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Bug 523072 - dev-lang/python-2.7.8[sqlite] /usr/lib/libsqlite3.so: error adding symbols: File in wrong format
Summary: dev-lang/python-2.7.8[sqlite] /usr/lib/libsqlite3.so: error adding symbols: F...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: [OLD] Library (show other bugs)
Hardware: MIPS Linux
: Normal normal (vote)
Assignee: Python Gentoo Team
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2014-09-17 21:22 UTC by Markos Chandras (RETIRED)
Modified: 2015-07-13 20:32 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,146.54 KB, text/x-log)
2014-09-17 21:22 UTC, Markos Chandras (RETIRED)
Details
package history (dev-lang-python-2.7.9-r1-20150713-191740.pks,181.88 KB, text/plain)
2015-07-13 19:31 UTC, Toralf Förster
Details
emerge log (dev-lang-python-2.7.9-r1-20150713-191740.log,132.72 KB, text/plain)
2015-07-13 19:32 UTC, Toralf Förster
Details

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Description Markos Chandras (RETIRED) gentoo-dev 2014-09-17 21:22:06 UTC
Created attachment 384964 [details]
build.log

Portage 2.2.13 (python 2.7.8-final-0, default/linux/mips/13.0/multilib/n32, gcc-4.8.3, glibc-2.19-r1
=================================================================
KiB Mem:     4038500 total,   1205412 free
KiB Swap:          0 total,         0 free
Timestamp of tree: Wed, 17 Sep 2014 03:15:01 +0000
ld GNU ld (Gentoo 2.24 p1.4) 2.24
app-shells/bash:          4.2_p47
dev-lang/python:          2.7.8, 3.3.5-r1, 3.4.1
dev-util/pkgconfig:       0.28-r2
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.13.1
sys-apps/sandbox:         2.6-r1
sys-devel/autoconf:       2.69
sys-devel/automake:       1.14.1
sys-devel/binutils:       2.24-r3
sys-devel/gcc:            4.8.3
sys-devel/gcc-config:     1.8
sys-devel/libtool:        2.4.2-r1
sys-devel/make:           4.0-r1
sys-kernel/linux-headers: 3.16 (virtual/os-headers)
sys-libs/glibc:           2.19-r1
Repositories: gentoo
ACCEPT_KEYWORDS="mips ~mips"
ACCEPT_LICENSE="* -@EULA"
CBUILD="mips64-unknown-linux-gnu"
CFLAGS="-O2 -march=mips64r2 -mplt -pipe"
CHOST="mips64-unknown-linux-gnu"
CONFIG_PROTECT="/etc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -march=mips64r2 -mplt -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs buildpkg config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://mirror.bytemark.co.uk/gentoo"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j20"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY=""
USE="acl berkdb bzip2 cli cracklib crypt cxx gdbm iconv ipv6 mips modules multilib ncurses nls nptl pam pcre readline session ssl tcpd unicode zlib" ABI_MIPS="n32 o32" ALSA_CARDS="au1x00" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="fbdev impact newport dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Comment 1 Markos Chandras (RETIRED) gentoo-dev 2014-09-17 21:29:22 UTC
actually the problem is here

mips64-unknown-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,--as-needed -L. -Wl,-O1 -Wl,--as-needed -L. -fno-strict-aliasing -O2 -march=mips64r2 -mplt -pipe -fwrapv -DNDEBUG -I. -IInclude -I/var/tmp/portage/dev-lang/python-2.7.8/work/Python-2.7.8/Include build/temp.linux-mips64-2.7/var/tmp/portage/dev-lang/python-2.7.8/work/Python-2.7.8/Modules/_sqlite/cache.o build/temp.linux-mips64-2.7/var/tmp/portage/dev-lang/python-2.7.8/work/Python-2.7.8/Modules/_sqlite/connection.o build/temp.linux-mips64-2.7/var/tmp/portage/dev-lang/python-2.7.8/work/Python-2.7.8/Modules/_sqlite/cursor.o build/temp.linux-mips64-2.7/var/tmp/portage/dev-lang/python-2.7.8/work/Python-2.7.8/Modules/_sqlite/microprotocols.o build/temp.linux-mips64-2.7/var/tmp/portage/dev-lang/python-2.7.8/work/Python-2.7.8/Modules/_sqlite/module.o build/temp.linux-mips64-2.7/var/tmp/portage/dev-lang/python-2.7.8/work/Python-2.7.8/Modules/_sqlite/prepare_protocol.o build/temp.linux-mips64-2.7/var/tmp/portage/dev-lang/python-2.7.8/work/Python-2.7.8/Modules/_sqlite/row.o build/temp.linux-mips64-2.7/var/tmp/portage/dev-lang/python-2.7.8/work/Python-2.7.8/Modules/_sqlite/statement.o build/temp.linux-mips64-2.7/var/tmp/portage/dev-lang/python-2.7.8/work/Python-2.7.8/Modules/_sqlite/util.o -L/usr/lib -L/usr/local/lib -L. -lsqlite3 -lpython2.7 -o build/lib.linux-mips64-2.7/_sqlite3.so
/usr/lib/libsqlite3.so: error adding symbols: File in wrong format
collect2: error: ld returned 1 exit status

/usr/lib32 should have been used instead since this is a n32 build. We had similar problems in python in the past as well.

