.6-r1::gentoo
sys-devel/make:           4.1-r1::gentoo
sys-kernel/linux-headers: 4.0::gentoo (virtual/os-headers)
sys-libs/glibc:           2.20-r2::gentoo
Repositories:

gentoo
    location: /var/db/gentoo
    sync-type: git
    sync-uri: https://github.com/gentoo/gentoo-portage-rsync-mirror.git
    priority: -1000

betagarden
    location: /local/src/repos/betagarden
    sync-type: git
    sync-uri: https://anongit.gentoo.org/git/proj/betagarden.git
    masters: gentoo
    priority: 50

dummy
    location: /local/src/repos/dummy
    masters: gentoo
    priority: 50

last-hope
    location: /local/src/repos/last-hope
    sync-type: git
    sync-uri: git://github.com/ercpe/lh-overlay.git
    masters: gentoo
    priority: 50

science
    location: /local/src/repos/science
    sync-type: git
    sync-uri: git://github.com/gentoo-science/sci.git
    masters: gentoo
    priority: 50

gentoo-cvs
    location: /local/home/justin/tree
    masters: gentoo
    priority: 1000

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -ftracer   -march=native -frecord-gcc-switches -g -fdiagnostics-color=always -Wimplicit-function-declaration -Wformat-security"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/gnupg/qualified.txt /var/lib/hsqldb /var/spool/munin-async/.ssh /var/spool/torque"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -pipe -ftracer   -march=native -frecord-gcc-switches -g -fdiagnostics-color=always -Wenum-compare -Wformat-security"
DISTDIR="/var/cache/distfiles"
EMERGE_DEFAULT_OPTS=" -vt --keep-going --autounmask-write --autounmask --quiet-build=n --autounmask-unrestricted-atoms=y"
FCFLAGS="-O2 -pipe -ftracer   -march=native -frecord-gcc-switches -g -fdiagnostics-color=always"
FEATURES="assume-digests binpkg-logs buildsyspkg ccache cgroup collision-protect compressdebug distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news noinfo parallel-fetch parallel-install preserve-libs protect-owned sandbox sfperms sign split-log splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe -ftracer   -march=native -frecord-gcc-switches -g -fdiagnostics-color=always"
GENTOO_MIRRORS=" 	/mnt/tmpfs/ 	http://gentoo.j-schmitz.net/mirror/ 	ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo 	ftp://ftp.tu-clausthal.de/pub/linux/gentoo/"
LANG="en_GB.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,-O1 -Wl,--hash-style=gnu -Wl,--sort-common"
MAKEOPTS="-j12 -l8"
PKGDIR="/var/cache/packages"
PORTAGE_COMPRESS="xz"
PORTAGE_COMPRESS_FLAGS="-z -e -9 -v --threads=4"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_EXTRA_OPTS="--omit-dir-times"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
USE="X acl alsa amd64 avx bash-completion berkdb branding bzip2 cairo caps cli cracklib crypt cups cxx dbus dri fortran gdbm gif gmp gstreamer gtk gtk3 iconv icu ipv6 jpeg jpeg2k ldap logrotate mmx mmxext modules multilib ncurses network-cron nls nptl nsplugin numa opengl openmp pam pcre pgo png pulseaudio qt3support readline session smp sse sse2 sse2_4way sse2check sse3 sse4 sse41 sse4_1 sse4_2 sse4a sse5 ssl ssse3 startup-notification tcpd threads tiff truetype unicode vaapi vdpau xattr xinerama zlib" ABI_X86="64" ALSA_CARDS="hda-intel" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" DRACUT_MODULES="plymouth" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="efi-32 efi-64" INPUT_DEVICES="evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer pdfimport scripting-javascript wiki-publisher nlpsolver" LINGUAS="en en_GB en_US" NGINX_MODULES_HTTP="access auth_basic autoindex browser charset empty_gif fastcgi geo gzip limit_conn limit_req map memcached proxy referer rewrite scgi split_clients ssi upstream_ip_hash userid uwsgi stub_status" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3 python3_4 pypy" QEMU_SOFTMMU_TARGETS="i386 x86_64 arm armeb" QEMU_USER_TARGETS="i386 x86_64 arm armeb" RUBY_TARGETS="ruby20" USERLAND="GNU" VIDEO_CARDS="nvidia" XFCE_PLUGINS="clock trash power" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
USE_PYTHON="2.7 3.3"
Unset:  CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND
Comment 1 Justin Lecher (RETIRED) gentoo-dev 2015-05-18 07:20:22 UTC
Created attachment 403522 [details]
build.log
Comment 2 Patrick Lauer gentoo-dev 2015-06-28 01:48:09 UTC
Same failure mode, different place:

