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Bug 537626 - sci-electronics/klayout-0.22.9 - ld: /usr/lib64/libruby19-static.a(thread.o): undefined reference to symbol 'pthread_condattr_setclock@@GLIBC_2.3.3'
Summary: sci-electronics/klayout-0.22.9 - ld: /usr/lib64/libruby19-static.a(thread.o):...
Status: RESOLVED OBSOLETE
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Andreas K. Hüttel
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2015-01-25 08:56 UTC by Toralf Förster
Modified: 2016-12-13 20:52 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments

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Description Toralf Förster gentoo-dev 2015-01-25 08:56:24 UTC
if [ "xlayResources.qrc layLayoutStatistics.qrc layHelpResources.qrc layMacroTemplates.qrc layBuildInMacros.qrc libResources.qrc gtf.qrc  " != "x" ]; then /usr/bin/rcc -o resources.cc /var/tmp/portage/sci-electronics/klayout-0.22.9/work/ruby19/klayout-0.22.9/src/layResources.qrc /var/tmp/portage/sci-electronics/klayout-0.22.9/work/ruby19/klayout-0.22.9/src/layLayoutStatistics.qrc /var/tmp/portage/sci-electronics/klayout-0.22.9/work/ruby19/klayout-0.22.9/src/layHelpResources.qrc /var/tmp/portage/sci-electronics/klayout-0.22.9/work/ruby19/klayout-0.22.9/src/layMacroTemplates.qrc /var/tmp/portage/sci-electronics/klayout-0.22.9/work/ruby19/klayout-0.22.9/src/layBuildInMacros.qrc /var/tmp/portage/sci-electronics/klayout-0.22.9/work/ruby19/klayout-0.22.9/src/libResources.qrc /var/tmp/portage/sci-electronics/klayout-0.22.9/work/ruby19/klayout-0.22.9/src/gtf.qrc; else echo "" >resources.cc; fi
x86_64-pc-linux-gnu-g++ -I/var/tmp/portage/sci-electronics/klayout-0.22.9/work/ruby19/klayout-0.22.9/src -I/var/tmp/portage/sci-electronics/klayout-0.22.9/work/ruby19/klayout-0.22.9/src -I. -I/usr/include/qt4  -I/usr/include/ruby-1.9.1 -I/usr/include/ruby-1.9.1/x86_64-linux -Wall -pedantic -Wno-deprecated -Woverloaded-virtual -Wsign-promo -Wsynth -Wno-long-long -Wno-strict-aliasing -DQT_THREAD_SUPPORT -DQT3_SUPPORT -DHAVE_RUBY -c -O2 -pipe -o resources.o resources.cc
x86_64-pc-linux-gnu-g++ -Wl,-E -Wl,-O1 -Wl,--as-needed -o klayout layMain.o antConfig.o antObject.o antPlugin.o antService.o antTemplate.o dbArray.o dbBox.o dbBoxConvert.o dbCell.o dbCellGraphUtils.o dbCellInst.o dbCellMapping.o dbCIF.o dbCIFReader.o dbCIFWriter.o dbClipboard.o dbClipboardData.o dbClip.o dbDXF.o dbDXFReader.o dbDXFWriter.o dbEdge.o dbEdgeProcessor.o dbFuzzyCellMapping.o dbGDS2.o dbGDS2ReaderBase.o dbGDS2Reader.o dbGDS2WriterBase.o dbGDS2Writer.o dbHershey.o dbInstances.o dbInstElement.o dbLayerProperties.o dbLayout.o dbLayoutDiff.o dbLayoutQuery.o 


...
layMacroEditorTree_moc.o layMainConfigPages_moc.o layMainWindow_moc.o layMove_moc.o layNavigator_moc.o layOASISWriterPlugin_moc.o layProgressWidget_moc.o layPropertiesDialog_moc.o laySaveLayoutOptionsDialog_moc.o laySelectCellViewForm_moc.o laySelector_moc.o laySelectStippleForm_moc.o laySession_moc.o laySettingsForm_moc.o layTechSetupDialog_moc.o layTipDialog_moc.o layWidgets_moc.o rbaConsoleImpl_moc.o rbaRuntimeErrorForm_moc.o rdbInfoWidget_moc.o rdbMarkerBrowser_moc.o rdbMarkerBrowserDialog_moc.o rdbMarkerBrowserPage_moc.o tlDeferredExecution_moc.o resources.o /usr/lib64/libruby19-static.a -L/usr/lib64/qt4 -lQtGui -lQtCore -lQtXml -lrt -lstdc++ -lcrypt -ldl -lz 
/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.2/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib64/libruby19-static.a(thread.o): undefined reference to symbol 'pthread_condattr_setclock@@GLIBC_2.3.3'
/lib64/libpthread.so.0: error adding symbols: DSO missing from command line
collect2: error: ld returned 1 exit status
/var/tmp/portage/sci-electronics/klayout-0.22.9/work/ruby19/klayout-0.22.9/src/Makefile.body:589: recipe for target 'klayout' failed
make[1]: *** [klayout] Error 1
make[1]: Leaving directory '/var/tmp/portage/sci-electronics/klayout-0.22.9/work/ruby19/klayout-0.22.9/build.linux-gentoo/main'
Makefile:16: recipe for target 'all' failed
make: *** [all] Error 1
 * ERROR: sci-electronics/klayout-0.22.9::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-electronics/klayout-0.22.9::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-electronics/klayout-0.22.9::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-electronics:klayout-0.22.9:20150125-025020.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-electronics/klayout-0.22.9/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-electronics/klayout-0.22.9/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-electronics/klayout-0.22.9/work/ruby19/klayout-0.22.9/build.linux-gentoo'
 * S: '/var/tmp/portage/sci-electronics/klayout-0.22.9/work/ruby19/klayout-0.22.9'
!!! When you file a bug report, please include the following information:
GENTOO_VM=  CLASSPATH="" JAVA_HOME="/etc/java-config-2/current-system-vm"
JAVACFLAGS="" COMPILER=""
and of course, the output of emerge --info =klayout-0.22.9