@Python any idea?
Comment 2 Mike Gilbert gentoo-dev 2014-09-17 21:38:28 UTC
setup.py has this, which is probably to blame here.

        if sqlite_incdir:
            sqlite_dirs_to_check = [
                os.path.join(sqlite_incdir, '..', 'lib64'),
                os.path.join(sqlite_incdir, '..', 'lib'),
                os.path.join(sqlite_incdir, '..', '..', 'lib64'),
                os.path.join(sqlite_incdir, '..', '..', 'lib'),
            ]
            sqlite_libfile = self.compiler.find_library_file(
                                sqlite_dirs_to_check + lib_dirs, 'sqlite3')
            if sqlite_libfile:
                sqlite_libdir = [os.path.abspath(os.path.dirname(sqlite_libfile))]
Comment 3 Mike Gilbert gentoo-dev 2014-09-17 21:42:25 UTC
And this probably worked in the past because multilib support was only recently added to dev-db/sqlite.
Comment 4 Markos Chandras (RETIRED) gentoo-dev 2014-09-18 07:38:55 UTC
(In reply to Mike Gilbert from comment #3)
> And this probably worked in the past because multilib support was only
> recently added to dev-db/sqlite.

Hmm i am not sure about that. it's the first time I try to build python[sqlite] but it seems like a reasonable assumption.
Comment 5 Arfrever Frehtes Taifersar Arahesis 2014-09-21 21:55:36 UTC
Please test dev-lang/python-2.7.9_pre20140921::progress, which contains changes supposed to fix this problem.
Comment 6 Mike Gilbert gentoo-dev 2014-09-22 16:49:48 UTC
I have updated the Gentoo patchset to include Arfrever's changes. Please confirm this is working now.

+  22 Sep 2014; Mike Gilbert <floppym@gentoo.org> python-2.7.8.ebuild:
+  New patchset, should resolve bug 523072. Thanks for Arfrever for the updates.

I will also need to update our 3.3 and 3.4 patchsets.
Comment 7 Markos Chandras (RETIRED) gentoo-dev 2014-10-04 11:33:42 UTC
Thanks I will try this soon
Comment 8 Toralf Förster gentoo-dev 2015-07-13 19:31:34 UTC
Created attachment 406702 [details]
package history

This is not a mips problem, failed here too :



  -----------------------------------------------------------------

  This is an stable amd64 chroot image (named amd64-hardened-stable_20150708-150300) at a hardened host acting as a tinderbox.

Portage 2.2.18 (python 2.7.9-final-0, hardened/linux/amd64, gcc-4.8.4, glibc-2.20-r2, 4.0.8-hardened x86_64)
=================================================================
System uname: Linux-4.0.8-hardened-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2
KiB Mem:    16164692 total,   2878632 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Mon, 13 Jul 2015 17:45:01 +0000
sh bash 4.3_p33-r2
ld GNU ld (Gentoo 2.24 p1.4) 2.24
ccache version 3.1.9 [disabled]
app-shells/bash:          4.3_p33-r2::gentoo
dev-java/java-config:     2.2.0::gentoo
dev-lang/perl:            5.20.2::gentoo
dev-lang/python:          2.7.9-r1::gentoo, 3.3.5-r1::gentoo
dev-util/ccache:          3.1.9-r4::gentoo
dev-util/pkgconfig:       0.28-r2::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/openrc:          0.17::gentoo
sys-apps/sandbox:         2.6-r1::gentoo
sys-devel/autoconf:       2.69::gentoo
sys-devel/automake:       1.9.6-r4::gentoo, 1.11.6-r1::gentoo, 1.13.4::gentoo, 1.14.1::gentoo
sys-devel/binutils:       2.24-r3::gentoo
sys-devel/gcc:            4.8.4::gentoo
sys-devel/gcc-config:     1.7.3::gentoo
sys-devel/libtool:        2.4.6::gentoo
sys-devel/make:           4.1-r1::gentoo
sys-kernel/linux-headers: 3.18::gentoo (virtual/os-headers)
sys-libs/glibc:           2.20-r2::gentoo
Repositories:

local
    location: /usr/local/portage
    masters: gentoo

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: 9999

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /etc/stunnel/stunnel.conf /usr/share/easy-rsa /var/spool/torque"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/var/tmp/distfiles"
EMERGE_DEFAULT_OPTS="--nospinner --tree --quiet-build"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
USE="acl aes-ni alsa amd64 apache2 avx avx2 berkdb btrfs bzip2 cairo cgi cli corefonts cracklib crypt cups curl cxx dbus designer dnssec dot dri drmkms dvd ecc extraengine fortran fpm gd gdbm gif gnutls gtk gudev gui hardened iconv icu imap introspection ipv6 jadetex jpeg justify kvm lapack libkms libvirtd logrotate mbox minizip mmx mmxext modules multilib mysql ncurses nls nptl nss opencv openmp pam pax_kernel pcre pcre16 pdo pie plasma png policykit pulseaudio pwquality python qml qt3support qt4 qt5 readline scrpyt sdl session smartcard spice sqlite sse sse2 sse4 sse4_1 sse4_2 ssh-askpass ssl ssp ssse3 tcl tcpd tls truetype uml unicode urandom usb usbredir v4l v4l2 video widgets xattr xkb xscreensaver xslt xtpax xvfb xvmc zenmap zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" CURL_SSL="nss" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb nc urses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en en_GB" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Comment 9 Toralf Förster gentoo-dev 2015-07-13 19:32:41 UTC
Created attachment 406704 [details]
emerge log

=dev-lang/python-2.7.9-r1 log
Comment 10 Mike Gilbert gentoo-dev 2015-07-13 20:31:25 UTC
(In reply to Toralf Förster from comment #8)

Your build error is completely different; file a new bug.
Comment 11 Mike Gilbert gentoo-dev 2015-07-13 20:32:58 UTC
I'm assuming this bug is fixed. Please reopen if that is not the case.