>>> Test phase: app-crypt/heimdal-1.5.3-r2
 * abi_x86_64.amd64: running multilib-minimal_abi_src_test
make -j3 check 
Making check in include
make[1]: Entering directory '/var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3-abi_x86_64.amd64/include'
Making check in kadm5
make[2]: Entering directory '/var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3-abi_x86_64.amd64/include/kadm5'
make  check-local
make[3]: Entering directory '/var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3-abi_x86_64.amd64/include/kadm5'
make[3]: Leaving directory '/var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3-abi_x86_64.amd64/include/kadm5'
make[2]: Leaving directory '/var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3-abi_x86_64.amd64/include/kadm5'
Making check in hcrypto
make[2]: Entering directory '/var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3-abi_x86_64.amd64/include/hcrypto'
make  check-local
make[3]: Entering directory '/var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3-abi_x86_64.amd64/include/hcrypto'
make[3]: Leaving directory '/var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3-abi_x86_64.amd64/include/hcrypto'
make[2]: Leaving directory '/var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3-abi_x86_64.amd64/include/hcrypto'
Making check in gssapi
make[2]: Entering directory '/var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3-abi_x86_64.amd64/include/gssapi'
make  check-local
make[3]: Entering directory '/var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3-abi_x86_64.amd64/include/gssapi'
make[3]: Leaving directory '/var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3-abi_x86_64.amd64/include/gssapi'
make[2]: Leaving directory '/var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3-abi_x86_64.amd64/include/gssapi'
make[2]: Entering directory '/var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3-abi_x86_64.amd64/include'
make  check-local
make[3]: Entering directory '/var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3-abi_x86_64.amd64/include'
make[3]: Leaving directory '/var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3-abi_x86_64.amd64/include'
make[2]: Leaving directory '/var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3-abi_x86_64.amd64/include'
make[1]: Leaving directory '/var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3-abi_x86_64.amd64/include'
Making check in base
make[1]: Entering directory '/var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3-abi_x86_64.amd64/base'
make  test_base
make[2]: Entering directory '/var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3-abi_x86_64.amd64/base'
x86_64-pc-linux-gnu-gcc  -DHAVE_CONFIG_H -I. -I/var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3/base -I../include -I/var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3/include  -I../lib/roken -I/var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3/lib/roken -I/usr/include/et  -D_LARGE_FILES= -Wall -Wmissing-prototypes -Wpointer-arith -Wbad-function-cast -Wmissing-declarations -Wnested-externs  -O2 -pipe -fno-strict-aliasing -c -o test_base.o /var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3/base/test_base.c
/bin/sh ../libtool  --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -Wall -Wmissing-prototypes -Wpointer-arith -Wbad-function-cast -Wmissing-declarations -Wnested-externs  -O2 -pipe -fno-strict-aliasing  -Wl,-O1 -Wl,--as-needed -o test_base test_base.o ../base/libheimbase.la -lresolv  
libtool: link: x86_64-pc-linux-gnu-gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wbad-function-cast -Wmissing-declarations -Wnested-externs -O2 -pipe -fno-strict-aliasing -Wl,-O1 -Wl,--as-needed -o .libs/test_base test_base.o  ../base/.libs/libheimbase.so -lresolv
../base/.libs/libheimbase.so: undefined reference to `pthread_getspecific'
../base/.libs/libheimbase.so: undefined reference to `pthread_key_create'
../base/.libs/libheimbase.so: undefined reference to `pthread_setspecific'
collect2: error: ld returned 1 exit status
Makefile:608: recipe for target 'test_base' failed
make[2]: *** [test_base] Error 1
make[2]: Leaving directory '/var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3-abi_x86_64.amd64/base'
Makefile:760: recipe for target 'check-am' failed
make[1]: *** [check-am] Error 2
make[1]: Leaving directory '/var/tmp/portage/app-crypt/heimdal-1.5.3-r2/work/heimdal-1.5.3-abi_x86_64.amd64/base'
Makefile:599: recipe for target 'check-recursive' failed
make: *** [check-recursive] Error 1
 * ERROR: app-crypt/heimdal-1.5.3-r2::gentoo failed (test phase):
 *   emake failed
Comment 3 Steve Arnold archtester gentoo-dev 2016-03-08 03:36:28 UTC
Works if you add -lpthread (such a silly upstream fail).

But then it fails again on amd64 multilib without an extra -L/$(get_libdir) -L/usr/$(get_libdir). It doesn't quite look in the right places for linking either.