! ! !  This is a build bot chroot located at a hardened amd64 host ! ! !

Portage 2.2.15 (python 3.3.5-final-0, hardened/linux/amd64, gcc-4.9.2, glibc-2.20-r1, 3.18.3-hardened x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-3.18.3-hardened-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2
KiB Mem:    16166860 total,   2213136 free
KiB Swap:   16777212 total,  16754516 free
Timestamp of tree: Sat, 24 Jan 2015 21:45:01 +0000
sh bash 4.3_p33-r1
ld GNU ld (Gentoo 2.24 p1.4) 2.24
distcc 3.2rc1 x86_64-pc-linux-gnu [disabled]
ccache version 3.2.1 [disabled]
app-shells/bash:          4.3_p33-r1
dev-java/java-config:     2.2.0
dev-lang/perl:            5.20.1-r4
dev-lang/python:          2.7.9-r1, 3.3.5-r1, 3.4.2
dev-util/ccache:          3.2.1-r1
dev-util/cmake:           3.1.0
dev-util/pkgconfig:       0.28-r2
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.13.8
sys-apps/sandbox:         2.6-r1
sys-devel/autoconf:       2.13, 2.69
sys-devel/automake:       1.9.6-r4, 1.10.3-r1, 1.11.6-r1, 1.13.4, 1.15
sys-devel/binutils:       2.24-r3
sys-devel/gcc:            4.9.2
sys-devel/gcc-config:     1.8
sys-devel/libtool:        2.4.5
sys-devel/make:           4.1-r1
sys-kernel/linux-headers: 3.18 (virtual/os-headers)
sys-libs/glibc:           2.20-r1
Repositories: gentoo
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /var/lib/hsqldb /var/lib/i2pd/certificates /var/spool/torque"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe"
DISTDIR="/usr/portage/distfiles"
EMERGE_DEFAULT_OPTS="--nospinner --tree --quiet-build --deep --jobs 1"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://mirror.leaseweb.com/gentoo/ http://ftp.uni-erlangen.de/pub/mirrors/gentoo http://ftp-stud.hs-esslingen.de/pub/Mirrors/gentoo/ http://gd.tuwien.ac.at/opsys/linux/gentoo/"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY=""
SYNC="rsync://rsync.de.gentoo.org/gentoo-portage"
USE="X acl aes-ni alsa amd64 apache2 avx avx2 berkdb bzip2 cli corefonts cracklib crypt cups cxx dbus dnssec dri drmkms dvd ecc ffmpeg fontconfig fortran fpm gdbm git gtk gudev gui hardened iconv isag jpeg justify libvirtd logrotate macvtap mbox minizip mmx modules multilib mysql ncurses nls nptl ogg opengl openmp pam pax_kernel pcre plasma png policykit qemu qt3support qt4 readline session spice sse sse2 sse4 sse4_1 sse4_2 ssh-askpass ssl ssse3 tcpd theora thinkpad threads tk tls truetype uml unicode urandom usb usbredir uxa v4l v4l2 vaapi video vorbis xa xattr xmp xscreensaver xtpax xvfb xvmc zenmap zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19  ruby20" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON


The build log is stored in /var/log/portage/_emerge_20150125-042551.log
The chroot image is amd64-unstable-hardened
Comment 1 Jeroen Roovers (RETIRED) gentoo-dev 2015-01-25 08:59:53 UTC
Interesting that it picks a static libruby.
Comment 2 Andreas K. Hüttel archtester gentoo-dev 2016-12-13 20:52:51 UTC
Both that ruby and that klayout is not available anymore, so closing as obsolete. 

Please make a new bug if the problem reappears.