Hi, samtools version 1.2 is out. The sources are now on github. Could you please update the ebuild. see: http://www.htslib.org/download/ thanking you!
+*samtools-1.2 (18 Feb 2015) + + 18 Feb 2015; Justin Lecher <jlec@gentoo.org> + +files/samtools-1.2-buildsystem.patch, +samtools-1.2.ebuild: + Version Bump, #540356 +