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Bug 508902 - =sci-libs/scipy-0.13.3 - setup.py: ImportError: /usr/lib64/libatlas.so.3: undefined symbol: ATL_DecAtomicCount
Summary: =sci-libs/scipy-0.13.3 - setup.py: ImportError: /usr/lib64/libatlas.so.3: und...
Status: RESOLVED TEST-REQUEST
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: [OLD] Library (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2014-04-27 19:43 UTC by Jason Mours
Modified: 2015-02-19 08:40 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---

Attachments
emerge-info (scipy-0.13.3-emerge.info,17.88 KB, text/plain)
2014-04-27 19:44 UTC, Jason Mours 		Details
build.log (scipy-0.13.3-build.log,101.11 KB, text/plain)
2014-04-27 19:44 UTC, Jason Mours 		Details
environment (scipy-0.13.3.environment,146.90 KB, text/plain)
2014-04-27 19:44 UTC, Jason Mours 		Details
numpy-1.8.1-build.log (numpy-1.8.1-build.log,652.49 KB, text/plain)
2014-04-28 16:54 UTC, Jason Mours 		Details
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Description Jason Mours 2014-04-27 19:43:45 UTC 
Having issues with with sci-libs/scipy-0.13.3 emerging with dev-python/numpy-1.8.1 and sci-libs/atlas-3.10.1-r2. Providing trace:

Processing scipy/special/_ufuncs.pyx
/usr/bin/python3.3 setup.py build config_fc --noopt --noarch
Traceback (most recent call last):
  File "setup.py", line 230, in <module>
    setup_package()
  File "setup.py", line 218, in setup_package
    from numpy.distutils.core import setup
  File "/usr/lib64/python3.3/site-packages/numpy/__init__.py", line 153, in <module>
    from . import add_newdocs
  File "/usr/lib64/python3.3/site-packages/numpy/add_newdocs.py", line 13, in <module>
    from numpy.lib import add_newdoc
  File "/usr/lib64/python3.3/site-packages/numpy/lib/__init__.py", line 18, in <module>
    from .polynomial import *
  File "/usr/lib64/python3.3/site-packages/numpy/lib/polynomial.py", line 19, in <module>
    from numpy.linalg import eigvals, lstsq, inv
  File "/usr/lib64/python3.3/site-packages/numpy/linalg/__init__.py", line 50, in <module>
    from .linalg import *
  File "/usr/lib64/python3.3/site-packages/numpy/linalg/linalg.py", line 29, in <module>
    from numpy.linalg import lapack_lite, _umath_linalg
ImportError: /usr/lib64/libatlas.so.3: undefined symbol: ATL_DecAtomicCount

: Posting build.log and environment

Reproducible: Always
Comment 1 Jason Mours 2014-04-27 19:44:16 UTC 
Created attachment 375890 [details]
emerge-info
Comment 2 Jason Mours 2014-04-27 19:44:32 UTC 
Created attachment 375892 [details]
build.log
Comment 3 Jason Mours 2014-04-27 19:44:47 UTC 
Created attachment 375894 [details]
environment
Comment 4 Justin Lecher (RETIRED) gentoo-dev 2014-04-28 06:05:36 UTC 
Could you please add a numpy build.log?
Comment 5 Jason Mours 2014-04-28 16:54:13 UTC 
Created attachment 375960 [details]
numpy-1.8.1-build.log

Numpy build.log
Comment 6 Justin Lecher (RETIRED) gentoo-dev 2015-02-19 08:40:01 UTC 
Please see whether this is still valid for scipy 0.14/0.15.