Bug 493060 – dev-python/matplotlib-1.3.0: /usr/lib64/python2.7/site-packages/sphinx/ext/graphviz.py", line 221: No such file or directory: '.../work/matplotlib-1.3.0-python2_7/doc/build/html/_images/inheritance-295948fc417e1c4d

• Status: RESOLVED WORKSFORME
• Product: Gentoo Linux

[Description Juergen Rose 2013-12-01 20:10:50 UTC]

'emerge matplotlib' fails with:
...
checking consistency... /var/tmp/portage/dev-python/matplotlib-1.3.0/work/matplotlib-1.3.0-python2_7/doc/devel/gitwash/dot2_dot3.rst:: WARNING: document isn't included in any toctree
/var/tmp/portage/dev-python/matplotlib-1.3.0/work/matplotlib-1.3.0-python2_7/doc/examples/index.rst:: WARNING: document isn't included in any toctree
done
preparing documents... done
writing output... [  0%] api/afm_api
writing output... [  0%] api/animation_api
writing output... [  0%] api/api_changes
writing output... [  0%] api/artist_api

Exception occurred:
  File "/usr/lib64/python2.7/site-packages/sphinx/ext/graphviz.py", line 221, in render_dot_html
    mapfile = open(outfn + '.map', 'rb')
IOError: [Errno 2] No such file or directory: '/var/tmp/portage/dev-python/matplotlib-1.3.0/work/matplotlib-1.3.0-python2_7/doc/build/html/_images/inheritance-295948fc417e1c4daf58c8727979868e51721695.png.map'
The full traceback has been saved in /var/tmp/portage/dev-python/matplotlib-1.3.0/temp/python2.7/sphinx-err-UdKmdw.log, if you want to report the issue to the developers.
Please also report this if it was a user error, so that a better error message can be provided next time.
Either send bugs to the mailing list at <http://groups.google.com/group/sphinx-dev/>,
or report them in the tracker at <http://bitbucket.org/birkenfeld/sphinx/issues/>. Thanks!
Building HTML failed.
 * ERROR: dev-python/matplotlib-1.3.0::gentoo failed (compile phase):


