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Bug 546896 - [sage-on-gentoo overlay] sage-doc-6.6 - No such file or directory: '/var/tmp/portage/sci-mathematics/sage-doc-6.6/temp/matplotlib-portage/fontList.cache'
Summary: [sage-on-gentoo overlay] sage-doc-6.6 - No such file or directory: '/var/tmp/...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: François Bissey
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2015-04-17 09:59 UTC by Juergen Rose
Modified: 2016-05-14 10:46 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,5.19 KB, text/plain)
2015-04-17 10:01 UTC, Juergen Rose
Details

Note You need to log in before you can comment on or make changes to this bug.
Description Juergen Rose 2015-04-17 09:59:59 UTC
'emerge sage-doc' fails with:
...

>>> Emerging (8 of 11) sci-mathematics/sage-doc-6.6::sage-on-gentoo
 * sage-6.6.tar.gz SHA256 SHA512 size ;-) ...                                                                                                                                [ ok ]
 * Singular-3-1-6-share.tar.gz SHA256 SHA512 size ;-) ...                                                                                                                    [ ok ]
>>> Unpacking source...
>>> Unpacking sage-6.6.tar.gz to /var/tmp/portage/sci-mathematics/sage-doc-6.6/work
>>> Unpacking Singular-3-1-6-share.tar.gz to /var/tmp/portage/sci-mathematics/sage-doc-6.6/work
>>> Source unpacked in /var/tmp/portage/sci-mathematics/sage-doc-6.6/work
>>> Preparing source in /var/tmp/portage/sci-mathematics/sage-doc-6.6/work/sage-6.6/src ...
 * Applying sage-doc-6.0-misc.patch ...                                                                                                                                      [ ok ]
 * Applying sage-doc-6.6-linguas.patch ...                                                                                                                                   [ ok ]
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-mathematics/sage-doc-6.6/work/sage-6.6/src ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-mathematics/sage-doc-6.6/work/sage-6.6/src ...
 * python2_7: running distutils-r1_run_phase python_compile
Setting permissions of DOT_SAGE directory so only you can read and write it.

Building reference manual, first pass.

[polynomia] Exception occurred:
[combinat ] Exception occurred:
[polynomia] File "/usr/lib64/python2.7/site-packages/matplotlib/font_manager.py", line 939, in pickle_dump
[polynomia] with open(filename, 'wb') as fh:
[polynomia] IOError: [Errno 2] No such file or directory: '/var/tmp/portage/sci-mathematics/sage-doc-6.6/temp/matplotlib-portage/fontList.cache'
[polynomia] The full traceback has been saved in /var/tmp/portage/sci-mathematics/sage-doc-6.6/temp/sphinx-err-XOFz8f.log, if you want to report the issue to the developers.
[polynomia] Please also report this if it was a user error, so that a better error message can be provided next time.
[polynomia] A bug report can be filed in the tracker at <https://bitbucket.org/birkenfeld/sphinx/issues/>. Thanks!
[combinat ] File "/usr/lib64/python2.7/site-packages/matplotlib/font_manager.py", line 939, in pickle_dump
[combinat ] with open(filename, 'wb') as fh:
[combinat ] IOError: [Errno 2] No such file or directory: '/var/tmp/portage/sci-mathematics/sage-doc-6.6/temp/matplotlib-portage/fontList.cache'
[combinat ] The full traceback has been saved in /var/tmp/portage/sci-mathematics/sage-doc-6.6/temp/sphinx-err-k7DkeF.log, if you want to report the issue to the developers.
[combinat ] Please also report this if it was a user error, so that a better error message can be provided next time.
[combinat ] A bug report can be filed in the tracker at <https://bitbucket.org/birkenfeld/sphinx/issues/>. Thanks!
Error building the documentation.
Traceback (most recent call last):
  File "doc/common/builder.py", line 1626, in <module>
    getattr(get_builder(name), type)()
  File "doc/common/builder.py", line 292, in _wrapper
    getattr(get_builder(document), 'inventory')(*args, **kwds)
  File "doc/common/builder.py", line 503, in _wrapper
    x.get(99999)
  File "/usr/lib64/python2.7/multiprocessing/pool.py", line 558, in get
    raise self._value
OSError: [polynomia] Exception occurred:

 * ERROR: sci-mathematics/sage-doc-6.6::sage-on-gentoo failed (compile phase):
 


