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Bug 529624 - [science overlay] sci-chemistry/mgltools-autodocktools-1.5.6 - runAdt: File "/usr/lib64/python2.7/site-packages/opengltk/wrapper/gl_wrapper.py", line 401, in glMultMatrixf _gllib.glMultMatrixf( m) ValueError: NULL buffer not accepted
Summary: [science overlay] sci-chemistry/mgltools-autodocktools-1.5.6 - runAdt: File "...
Status: RESOLVED WONTFIX
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2014-11-17 12:47 UTC by urcindalo
Modified: 2021-05-05 17:42 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


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Description urcindalo 2014-11-17 12:47:00 UTC
When I tried to launch sci-chemistry/mgltools-autodocktools-1.5.6 today but I got this error. Since it's been a while since my last session I don't know when the problem has arisen:
=====
ramiro@box ~ $ runAdt
Run ADT from  /usr/lib64/python2.7/site-packages/AutoDockTools
Resource file used to customize PMV: /home/ramiro/.mgltools/1.5.6/Pmv/_pmvrc
Traceback (most recent call last):
  File "/usr/lib64/python2.7/site-packages/AutoDockTools/__init__.py", line 433, in runADT
    title=title, withShell= not interactive, verbose=False, gui=gui)
  File "/usr/lib64/python2.7/site-packages/Pmv/moleculeViewer.py", line 843, in __init__
    trapExceptions=trapExceptions)
  File "/usr/lib64/python2.7/site-packages/ViewerFramework/VF.py", line 370, in __init__
    verbose=verbose)
  File "/usr/lib64/python2.7/site-packages/ViewerFramework/VFGUI.py", line 360, in __init__
    verbose=verbose,guiMaster=VIEWER_root,)
  File "/usr/lib64/python2.7/site-packages/DejaVu/Viewer.py", line 689, in __init__
    cp = ClippingPlane(self.rootObject, i, self)
  File "/usr/lib64/python2.7/site-packages/DejaVu/Clip.py", line 53, in __init__
    self.Reset()
  File "/usr/lib64/python2.7/site-packages/DejaVu/Clip.py", line 77, in Reset
    self.FrameTransform()
  File "/usr/lib64/python2.7/site-packages/DejaVu/Clip.py", line 102, in FrameTransform
    GL.glMultMatrixf(self.object.Ri)
  File "/usr/lib64/python2.7/site-packages/opengltk/wrapper/gl_wrapper.py", line 401, in glMultMatrixf
    _gllib.glMultMatrixf( m)
ValueError: NULL buffer not accepted
hit enter to continue
=====

I re-emerged every mgltools package, to no avail.
It is interesting that every time I invoke the runAdt command the following *broken* symlink is freshly created in my ~/.mgltools folder:
=====
ramiro@box ~/.mgltools $ ls -la
total 4
drwxr-xr-x 5 ramiro ramiro 4096 nov 17 13:31 1.5.6
lrwxrwxrwx 1 ramiro ramiro   20 nov 17 13:40 pythonsh -> /usr/bin/python2.7sh
=====
Comment 1 Nowa Ammerlaan gentoo-dev 2021-05-05 17:42:37 UTC
WONTFIX because package has been removed