Created attachment 382220 [details] build.log 'emerge sage-doc' fails with: ... >>> Compiling source in /var/tmp/portage/sci-mathematics/sage-doc-6.2/work/sage-6.2/src ... * python2_7: running distutils-r1_run_phase python_compile Setting permissions of DOT_SAGE directory so only you can read and write it. Building reference manual, first pass. [repl ] Exception occurred: [repl ] File "/var/tmp/portage/sci-mathematics/sage-doc-6.2/work/sage-6.2/src/doc/common/conf.py", line 206, in <module> [repl ] sagenb_path = working_set.find(Requirement.parse('sagenb')).location [repl ] AttributeError: 'NoneType' object has no attribute 'location' [repl ] The full traceback has been saved in /var/tmp/portage/sci-mathematics/sage-doc-6.2/temp/python2.7/sphinx-err-yeX1DZ.log, if you want to report the issue to the developers. [repl ] Please also report this if it was a user error, so that a better error message can be provided next time. [repl ] A bug report can be filed in the tracker at <https://bitbucket.org/birkenfeld/sphinx/issues/>. Thanks! [combinat ] Exception occurred: [combinat ] File "/var/tmp/portage/sci-mathematics/sage-doc-6.2/work/sage-6.2/src/doc/common/conf.py", line 206, in <module> [combinat ] sagenb_path = working_set.find(Requirement.parse('sagenb')).location [combinat ] AttributeError: 'NoneType' object has no attribute 'location' [combinat ] The full traceback has been saved in /var/tmp/portage/sci-mathematics/sage-doc-6.2/temp/python2.7/sphinx-err-M0QuLP.log, if you want to report the issue to the developers. [combinat ] Please also report this if it was a user error, so that a better error message can be provided next time. [combinat ] A bug report can be filed in the tracker at <https://bitbucket.org/birkenfeld/sphinx/issues/>. Thanks! Error building the documentation. Note: incremental documentation builds sometimes cause spurious error messages. To be certain that these are real errors, run "make doc-clean" first and try again. Traceback (most recent call last): File "doc/common/builder.py", line 1477, in <module> getattr(get_builder(name), type)() File "doc/common/builder.py", line 276, in _wrapper getattr(get_builder(document), 'inventory')(*args, **kwds) File "doc/common/builder.py", line 487, in _wrapper x.get(99999) File "/usr/lib64/python2.7/multiprocessing/pool.py", line 558, in get raise self._value OSError: [repl ] Exception occurred: * ERROR: sci-mathematics/sage-doc-6.2::sage-on-gentoo failed (compile phase): root@lynx2:/usr/src/linux(313)# emerge --info '=sci-mathematics/sage-doc-6.2::sage-on-gentoo' Portage 2.2.11 (python 2.7.8-final-0, default/linux/amd64/13.0/desktop, gcc-4.8.3, glibc-2.19-r1, 3.15.7-gentoo x86_64) ================================================================= System Settings ================================================================= System uname: Linux-3.15.7-gentoo-x86_64-Intel-R-_Core-TM-2_Duo_CPU_T7500_@_2.20GHz-with-gentoo-2.2 KiB Mem: 3972144 total, 417520 free KiB Swap: 12582908 total, 12092748 free Timestamp of tree: Mon, 04 Aug 2014 02:30:01 +0000 ld GNU ld (GNU Binutils) 2.24 app-shells/bash: 4.2_p47 dev-java/java-config: 2.2.0 dev-lang/python: 2.7.8, 3.3.5-r1, 3.4.1 dev-util/cmake: 2.8.12.2-r1 dev-util/pkgconfig: 0.28-r2 sys-apps/baselayout: 2.2 sys-apps/openrc: 0.12.4 sys-apps/sandbox: 2.6-r1 sys-devel/autoconf: 2.13, 2.69 sys-devel/automake: 1.9.6-r3, 1.10.3, 1.11.6, 1.12.6, 1.14.1 sys-devel/binutils: 2.24-r3 sys-devel/gcc: 4.8.3 sys-devel/gcc-config: 1.8 sys-devel/libtool: 2.4.2-r1 sys-devel/make: 4.0-r1 sys-kernel/linux-headers: 3.15 (virtual/os-headers) sys-libs/glibc: 2.19-r1 Repositories: gentoo sunrise science x11 sage-on-gentoo x-portage g-cpan g-octave ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* -@EULA