Hello, this is readseq, a small utility that converts between many file formats for nucleotide/amino acid sequences. It has a dirty compilation process (made by a biologist I guess :-) ), which I left unchanged as it does work. I had to change the emake into a simple make though, since it doesn't cope well with -j2 or other. I suggest it to be added to the app-sci category. Regards, koen
Created attachment 31988 [details] readseq-1.ebuild
Created attachment 32554 [details] readseq-1.ebuild - Revised ebuild - Removed "inherit flag-o-matic gnuconfig" (no inherited function was used). - Changed KEYWORDS (x86 -> ~x86) - Corrected license (GPL-2 -> public-domain. I don't see GPL-2 mentionned anywhere on the home page; correct me if I am wrong.) - Removed unnecessary src_unpack(). - Compile with user's CFLAGS. - Install documentation. - Made SLOTable since we'll probably want to add the more recent (readseq-2) implementation, programmed in Java, and which offers a Web interface. (readseq-1 is symlinked to readseq. Users can define their prefered readseq implementation, if both are installed, using an alias. The last installed readseq implementation is the default.)
Created attachment 32555 [details] metadata.xml - Assigns to sci herd. - Provides long description.
Created attachment 33140 [details] readseq-1.ebuild - Revised ebuild - Dropped the SLOT in favor of two different packages. Although both readseq implementations offer a command-line interface with the same options, they vary greatly for the rest and do not benefit from SLOTing. - Dropped the "default readseq implementation" since it could broke many existing readseq scripts.
Commited.
