Created attachment 402918 [details] emerge log ! LaTeX Error: File `ifxetex.sty' not found. Type X to quit or <RETURN> to proceed, or enter new name. (Default extension: sty) Enter file name: ! Emergency stop. <read *> l.92 \def \PLS@temp{dvipdfm}^^M ! ==> Fatal error occurred, no output PDF file produced! Transcript written on gromacs.log. ninja: build stopped: subcommand failed. * ERROR: sci-chemistry/gromacs-5.0.4-r1::gentoo failed (compile phase): * (no error message) * * Call stack: * ebuild.sh, line 93: Called src_compile * environment, line 3109: Called cmake-utils_src_compile 'manual' * environment, line 845: Called _execute_optionally 'src_compile' 'manual' * environment, line 401: Called enable_cmake-utils_src_compile 'manual' * environment, line 1120: Called cmake-utils_src_make 'manual' * environment, line 860: Called ninja_src_make 'manual' * environment, line 2691: Called die * The specific snippet of code: * "$@" || die * * If you need support, post the output of `emerge --info '=sci-chemistry/gromacs-5.0.4-r1::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-chemistry/gromacs-5.0.4-r1::gentoo'`. * The complete build log is located at '/var/log/portage/sci-chemistry:gromacs-5.0.4-r1:20150509-170929.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/gromacs-5.0.4-r1/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/gromacs-5.0.4-r1/temp/environment'. * Working directory: '/var/tmp/portage/sci-chemistry/gromacs-5.0.4-r1/work/gromacs-5.0.4_float' * S: '/var/tmp/portage/sci-chemistry/gromacs-5.0.4-r1/work/gromacs-5.0.4' The log is stored in /var/log/portage/_emerge_20150509-192045.log quick search: https://bugs.gentoo.org/buglist.cgi?quicksearch=sci-chemistry%2Fgromacs Maintainer : ottxor@gentoo.org sci-chemistry@gentoo.org maintainer : ottxor@gentoo.org herd : sci-chemistry This is an unstable amd64 chroot image (named amd64-hardened-unstable_20150501-134338) at a hardened host acting as a tinderbox. Portage 2.2.18 (python 2.7.9-final-0, hardened/linux/amd64, gcc-4.9.2, glibc-2.20-r2, 3.19.6-hardened-r2 x86_64) ================================================================= System uname: Linux-3.19.6-hardened-r2-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2 KiB Mem: 16164756 total, 1115996 free KiB Swap: 0 total, 0 free Timestamp of repository gentoo: Sat, 09 May 2015 13:15:01 +0000 sh bash 4.3_p33-r2 ld GNU ld (Gentoo 2.25 p1.1) 2.25 ccache version 3.2.1 [disabled] app-shells/bash: 4.3_p33-r2::gentoo dev-java/java-config: 2.2.0::gentoo dev-lang/perl: 5.20.2::gentoo dev-lang/python: 2.7.9-r2::gentoo, 3.3.5-r1::gentoo dev-util/ccache: 3.2.1-r1::gentoo dev-util/cmake: 3.2.1::gentoo dev-util/pkgconfig: 0.28-r2::gentoo sys-apps/baselayout: 2.2::gentoo sys-apps/openrc: 0.15.1::gentoo sys-apps/sandbox: 2.6-r1::gentoo sys-devel/autoconf: 2.13::gentoo, 2.69-r1::gentoo sys-devel/automake: 1.9.6-r4::gentoo, 1.11.6-r1::gentoo, 1.12.6::gentoo, 1.13.4::gentoo, 1.14.1::gentoo, 1.15::gentoo sys-devel/binutils: 2.25::gentoo sys-devel/gcc: 4.8.4::gentoo, 4.9.2::gentoo sys-devel/gcc-config: 1.8::gentoo sys-devel/libtool: 2.4.6-r1::gentoo sys-devel/make: 4.1-r1::gentoo sys-kernel/linux-headers: 4.0::gentoo (virtual/os-headers) sys-libs/glibc: 2.20-r2::gentoo Repositories: local location: /usr/local/portage masters: gentoo gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: 9999 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /etc/entropy /etc/stunnel/stunnel.conf /usr/share/config /usr/share/gnupg/qualified.txt /var/lib/hsqldb /var/rancid/.cloginrc" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.5/ext-active/ /etc/php/apache2-php5.6/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/var/tmp/distfiles" EMERGE_DEFAULT_OPTS="--nospinner --tree --quiet-build" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j1" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" USE="X acl aes-ni alsa amd64 apache2 avx avx2 berkdb bzip2 cairo cli corefonts cracklib crypt cups cxx dbus designer dnssec dot dri drmkms dvd ecc extraengine ffmpeg fontconfig fortran fpm gd gdbm gif gtk gudev gui hardened iconv icu isag jadetex jpeg justify kvm lapack libkms libvirtd logrotate mbox minizip mmx mmxext modules multilib mysql ncurses nls nptl ogg opengl openmp openssl pam pax_kernel pcre pcre16 plasma png policykit pwquality python qemu qt3support readline scrpyt sdl session spice sqlite sse sse2 sse4 sse4_1 sse4_2 ssh-askpass ssl ssse3 svg tcpd theora thinkpad threads tk tls truetype uml unicode urandom usb usbredir uxa v4l v4l2 video vorbis xa xattr xkb xmp xscreensaver xslt xtpax xvfb xvmc zenmap zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSI ONS="presenter-console presenter-minimizer" LINGUAS="en en_GB" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Isn't ifxetex.sty part of dev-texlive/texlive-basic?