Reproducible: Always




root@caiman:/root(28)# emerge --info '=dev-python/matplotlib-1.3.0::gentoo'
Portage 2.2.7 (default/linux/amd64/13.0, gcc-4.8.2, glibc-2.17, 3.12.0-gentoo x86_64)
=================================================================
                        System Settings
=================================================================
System uname: Linux-3.12.0-gentoo-x86_64-AMD_Phenom-tm-_II_X6_1090T_Processor-with-gentoo-2.2
KiB Mem:    16178068 total,   3239592 free
KiB Swap:  100663280 total, 100631228 free
Timestamp of tree: Sun, 01 Dec 2013 16:30:02 +0000
ld GNU ld (GNU Binutils) 2.23.2
app-shells/bash:          4.2_p45
dev-java/java-config:     2.2.0
dev-lang/python:          2.7.5-r4, 3.2.5-r3, 3.3.3
dev-util/cmake:           2.8.12.1-r1
dev-util/pkgconfig:       0.28
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.12.4
sys-apps/sandbox:         2.6-r1
sys-devel/autoconf:       2.13, 2.69
sys-devel/automake:       1.10.3, 1.11.6, 1.12.6, 1.13.4, 1.14
sys-devel/binutils:       2.23.2
sys-devel/gcc:            4.7.3-r1, 4.8.2
sys-devel/gcc-config:     1.8
sys-devel/libtool:        2.4.2
sys-devel/make:           4.0
sys-kernel/linux-headers: 3.12 (virtual/os-headers)
sys-libs/glibc:           2.17
Repositories: gentoo x11 science sunrise x-portage g-cpan g-octave
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA PUEL Intel-SDP dlj-1.1 skype-eula skype-4.0.0.7-copyright googleearth AdobeFlash-11.x cadsoft Oracle-BCLA-JavaSE MakeMKV-EULA NVIDIA-CUDA Nero-AAC-EULA GIMPS"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=amdfam10 -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.3/ext-active/ /etc/php/apache2-php5.5/ext-active/ /etc/php/cgi-php5.3/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cli-php5.3/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=amdfam10 -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j7"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage_caiman"
PORTDIR_OVERLAY="/var/lib/layman/x11 /var/lib/layman/science /var/lib/layman/sunrise /usr/local/portage /var/lib/cpan /var/lib/g-octave"
USE="3dnow 3dnowext 64bit R X Xaw3d a52 aac acl acpi admin afs alsa amd64 ao apache2 apng applet archive armadillo arpack asf aspell atlas audacious audiofile automap automount bash-completion berkdb blas blast bluetooth bluray boost bzip2 cairo cdda cddb cdf cdio cdparanoia cdr cgi chm cli cmake consolekit cracklib crypt css cups curl cxx daap db dbi dbm dbus declarative designer devhelp device-mapper dga dia dirac djvu doc dot dri ds2490 ds9097 ds9097u dts dv dvb dvd dvdr dvi dynamicplugin eds egl elf emacs emboss emf encode epiphany evo examples exif expat extensions extra extras faac faad ffmpeg fftw firefox fits flac fltk fontconfig foomaticdb fortran fortran95 fpm fpx fuse g3dvl gcj gd gdal gdbm gdu gedit geoip geolocation geos gfortran gif gimp git glade glib glpk gml gmp gnome gnome-keyring gnome-print gnuplot gnutls gold gphoto2 gpm grammar graphics graphtft graphviz grass gsl gsm gstreamer gtk gtk3 gudev guile hddtemp hdf hdf5 hdri html http httpd hvm hwdb iconv icq icu id3 id3tag ide imagemagick imap inotify introspection ipod ipv6 irda ithreads jabber jadetex java java6 jbig john jpeg jpeg2k kate kdepim kdrive kerberos keymap kpathsea kvm ladspa lame lapack latex lcms ldap lensfun libffi libkms libnotify libsamplerate live lm_sensors lua lzma lzo mad mail maildir mapnik math matroska media-library mercurial mikmod mkl mmx mmxext mng mod modules mono motif mozilla mp3 mp4 mpeg mpi mplayer mtp mudflap multilib multimedia musepack musicbrainz mysql mysqli nautilus ncurses netcdf netpbm network networking networkmanager nfs nls nntp nptl nsplugin ntfs ntp numpy obex objc ocaml ocr octave odbc ofa ogdi ogg openexr opengl openmp openvg pam pango pcre pda pdf perl plasma plotutils plugins png podcast policykit portaudio posix postgres postscript ppds preview-latex proj projectm projectx pstricks pulseaudio python python-bindings q16 q32 qemu qhull qt3support qt4 quicktime raw readline real reiserfs reports rhythmbox rle romio rpc rrdcgi rrdtool sage samba sasl schroedinger science sdk sdl secure-delete semantic-desktop server session shout sip slang slp smart smbclient smp sms sndfile snmp soap sockets sound soup sox speex spell sql sqlite sse sse2 ssl stlport subtitles subversion sudo suexec svg svm swig systemd szip t1lib tcl tcpd tex tex4ht texmacs tgif theora thesaurus threads thunderbird tidy tiff tk toolbar tools truetype udev udisks unicode usb userlocales utempter v4l vaapi vala valgrind vdpau video virt-network virtualbox visio vorbis vpx wav webdav webdav-serf webkit wmf wxwidgets x264 xa xattr xcb xemacs xetex xext xft xine xml xmlreader xmlrpc xpm xv xvid xvmc yaml youtube zlib zvbi" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_core authn_dbm authn_default authn_file authz_core authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info lbmethod_byrequests log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif slotmem_shm so socache_shmcb speling status unique_id unixd userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="canon fuji ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CURL_SSL="nss" DRACUT_MODULES="caps lvm mdraid syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev void" KERNEL="linux" LCD_DEVICES="cfontz hd44780 mtxorb ncurses X lcd2usb lcdlinux png usblcd" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="de fr ru" NETBEANS_MODULES="apisupport cnd dlight enterprise ergonomics groovy gsf harness ide identity j2ee java mobility nb php profiler ruby websvccommon xml" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-3" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" QEMU_SOFTMMU_TARGETS="arm i386 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby19 ruby18" USERLAND="GNU" VIDEO_CARDS="radeon displaylink" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, SYNC, USE_PYTHON

