I am not skilled with ebuild writing but for teh purpose of sci-biology/freebayes (in sci overlay) I need to checkout a whole project with linked other repositories: EGIT_REPO_URI="git://github.com/ekg/freebayes.git" EGIT_OPTIONS="--recursive --recurse-submodules" This does not give me a complete tree. If I try in my shell: git clone --recursive git://github.com/ekg/freebayes.git the above command gives me complete tree. Please see what am I doing wrong in the ebuild if you disagree.
Note that git-2 is deprecated in favour of git-r3.
Use git-r3.eclass instead