(In reply to Christoph Junghans from comment #1) > Isn't ifxetex.sty part of dev-texlive/texlive-basic? tor-relay / # eix dev-texlive/texlive-basic [I] dev-texlive/texlive-basic Available versions: 2012 (~)2013 (~)2014 {doc source} Installed versions: 2014(07:18:43 AM 05/10/2015)(-doc -source) Homepage: http://www.tug.org/texlive/ Description: TeXLive Essential programs and files
$ equery b ifxetex.sty * Searching for ifxetex.sty ... dev-texlive/texlive-basic-2012 (/usr/share/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
Created attachment 406032 [details] emerge log w/ sandbox issue BTW today at another chroot image I do get a sandbox issue too
Created attachment 406034 [details] sandbox log
I cannot reproduce this! Do you have ifxetex.sty? @alexxy: can you reproduce this?
(In reply to Christoph Junghans from comment #6) > I cannot reproduce this! Do you have ifxetex.sty? $ sudo chroot amd64-hardened-unstable_20150602-150611 /bin/bash tor-relay / # equery b ifxetex.sty * Searching for ifxetex.sty ... FWIW this is a unstable tinderbox image with an experimental mysql git repo - but that shouldn't harm this package, or ?
(In reply to Toralf Förster from comment #7) > (In reply to Christoph Junghans from comment #6) > > I cannot reproduce this! Do you have ifxetex.sty? > > $ sudo chroot amd64-hardened-unstable_20150602-150611 /bin/bash > tor-relay / # equery b ifxetex.sty > * Searching for ifxetex.sty ... Just install all dev-texlive/texlive-* for a sec to figure out, which one contains ifxetex.sty and we can update the dependencies.
$ equery b ifxetex.sty * Searching for ifxetex.sty ... dev-texlive/texlive-basic-2014 (/usr/share/texmf-dist/tex/generic/ifxetex/ifxetex.sty) I guess something must be wrong with your tex installation as it works with texlive-basic-2014 for me.
similar at another chroot image : (/usr/share/texmf-dist/tex/latex/enumitem/enumitem.sty) (/usr/share/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texmf-dist/tex/latex/oberdiek/pdflscape.sty (/usr/share/texmf-dist/tex/latex/graphics/lscape.sty (/usr/share/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texmf-dist/tex/latex/latexconfig/graphics.cfg) (/usr/share/texmf-dist/tex/latex/pdftex-def/pdftex.def (/usr/share/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)))) (/usr/share/texmf-dist/tex/generic/oberdiek/ifpdf.sty) ! LaTeX Error: File `ifxetex.sty' not found. Type X to quit or <RETURN> to proceed, or enter new name. (Default extension: sty) Enter file name: ! Emergency stop. <read *> l.92 \def \PLS@temp{dvipdfm}^^M ! ==> Fatal error occurred, no output PDF file produced! Transcript written on gromacs.log. ninja: build stopped: subcommand failed. * ERROR: sci-chemistry/gromacs-5.0.6::gentoo failed (compile phase): * (no error message) * * Call stack: * ebuild.sh, line 93: Called src_compile * environment, line 3114: Called cmake-utils_src_compile 'manual' * environment, line 848: Called _execute_optionally 'src_compile' 'manual' * environment, line 404: Called enable_cmake-utils_src_compile 'manual' * environment, line 1123: Called cmake-utils_src_make 'manual' * environment, line 863: Called ninja_src_make 'manual' * environment, line 2696: Called die * The specific snippet of code: * "$@" || die * * If you need support, post the output of `emerge --info '=sci-chemistry/gromacs-5.0.6::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-chemistry/gromacs-5.0.6::gentoo'`. * The complete build log is located at '/var/log/portage/sci-chemistry:gromacs-5.0.6:20150807-084910.