=================================================================
                        Package Settings
=================================================================

dev-python/matplotlib-1.3.0 was built with the following:
USE="cairo doc examples fltk gtk gtk3 latex qt4 tk wxwidgets -excel -test" PYTHON_TARGETS="python2_7 python3_2 -python2_6 -python3_3"
CFLAGS="-march=amdfam10 -O2 -pipe -fno-strict-aliasing"
CXXFLAGS="-march=amdfam10 -O2 -pipe -fno-strict-aliasing"



root@caiman:/root(29)# emerge -pqv '=dev-python/matplotlib-1.3.0::gentoo'
[ebuild   R   ] dev-python/matplotlib-1.3.0  USE="cairo doc examples fltk gtk gtk3 latex qt4 tk wxwidgets -excel {-test}" PYTHON_TARGETS="python2_7 python3_3* -python2_6 -python3_2*"

[Comment 1 Juergen Rose 2013-12-01 20:16:14 UTC]

Created attachment 364376 [details]
build.log.bz2

[Comment 2 Juergen Rose 2013-12-02 14:33:53 UTC]

'USE=-doc emerge -v1 matplotlib' worked.

[Comment 3 Yixun Lan 2013-12-09 06:30:37 UTC]

I can confirm, same problem here

$ cat python2.7/sphinx-err-iXo_a5.log 
# Sphinx version: 1.1.3
# Python version: 2.7.6
# Docutils version: 0.10 release
# Jinja2 version: 2.7.1
Traceback (most recent call last):
  File "/usr/lib64/python2.7/site-packages/sphinx/cmdline.py", line 189, in main
    app.build(force_all, filenames)
  File "/usr/lib64/python2.7/site-packages/sphinx/application.py", line 204, in build
    self.builder.build_update()
  File "/usr/lib64/python2.7/site-packages/sphinx/builders/__init__.py", line 196, in build_update
    'out of date' % len(to_build))
  File "/usr/lib64/python2.7/site-packages/sphinx/builders/__init__.py", line 252, in build
    self.write(docnames, list(updated_docnames), method)
  File "/usr/lib64/python2.7/site-packages/sphinx/builders/__init__.py", line 292, in write
    self.write_doc(docname, doctree)
  File "/usr/lib64/python2.7/site-packages/sphinx/builders/html.py", line 419, in write_doc
    self.docwriter.write(doctree, destination)
  File "/usr/lib64/python2.7/site-packages/docutils/writers/__init__.py", line 80, in write
    self.translate()
  File "/usr/lib64/python2.7/site-packages/sphinx/writers/html.py", line 38, in translate
    self.document.walkabout(visitor)
  File "/usr/lib64/python2.7/site-packages/docutils/nodes.py", line 174, in walkabout
    if child.walkabout(visitor):
  File "/usr/lib64/python2.7/site-packages/docutils/nodes.py", line 174, in walkabout
    if child.walkabout(visitor):
  File "/usr/lib64/python2.7/site-packages/docutils/nodes.py", line 166, in walkabout
    visitor.dispatch_visit(self)
  File "/usr/lib64/python2.7/site-packages/docutils/nodes.py", line 1627, in dispatch_visit
    return method(node)
  File "/usr/lib64/python2.7/site-packages/sphinx/ext/inheritance_diagram.py", line 341, in html_visit_inheritance_diagram
    alt='Inheritance diagram of ' + node['content'])
  File "/usr/lib64/python2.7/site-packages/sphinx/ext/graphviz.py", line 221, in render_dot_html
    mapfile = open(outfn + '.map', 'rb')
IOError: [Errno 2] No such file or directory: '/var/tmp/portage/dev-python/matplotlib-1.3.0/work/matplotlib-1.3.0-python2_7/doc/build/html/_images/inheritance-9db019d05936527aa61ed1ca7fd24970a4cb73eb.png.map'