root@gepard:/root(7)# emerge --info '=sci-mathematics/sage-doc-6.6::sage-on-gentoo'
Portage 2.2.18 (python 2.7.9-final-0, default/linux/amd64/13.0/desktop/gnome/systemd, gcc-4.9.2, glibc-2.20-r2, 4.0.0-gentoo x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-4.0.0-gentoo-x86_64-Intel-R-_Core-TM-_i7_CPU_M_620_@_2.67GHz-with-gentoo-2.2
KiB Mem:     8023148 total,   1586188 free
KiB Swap:   12582908 total,  12563624 free
Timestamp of repository gentoo: Fri, 17 Apr 2015 06:00:01 +0000
sh bash 4.3_p33-r2
ld GNU ld (Gentoo 2.25 p1.0) 2.25
distcc[861] (dcc_trace_version) distcc 3.2rc1 x86_64-pc-linux-gnu; built Feb 28 2015 11:22:32 [disabled]
app-shells/bash:          4.3_p33-r2::gentoo
dev-java/java-config:     2.2.0::gentoo
dev-lang/perl:            5.20.2::gentoo
dev-lang/python:          2.7.9-r2::gentoo, 3.3.5-r1::gentoo, 3.4.3::gentoo
dev-util/cmake:           3.2.1::gentoo
dev-util/pkgconfig:       0.28-r2::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/openrc:          0.13.11::gentoo
sys-apps/sandbox:         2.6-r1::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r1::gentoo
sys-devel/automake:       1.9.6-r4::gentoo, 1.10.3-r1::gentoo, 1.11.6-r1::gentoo, 1.12.6::gentoo, 1.14.1::gentoo, 1.15::gentoo
sys-devel/binutils:       2.25::gentoo
sys-devel/gcc:            4.9.2::gentoo
sys-devel/gcc-config:     1.8::gentoo
sys-devel/libtool:        2.4.6-r1::gentoo
sys-devel/make:           4.1-r1::gentoo
sys-kernel/linux-headers: 4.0::gentoo (virtual/os-headers)
sys-libs/glibc:           2.20-r2::gentoo
Repositories:

gentoo
    location: /usr/portage_gepard
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000

sage-on-gentoo
    location: /var/lib/layman/sage-on-gentoo
    masters: gentoo
    priority: 0

science
    location: /var/lib/layman/science
    masters: gentoo
    priority: 1

sunrise
    location: /var/lib/layman/sunrise
    masters: gentoo
    priority: 2

x11
    location: /var/lib/layman/x11
    masters: gentoo
    priority: 3

ago
    location: /var/lib/layman/ago
    masters: gentoo
    priority: 4

tlp
    location: /var/lib/layman/tlp
    masters: gentoo
    priority: 5

local
    location: /usr/local/portage
    masters: gentoo
    priority: 6

g-cpan
    location: /var/lib/cpan
    masters: gentoo
    priority: 7

g-octave
    location: /var/lib/g-octave
    masters: gentoo
    priority: 8

Installed sets: @system
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA PUEL Intel-SDP dlj-1.1 skype-eula skype-4.0.0.7-copyright googleearth AdobeFlash-11.x cadsoft Oracle-BCLA-JavaSE MakeMKV-EULA NVIDIA-CUDA Nero-AAC-EULA GIMPS"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=core2 -mtune=generic -Os -pipe -msse3 -msse4 -mcx16 -msahf -mpopcnt -mpreferred-stack-boundary=6"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.6/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=core2 -mtune=generic -Os -pipe -msse3 -msse4 -mcx16 -msahf -mpopcnt -mpreferred-stack-boundary=6"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-march=core2 -mtune=generic -Os -pipe -msse3 -msse4 -mcx16 -msahf -mpopcnt -mpreferred-stack-boundary=6"
GENTOO_MIRRORS="http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror http://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/ ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo ftp://ftp.tu-clausthal.de/pub/linux/gentoo ftp://ftp.easynet.nl/mirror/gentoo/ "
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j5"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
USE="64bit R X Xaw3d a52 aac acl acpi admin afs alsa amd64 ao apache2 apng applet archive armadillo arpack asf aspell assistant atlas audacious audiofile automap automount bash-completion berkdb blas blast bluetooth bluray boost branding bzip2 cairo cdda cddb cdf cdio cdparanoia cdr cg cgi chm cli cmake colord cracklib crypt css cups curl cxx daap db dbi dbm dbus declarative designer devhelp device-mapper dga dia dirac djvu doc dot dri ds2490 ds9097 ds9097u dts dv dvb dvd dvdr dvi dynamicplugin eds egl elf emacs emboss emf encode epiphany evo examples excel exif expat extensions extra extras faac faad fam ffmpeg fftw firefox fits flac fltk fontconfig foomaticdb fortran fortran95 fpm fpx fuse g3dvl garmin gcj gd gdal gdbm gdu gedit geoip geolocation geos gfortran gif gimp git glade glamor glib glpk gml gmp gnome gnome-keyring gnome-online-accounts gnome-print gnuplot gnutls gold gphoto2 gpm grammar graphics graphtft graphviz grass gsl gsm gstreamer gtk gtk3 gudev guile hdaps hddtemp hdf hdf5 hdri html http httpd hvm hwdb iconv icq icu id3tag ide imagemagick imap inotify introspection ipod ipv6 irda ithreads jabber jadetex java java6 jbig jit john jpeg jpeg2k kate kdepim kdrive kerberos keymap kpathsea kvm ladspa lame lapack laptop latex lcms ldap lensfun libffi libgda libkms libnotify libsamplerate libsecret lirc live lm_sensors lua lzma lzo mad mail maildir mapnik math matroska media-library mercurial mikmod mkl mmx mmxext mng mod modules mono motif mozilla mp3 mp4 mpeg mpi mpi-threads mplayer mtp multilib multimedia musepack musicbrainz mysql mysqli nautilus ncurses neXt netcdf netpbm network networking nfs nls nntp nptl nsplugin ntfs ntp numpy obex objc ocaml ocr octave odbc ofa ogdi ogg openexr opengl openmp openvg pam pango pcre pda pdf pdl2 perl plasma plotutils plugins png podcast policykit portaudio posix postgres postscript ppds preview-latex proj projectm pstricks pulseaudio python python-bindings q16 q32 qemu qhull qt3support qt4 qt5 quicktime raw readline reiserfs reports rle romio rpc rrdcgi rrdtool sage samba sasl schroedinger science sdk sdl secure-delete semantic-desktop server session shout sip slang slp smart smbclient smp sms sndfile snmp soap socialweb sockets sound soup sox speex spell sql sqlite sse sse2 sse3 sse4 sse4_1 sse4_2 ssl ssse3 startup-notification stlport subtitles subversion sudo suexec svg svm swig systemd szip t1lib tcl tcpd tex tex4ht texmacs theora thesaurus thinkpad threads thunderbird tidy tiff tk tools truetype udev udisks unicode upower usb utempter v4l v4l2 vaapi vala valgrind vdpau video virt-network virtualbox visio vorbis vpx vtk wav webdav webdav-serf webkit wifi wmf wxwidgets x264 xa xattr xcb xetex xext xft xine xml xmlreader xmlrpc xpm xv xvid xvmc yaml youtube zlib zvbi" ABI_X86="64" ALSA_CARDS="intel8x0" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_core authn_dbm authn_default authn_file authz_core authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info lbmethod_byrequests log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif slotmem_shm so socache_shmcb speling status unique_id unixd userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="canon fuji ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" CURL_SSL="nss" DRACUT_MODULES="caps lvm syslog" DVB_CARDS="usb-wt220u" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev synaptics void" KERNEL="linux" LCD_DEVICES="cfontz hd44780 mtxorb ncurses X lcd2usb lcdlinux png usblcd" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="de en fr ru" NETBEANS_MODULES="apisupport cnd dlight enterprise ergonomics groovy gsf harness ide identity j2ee java mobility nb php profiler websvccommon xml" OFFICE_IMPLEMENTATION="libreoffice" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" QEMU_SOFTMMU_TARGETS="arm i386 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="nouveau displaylink" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON



root@gepard:/root(8)# emerge -pqv '=sci-mathematics/sage-doc-6.6::sage-on-gentoo'
[ebuild  rR   ] media-gfx/freecad-0.14.3702-r1  PYTHON_TARGETS="python2_7" 
[ebuild     U ] sci-mathematics/sage-doc-6.6 [6.5] USE="html" LINGUAS="de%* en%* fr%* ru%* -ca% -hu% -it% -pt% -tr%" PYTHON_TARGETS="python2_7" 



Reproducible: Always
Comment 1 Juergen Rose 2015-04-17 10:01:31 UTC
Created attachment 401448 [details]
build.log
Comment 2 Juergen Rose 2015-04-17 10:03:42 UTC
Could it be, that there is any relation to installed sphinx version. I had some version up and down with sphinx:

 root@gepard:/root(12)# genlop -t sphinx | tail -n 30
     Sat Sep 20 18:04:53 2014 >>> dev-python/sphinx-1.2.2
       merge time: 1 minute and 30 seconds.

     Sat Oct 18 11:03:29 2014 >>> dev-python/sphinx-1.2.3
       merge time: 1 minute and 51 seconds.

     Wed Nov 26 04:03:38 2014 >>> dev-python/sphinx-1.2.3
       merge time: 1 minute and 39 seconds.

     Tue Dec  9 18:11:02 2014 >>> dev-python/sphinx-1.2.3
       merge time: 3 minutes and 12 seconds.

     Mon Feb 16 00:03:38 2015 >>> dev-python/sphinx-1.2.3
       merge time: 1 minute and 37 seconds.

     Sat Feb 21 18:04:33 2015 >>> dev-python/sphinx-1.2.3
       merge time: 1 minute and 31 seconds.

     Fri Mar 20 12:37:51 2015 >>> dev-python/sphinx-1.3
       merge time: 53 seconds.

     Fri Apr  3 12:59:59 2015 >>> dev-python/sphinx-1.3-r1
       merge time: 1 minute and 1 second.

     Fri Apr 10 01:23:13 2015 >>> dev-python/sphinx-1.3.1
       merge time: 59 seconds.

     Fri Apr 17 11:09:37 2015 >>> dev-python/sphinx-1.2.2
       merge time: 1 minute and 52 seconds.
Comment 3 François Bissey 2015-10-28 00:53:26 UTC
Don't think I was ever forwarded this. I'll have to talk to someone to get me copied instead of Christopher.

Is it still happening to you Juergen or has it gone away?
Comment 4 François Bissey 2015-10-28 00:59:36 UTC
Actually I think it is a duplicate of https://github.com/cschwan/sage-on-gentoo/issues/361 so it should be fixed.