PUEL Intel-SDP dlj-1.1 skype-eula skype-4.0.0.7-copyright googleearth AdobeFlash-11.x cadsoft Oracle-BCLA-JavaSE MakeMKV-EULA NVIDIA-CUDA Nero-AAC-EULA GIMPS" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/config /usr/share/gnupg/qualified.txt /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.5/ext-active/ /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/udev/rules.d" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/usr/portage/distfiles" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-march=native -O2 -pipe" GENTOO_MIRRORS="http://distfiles.gentoo.org" LANG="en_US.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j3" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage_lynx2" PORTDIR_OVERLAY="/var/lib/layman/sunrise /var/lib/layman/science /var/lib/layman/x11 /var/lib/layman/sage-on-gentoo /usr/local/portage /var/lib/cpan /var/lib/g-octave" USE="64bit R X Xaw3d a52 aac acl acpi admin afs alsa amd64 ao apache2 apng applet archive armadillo arpack asf aspell atlas audacious audiofile automap automount bash-completion berkdb blas blast bluetooth bluray boost branding bzip2 cairo cdda cddb cdf cdio cdparanoia cdr cgi chm cli cmake consolekit cracklib crypt css cups curl cxx daap db dbi dbm dbus declarative designer devhelp device-mapper dga dia dirac djvu doc dot dri ds2490 ds9097 ds9097u dts dv dvb dvd dvdr dvi dynamicplugin eds egl elf emacs emboss emf encode epiphany evo examples exif expat extensions extra extras faac faad fam ffmpeg fftw firefox fits flac fltk fontconfig foomaticdb fortran fortran95 fpm fpx fuse g3dvl garmin gcj gd gdal gdbm gdu gedit geoip geolocation geos gfortran gif gimp git glade glib glpk gml gmp gnome gnome-keyring gnome-print gnuplot gnutls gold gphoto2 gpm grammar graphics graphtft graphviz grass gsl gsm gstreamer gtk gtk3 gudev guile hddtemp hdf hdf5 hdri html http httpd hvm hwdb iconv icq icu id3tag ide imagemagick imap inotify introspection ipod ipv6 irda ithreads jabber jadetex java jbig jit john jpeg jpeg2k kate kde kdepim kdrive kerberos keymap kpathsea kvm ladspa lame lapack laptop latex lcms ldap lensfun libffi libkms libnotify libsamplerate lirc live lua lzma lzo mad mail maildir mapnik math matroska media-library mercurial mikmod mkl mmx mmxext mng mod modules mono motif mozilla mp3 mp4 mpeg mpi mplayer mtp multilib multimedia musepack musicbrainz mysql mysqli nautilus ncurses netcdf netpbm network networking nfs nls nntp nptl nsplugin ntfs ntp numpy obex objc ocaml ocr octave odbc ofa ogdi ogg openexr opengl openmp openvg pam pango pcre pda pdf pdl2 perl plasma plotutils plugins png podcast policykit portaudio posix postgres postscript ppds preview-latex proj projectm pstricks pulseaudio python python-bindings q32 qemu qhull qt3support qt4 quicktime raw readline reiserfs reports rle romio rpc rrdcgi rrdtool sage samba sasl schroedinger science sdk sdl secure-delete semantic-desktop server session shout sip slang slp smart smbclient smp sms sndfile snmp soap sockets sound soup sox speex spell sql sqlite sse sse2 ssl ssse3 startup-notification stlport subtitles subversion sudo suexec svg svm swig systemd szip t1lib tcl tcpd tex tex4ht texmacs theora thesaurus thinkpad threads thunderbird tidy tiff tk tools truetype udev udisks unicode upower usb utempter v4l vaapi vala valgrind vdpau video virt-network virtualbox visio vorbis vpx vtk wav webdav webdav-serf webkit wifi wmf wxwidgets x264 xa xattr xcb xetex xext xft xine xml xmlreader xmlrpc xpm xv xvid xvmc yaml youtube zlib zvbi" ABI_X86="64" ALSA_CARDS="intel8x0" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_core authn_dbm authn_default authn_file authz_core authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info