[Comment 4 Justin Lecher (RETIRED) 2013-12-12 11:56:22 UTC]

I cannot reproduce this with matplotlib-1.3.1. Fixed for you too?

[Comment 5 Yixun Lan 2013-12-12 15:46:50 UTC]

I haven't found the 1.3.1 after sync.. just pushed this version into official portage tree? and haven't hit into mirror server?

but, never mind, I just bump it in my local overlay. tested still have the same problem.

is that possible the issue of sphinx? dev-python/sphinx-1.1.3-r7 installed here

----------------------8<-------------------

writing output... [  0%] api/afm_api
writing output... [  0%] api/animation_api
writing output... [  0%] api/api_changes
writing output... [  0%] api/artist_api

Exception occurred:
  File "/usr/lib64/python2.7/site-packages/sphinx/ext/graphviz.py", line 221, in
 render_dot_html
    mapfile = open(outfn + '.map', 'rb')
IOError: [Errno 2] No such file or directory: '/var/tmp/portage/dev-python/matpl
otlib-1.3.1/work/matplotlib-1.3.1-python2_7/doc/build/html/_images/inheritance-2
709e06526c844b0a3604c3e56945c0c6c35b01a.png.map'
The full traceback has been saved in /var/tmp/portage/dev-python/matplotlib-1.3.
1/temp/python2.7/sphinx-err-7dHc3N.log, if you want to report the issue to the d
evelopers.
Please also report this if it was a user error, so that a better error message c
an be provided next time.
Either send bugs to the mailing list at <http://groups.google.com/group/sphinx-d
ev/>,
or report them in the tracker at <http://bitbucket.org/birkenfeld/sphinx/issues/
>. Thanks!

[Comment 6 Justin Lecher (RETIRED) 2013-12-12 19:40:37 UTC]

could you please attach
/var/tmp/portage/dev-python/matplotlib-1.3.1/temp/python2.7/sphinx-err-*.log
?

Which USE do you have for sphinx?

[Comment 7 Yixun Lan 2013-12-13 06:27:18 UTC]

previous sphinx installed version was 1.1.3-r7, with USE="doc -latex -test"

output from eix:
[U] dev-python/sphinx
     Available versions:  1.1.3-r3 1.1.3-r5 1.1.3-r6 1.1.3-r7 (~)1.2 {doc latex test PYTHON_TARGETS="pypy2_0 python2_6 python2_7 python3_2 python3_3"}
     Installed versions:  1.1.3-r7(08:12:44 12/07/13)(doc -latex -test PYTHON_TARGETS="python2_7 python3_2 -pypy2_0 -python2_6 -python3_3")

after I upgrade to version sphinx-1.2, the problem is gone (can't re-produce)

[Comment 8 Yixun Lan 2013-12-13 06:31:07 UTC]

oh, now even after re-install sphinx-1.1.3-r7, matplotlib-1.3.1 build successfully..

[Comment 9 Justin Lecher (RETIRED) 2013-12-13 07:20:20 UTC]

(In reply to Dennis 'dlan' Lan from comment #8)
> oh, now even after re-install sphinx-1.1.3-r7, matplotlib-1.3.1 build
> successfully..

I suspect this. But still I don't have any clue what is wrong here. Lets close this bug and wait if it comes up again.