Bug 502532 – sci-biology/tophat-2.0.9 version bump

• Status: RESOLVED FIXED
• Product: Gentoo Linux

[Description José María Fernández González 2014-02-26 12:59:35 UTC]

Created attachment 371340 [details]
sci-biology/tophat-2.0.9.ebuild

New ebuild for sci-biology/tophat-2.0.9

This ebuild is an improved version of the one for tophat-2.0.8, as it now uses python_fix_shebang from python-single-r1 (tophat is a Python 2.7 program)

[Comment 1 José María Fernández González 2014-02-26 13:00:58 UTC]

Created attachment 371342 [details, diff]
files/tophat-2.0.9-flags.patch

Needed patch file, used by tophat-2.0.9.ebuild

[Comment 2 Jeroen Roovers (RETIRED) 2014-02-26 22:38:14 UTC]

Comment on attachment 371340 [details]
sci-biology/tophat-2.0.9.ebuild

--- tophat-2.0.8.ebuild 2013-03-13 17:33:37.000000000 +0100
+++ -   2014-02-26 23:37:53.128023516 +0100
@@ -5,8 +5,9 @@
 EAPI=5
 
 AUTOTOOLS_AUTORECONF=yes
+PYTHON_COMPAT=( python2_7 )
 
-inherit autotools-utils
+inherit autotools-utils python-single-r1
 
 DESCRIPTION="A fast splice junction mapper for RNA-Seq reads"
 HOMEPAGE="http://tophat.cbcb.umd.edu/"
@@ -38,3 +39,8 @@
        )
        autotools-utils_src_configure
 }
+
+src_install() {
+       autotools-utils_src_install
+       python_fix_shebang "${ED}"/usr/bin/tophat
+}

[Comment 3 Justin Lecher (RETIRED) 2014-03-06 09:46:59 UTC]

+*tophat-2.0.9 (06 Mar 2014)
+
+  06 Mar 2014; Justin Lecher <[e-mail]> +tophat-2.0.9.ebuild,
+  +files/tophat-2.0.9-flags.patch:
+  Version Bump, #502532; thanks José María Fernández González for the new
+  ebuild
+