lbmethod_byrequests log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif slotmem_shm so socache_shmcb speling status unique_id unixd userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="canon fuji ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CURL_SSL="nss" DVB_CARDS="usb-wt220u" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev synaptics void" KERNEL="linux" LCD_DEVICES="cfontz hd44780 mtxorb ncurses X lcd2usb lcdlinux png usblcd" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="de fr ru" NETBEANS_MODULES="apisupport cnd dlight enterprise ergonomics groovy gsf harness ide identity j2ee java mobility nb php profiler websvccommon xml" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-3" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" QEMU_SOFTMMU_TARGETS="arm i386 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="intel displaylink" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, SYNC, USE_PYTHON root@lynx2:/usr/src/linux(314)# emerge -pqv '=sci-mathematics/sage-doc-6.2::sage-on-gentoo' [ebuild N ] sci-mathematics/sage-doc-6.2 USE="html" PYTHON_TARGETS="python2_7"
The contents of /var/tmp/portage/sci-mathematics/sage-doc-6.2/temp/python2.7/sphinx-err-yeX1DZ.log is" # Sphinx version: 1.2.2 # Python version: 2.7.8 # Docutils version: 0.12 release # Jinja2 version: 2.7.3 # Loaded extensions: Traceback (most recent call last): File "/usr/lib64/python2.7/site-packages/sphinx/cmdline.py", line 253, in main warningiserror, tags, verbosity, parallel) File "/usr/lib64/python2.7/site-packages/sphinx/application.py", line 107, in __init__ confoverrides or {}, self.tags) File "/usr/lib64/python2.7/site-packages/sphinx/config.py", line 229, in __init__ execfile_(filename, config) File "/usr/lib64/python2.7/site-packages/sphinx/util/pycompat.py", line 105, in execfile_ exec code in _globals File "conf.py", line 16, in <module> # --------------------- File "/var/tmp/portage/sci-mathematics/sage-doc-6.2/work/sage-6.2/src/doc/common/conf.py", line 206, in <module> sagenb_path = working_set.find(Requirement.parse('sagenb')).location AttributeError: 'NoneType' object has no attribute 'location'
I hit the error on the next system. On the new system ("wildcat") I could use successfully the recipe of Comment 9 of Bug 512284. I.e., I did: 1st: added -pdf to sci-mathematics/sage-doc in /etc/portage/package.use 2nd: 'emerge -v1 sage-notebook' 3rd: 'emerge --update --newuse --deep --with-bdeps=y sage' On the first system (lynx2) it did not work. The third step fails with: ... [dynamics ] Encoding error: [dynamics ] 'utf8' codec can't decode byte 0x80 in position 61: invalid start byte [dynamics ] The full traceback has been saved in /var/tmp/portage/sci-mathematics/sage-doc-6.2/temp/python2.7/sphinx-err-gGpks5.log, if you want to report the issue to the developers. Build finished. The built documents can be found in /var/tmp/portage/sci-mathematics/sage-doc-6.2/work/sage-6.2/src/doc/output/html/en/reference/dynamics [arithgrou] WARNING: intersphinx inventory '/var/tmp/portage/sci-mathematics/sage-doc-6.2/work/sage-6.2/src/doc/output/inventory/en/reference/functions/objects.inv' not readable due to error: Error -3 while decompressing: invalid distance too far back [arithgrou] WARNING: intersphinx inventory '/var/tmp/portage/sci-mathematics/sage-doc-6.2/work/sage-6.2/src/doc/output/inventory/en/reference/plotting/objects.inv' not readable due to error: Error -3 while decompressing: invalid distance too far back [polynomia] reading sources... [ 58%] sage/rings/polynomial/polynomial_element_generic ... [combinat ] reading sources... [ 13%] sage/combinat/core Error building the documentation. Note: incremental documentation builds