I upgraded my system and something nvidia-cuda related got upgraded. This upgraded some libs that nvidia-cuda-sdk files depended on so I ran emerge -av @preserved-rebuild. This in turn fails with undefined reference to `__fatbinwrap_65_tmpxft_00004934_00000000_9_simpleDeviceLibrary_compute_30_cpp1_ii_c656fbd5'. I tried switching to gcc-4.7 but this appears to have had no effect (it gave the same undefined reference ... message with gcc-4.6, can't be sure it was exactly the same symbol but it was very similar). Reproducible: Always Steps to Reproduce: 1. emerge -1av nvidia-cuda-sdk 2. 3. Actual Results: Emerge fails. Expected Results: Emerge succeeds. Portage 2.2.7 (default/linux/amd64/13.0/desktop, gcc-4.7.3, glibc-2.17, 3.10.7-gentoo-r1 x86_64) ================================================================= System Settings ================================================================= System uname: Linux-3.10.7-gentoo-r1-x86_64-Intel-R-_Xeon-R-_CPU_X3350_@_2.66GHz-with-gentoo-2.2 KiB Mem: 8182112 total, 1193320 free KiB Swap: 16787772 total, 16168136 free Timestamp of tree: Tue, 07 Jan 2014 10:00:01 +0000 ld GNU ld (GNU Binutils) 2.23.2 app-shells/bash: 4.2_p45 dev-java/java-config: 2.1.12-r1 dev-lang/python: 2.6.8-r3, 2.7.5-r3, 3.3.2-r2 dev-util/cmake: 2.8.11.2 dev-util/pkgconfig: 0.28 sys-apps/baselayout: 2.2 sys-apps/openrc: 0.12.4 sys-apps/sandbox: 2.6-r1 sys-devel/autoconf: 2.13, 2.69 sys-devel/automake: 1.11.6, 1.12.6, 1.13.4 sys-devel/binutils: 2.23.2 sys-devel/gcc: 4.6.3, 4.7.3-r1 sys-devel/gcc-config: 1.7.3 sys-devel/libtool: 2.4.2 sys-devel/make: 3.82-r4 sys-kernel/linux-headers: 3.9 (virtual/os-headers) sys-libs/glibc: 2.17 Repositories: gentoo last-hope x-portage ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=core2 -mtune=core2 -O3 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.5/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=core2 -mtune=core2 -O3 -pipe" DISTDIR="/usr/portage/distfiles" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://gentoo.osuosl.org/ ftp://mirror.iawnet.sandia.gov/pub/gentoo/ ftp://ftp.ucsb.edu/pub/mirrors/linux/gentoo/ http://ftp.ucsb.edu/pub/mirrors/linux/gentoo/ http://mirror.usu.edu/mirrors/gentoo/ http://gentoo.mirrors.easynews.com/linux/gentoo/ " LANG="en_US.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j5" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/var/lib/layman/last-hope /usr/local/portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="X a52 aac acl acpi alsa amd64 berkdb bluetooth branding bzip2 cairo cdda cdr cli consolekit cracklib crypt cups cxx dbus dri dts dvd dvdr emboss encode exif fam firefox flac fortran gdbm gif gpm gtk iconv ipv6 jpeg lcms ldap libnotify mad mmx mng modules mp3 mp4 mpeg mudflap multilib ncurses nls nptl ogg opengl openmp pam pango pcre pdf png policykit ppds qt3support qt4 readline sdl session spell sse sse2 ssl startup-notification svg tcpd tiff truetype udev udisks unicode upower usb vorbis wxwidgets x264 xcb xml xv xvid zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="actions alias auth_basic auth_digest authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" FOO2ZJS_DEVICES="hp1020" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3 pypy2_0" RUBY_TARGETS="ruby19 ruby18" USERLAND="GNU" VIDEO_CARDS="nvidia" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" USE_PYTHON="2.7 3.3 2.7-pypy-2.0" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS ================================================================= Package Settings ================================================================= dev-util/nvidia-cuda-sdk-5.0.35-r1 was built with the following: USE="cuda doc examples (multilib) -debug -opencl" ABI_X86="64"
Was going to attach this but then remembered it would only be one line. Output of emerge -pqv '=dev-util/nvidia-cuda-sdk-5.0.35-r1::gentoo': [ebuild R ] dev-util/nvidia-cuda-sdk-5.0.35-r1 USE="cuda doc examples -debug -opencl"
Please attach the entire build log to this bug report.
Created attachment 367404 [details] build.log
Derp, I knew I was forgetting something.
which dev-util/nvidia-cuda-toolkit are you using?
Looks like 5.5.22: [ebuild R ] dev-util/nvidia-cuda-toolkit-5.5.22:0/5.5.22 USE="debugger doc profiler -eclipse" 0 kB
Could you please try again with =2 in your CXXFLAGS?
-O2 I meant
Yeah, I was wondering what =2 was going to do ;). Same error. I'll upload the build.log file again, but it looks like it's exactly the same error (with -O2 on all the compile lines instead of -O3).
Created attachment 367588 [details] Build log file with -O2 compilation.
Which nvidia card do you have?
Not really sure how that affects it, but it's a GeForce GT 640 (GK107).
(In reply to Alex Orange from comment #12) > Not really sure how that affects it, but it's a GeForce GT 640 (GK107). Don't know, but I am out of ideas what the issue could be.
Does it work with 5.5* ?
I fixed the dependency logic. Please test again. + 14 Jan 2014; Justin Lecher <jlec@gentoo.org> + nvidia-cuda-sdk-5.0.35-r1.ebuild, nvidia-cuda-sdk-5.5.22.ebuild: + Depend on equal version of toolkit, #497500 +
I agree, this fixes the problem for me. I just installed nvidia-cuda-sdk-5.0.35-r1 (had to force the version since it now wants to update to 5.5) and it worked. I'll test 5.5 just to make sure, but I'm assuming at the moment that the problem is fixed. Thank you.
And 5.5 works just as well.