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/gromacs-5.0.6/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/gromacs-5.0.6/temp/environment'. * Working directory: '/var/tmp/portage/sci-chemistry/gromacs-5.0.6/work/gromacs-5.0.6_float' * S: '/var/tmp/portage/sci-chemistry/gromacs-5.0.6/work/gromacs-5.0.6' (null)*(null) --------------------------- ACCESS VIOLATION SUMMARY --------------------------- (null)*(null) LOG FILE: "/var/log/sandbox/sandbox-28425.log" (null)*(null) VERSION 1.0 FORMAT: F - Function called FORMAT: S - Access Status FORMAT: P - Path as passed to function FORMAT: A - Absolute Path (not canonical) FORMAT: R - Canonical Path FORMAT: C - Command Line F: mkdir S: deny P: ././var/cache/fonts/tfm A: /var/cache/fonts/tfm R: /var/cache/fonts/tfm C: mkdir ././var/cache/fonts/tfm (null)*(null) -------------------------------------------------------------------------------- ----------------------------------------------------------------- This is an unstable amd64 chroot image (named amd64-gnome-unstable_20150731-133239) at a hardened host acting as a tinderbox. Portage 2.2.20 (python 3.4.3-final-0, default/linux/amd64/13.0/desktop/gnome, gcc-4.9.3, glibc-2.21-r1, 4.0.8-hardened x86_64) ================================================================= System uname: Linux-4.0.8-hardened-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2 KiB Mem: 16164692 total, 970196 free KiB Swap: 0 total, 0 free Timestamp of repository gentoo: Fri, 07 Aug 2015 05:45:01 +0000 sh bash 4.3_p39 ld GNU ld (Gentoo 2.25.1 p1.0) 2.25.1 ccache version 3.2.2 [disabled] app-shells/bash: 4.3_p39::gentoo dev-java/java-config: 2.2.0::gentoo dev-lang/perl: 5.22.0::gentoo dev-lang/python: 2.7.10::gentoo, 3.4.3::gentoo dev-util/ccache: 3.2.2::gentoo dev-util/cmake: 3.3.0::gentoo dev-util/pkgconfig: 0.28-r3::gentoo sys-apps/baselayout: 2.2::gentoo sys-apps/openrc: 0.17::gentoo sys-apps/sandbox: 2.6-r1::gentoo sys-devel/autoconf: 2.13::gentoo, 2.69-r1::gentoo sys-devel/automake: 1.9.6-r4::gentoo, 1.10.3-r1::gentoo, 1.11.6-r1::gentoo, 1.12.6::gentoo, 1.13.4::gentoo, 1.14.1::gentoo, 1.15::gentoo sys-devel/binutils: 2.25.1::gentoo sys-devel/gcc: 4.2.4-r1::gentoo, 4.8.4::gentoo, 4.9.3::gentoo sys-devel/gcc-config: 1.8::gentoo sys-devel/libtool: 2.4.6-r1::gentoo sys-devel/make: 4.1-r1::gentoo sys-kernel/linux-headers: 4.1::gentoo (virtual/os-headers) sys-libs/glibc: 2.21-r1::gentoo Repositories: local location: /usr/local/portage masters: gentoo gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: 9999 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /etc/entropy /etc/stunnel/stunnel.conf /usr/lib64/fax /usr/share/config /usr/share/easy-rsa /usr/share/gnupg/qualified.txt /var/lib/hsqldb /var/lib/i2pd/certificates /var/spool/fax/etc" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/games/angband/edit/ /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -pipe" DISTDIR="/var/tmp/distfiles" EMERGE_DEFAULT_OPTS="--nospinner --tree --quiet-build --accept-properties=-interactive --accept-restrict=-fetch" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j1" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" USE="X a52 aac acl acpi aes-ni alsa amd64 berkdb bluetooth branding bzip2 cairo cdda cdr cli colord consolekit cracklib crypt cups curl custom-optimization cxx dbus designer dot dri dts dvd dvdr ecc eds elp emboss encode evo exif fam firefox flac fontconfig fortran gdbm gif git glamor gnome gnome-keyring gnome-online-accounts gpm gstreamer gtk gtk3 gudev h hpn iconv inifile introspection ipv6 isag jadetex javaxml jpeg lapack lcms ldap libnotify libsecret libvirtd logrotate mad minizip mmx mmxext mng modules mp3 mp4 mpeg multilib mysql mysqli nautilus ncurses nls nptl nss odbc opencv opengl openmp openssl pam pango pcre pcre16 pdf pdo png policykit ppds pulseaudio qt3support qt4 qt5 readline scrpyt scrypt sdl semantic-desktop session spell sse sse2 sse4 sse4_1 sse4_2 ssl ssse3 startup-notification svg system-icu system-jpeg system-sqlite tcpd theora threads tiff tls tracker truetype udev udisks uml unicode upower usb usbredir uxa v4l vorbis widgets wxwidgets x264 xa xcb xkb xml xslt xv xvfb xvid xvmc xz zenmap zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmin txt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en en_GB" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
*** Bug 558724 has been marked as a duplicate of this bug. ***