sometimes cause spurious error messages. To be certain that these are real errors, run "make doc-clean" first and try again. Traceback (most recent call last): File "doc/common/builder.py", line 1477, in <module> getattr(get_builder(name), type)() File "doc/common/builder.py", line 280, in _wrapper getattr(get_builder(document), name)(*args, **kwds) File "doc/common/builder.py", line 487, in _wrapper x.get(99999) File "/usr/lib64/python2.7/multiprocessing/pool.py", line 558, in get raise self._value OSError: [arithgrou] WARNING: intersphinx inventory '/var/tmp/portage/sci-mathematics/sage-doc-6.2/work/sage-6.2/src/doc/output/inventory/en/reference/functions/objects.inv' not readable due to error: Error -3 while decompressing: invalid distance too far back * ERROR: sci-mathematics/sage-doc-6.2::sage-on-gentoo failed (compile phase): * failed to produce html doc
(In reply to Juergen Rose from comment #2) > I hit the error on the next system. On the new system ("wildcat") I could > use successfully the recipe of Comment 9 of Bug 512284. I.e., I did: > > 1st: added -pdf to sci-mathematics/sage-doc in /etc/portage/package.use > 2nd: 'emerge -v1 sage-notebook' > 3rd: 'emerge --update --newuse --deep --with-bdeps=y sage' > > > On the first system (lynx2) it did not work. The third step fails with: > ... > > > [dynamics ] Encoding error: > [dynamics ] 'utf8' codec can't decode byte 0x80 in position 61: invalid > start byte > [dynamics ] The full traceback has been saved in > /var/tmp/portage/sci-mathematics/sage-doc-6.2/temp/python2.7/sphinx-err- > gGpks5.log, if you want to report the issue to the developers. > Build finished. The built documents can be found in > /var/tmp/portage/sci-mathematics/sage-doc-6.2/work/sage-6.2/src/doc/output/ > html/en/reference/dynamics > [arithgrou] WARNING: intersphinx inventory > '/var/tmp/portage/sci-mathematics/sage-doc-6.2/work/sage-6.2/src/doc/output/ > inventory/en/reference/functions/objects.inv' not readable due to error: > Error -3 while decompressing: invalid distance too far back > [arithgrou] WARNING: intersphinx inventory > '/var/tmp/portage/sci-mathematics/sage-doc-6.2/work/sage-6.2/src/doc/output/ > inventory/en/reference/plotting/objects.inv' not readable due to error: > Error -3 while decompressing: invalid distance too far back > [polynomia] reading sources... [ 58%] > sage/rings/polynomial/polynomial_element_generic > ... > [combinat ] reading sources... [ 13%] sage/combinat/core > Error building the documentation. > > Note: incremental documentation builds sometimes cause spurious > error messages. To be certain that these are real errors, run > "make doc-clean" first and try again. > Traceback (most recent call last): > File "doc/common/builder.py", line 1477, in <module> > getattr(get_builder(name), type)() > File "doc/common/builder.py", line 280, in _wrapper > getattr(get_builder(document), name)(*args, **kwds) > File "doc/common/builder.py", line 487, in _wrapper > x.get(99999) > File "/usr/lib64/python2.7/multiprocessing/pool.py", line 558, in get > raise self._value > OSError: [arithgrou] WARNING: intersphinx inventory > '/var/tmp/portage/sci-mathematics/sage-doc-6.2/work/sage-6.2/src/doc/output/ > inventory/en/reference/functions/objects.inv' not readable due to error: > Error -3 while decompressing: invalid distance too far back > > * ERROR: sci-mathematics/sage-doc-6.2::sage-on-gentoo failed (compile > phase): > * failed to produce html doc A subsequent 'MAKEOPTS=-j1 emerge -v1 sage-doc' was successful.
Of late building documentation in parallel has been fragile on some systems. Of course I now recommend people to use sage-doc-bin by default.
*** Bug 520360 has been marked as a duplicate of this bug. ***
