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Bug 505468 - sci-libs/scipy - numpy.distutils.system_info.BlasNotFoundError: Blas (http://www.netlib.org/blas/) libraries not found.
Summary: sci-libs/scipy - numpy.distutils.system_info.BlasNotFoundError: Blas (ht...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: [OLD] Development (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2014-03-23 16:09 UTC by Abulhair Saparov
Modified: 2014-03-25 21:24 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---

Attachments
build log from emerge (build.log,53.69 KB, text/plain)
2014-03-23 16:09 UTC, Abulhair Saparov 		Details
output of emerge --info (emerge_info,5.56 KB, text/plain)
2014-03-23 16:09 UTC, Abulhair Saparov 		Details
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Description Abulhair Saparov 2014-03-23 16:09:13 UTC 
Created attachment 373318 [details]
build log from emerge

site.cfg for some reason had the line

blas_libs = mkl_rt, mkl_rt

Once I removed the duplicate, setup.py no longer complained about not being able to find BLAS.
Comment 1 Abulhair Saparov 2014-03-23 16:09:32 UTC 
Created attachment 373320 [details]
output of emerge --info
Comment 2 Sébastien Fabbro (RETIRED) gentoo-dev 2014-03-24 16:13:11 UTC 
could you try to re-sync and re-emerge? you might have hit bug #504618
Comment 3 Abulhair Saparov 2014-03-24 17:37:15 UTC 
Just tried syncing and re-emerging numpy and then scipy, and I get the same problem. Though I want to clarify, there is no space in "mkl_rt,mkl_rt". Not sure if that is indicative of a different bug.
Comment 4 Sébastien Fabbro (RETIRED) gentoo-dev 2014-03-25 19:45:27 UTC 
both numpy and scipy should work. re-sync and re-emerge. if it still does not work, please provide:

eselect <lib> show
pkg-config --libs <lib>

where <lib> is blas, cblas and lapack.


+  25 Mar 2014; Sébastien Fabbro <bicatali@gentoo.org> numpy-1.8.0-r1.ebuild:
+  More fixes to the site.cfg file generation
+
+  25 Mar 2014; Sébastien Fabbro <bicatali@gentoo.org> scipy-0.13.3.ebuild:
+  More fixes to the site.cfg file generation
+
Comment 5 Abulhair Saparov 2014-03-25 21:24:55 UTC 
That worked. Thanks so much!!