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Bug 489518 - =dev-python/alembic-0.6.0 with =dev-python/sqlalchemy-0.8.2[test] - fails tests
Summary: =dev-python/alembic-0.6.0 with =dev-python/sqlalchemy-0.8.2[test] - fails tests
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: [OLD] Development (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Jan Matějka (RETIRED)
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2013-10-27 00:06 UTC by eroen
Modified: 2013-10-31 05:19 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log showing failure with sqlalchemy[test] (build.log.fail,33.91 KB, text/plain)
2013-10-27 00:06 UTC, eroen
Details
build.log showing success with sqlalchemy[-test] (build.log.success,115.09 KB, text/plain)
2013-10-27 00:07 UTC, eroen
Details
CONTENTS diff for sqlalchemy[test] and sqlalchemy[-test] (contentdiff,150.97 KB, text/plain)
2013-10-27 00:10 UTC, eroen
Details
cleaner diff (contentdiff.clean,25.24 KB, text/plain)
2013-10-27 00:14 UTC, eroen
Details

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Description eroen 2013-10-27 00:06:13 UTC
Created attachment 362024 [details]
build.log showing failure with sqlalchemy[test]

If dev-python/sqlalchemy is built with FEATURES=test (and test-fail-pass due to bug 489488), 4 of dev-python/alembic 's tests that always fail are not skipped like they normally are. (skipping is based on an ImportException).

From alembic build log with dev-python/sqlalchemy[test]:

E.....................................ES..................................................................................................................................................../var/tmp/portage/dev-python/alembic-0.6.0/work/alembic-0.6.0-python3_2/lib/alembic/util.py:269: UserWarning: Argument 'name' is now named 'new_column_name' for function 'alter_column'
  (oldname, newname, fn.__name__))
/var/tmp/portage/dev-python/alembic-0.6.0/work/alembic-0.6.0-python3_2/lib/alembic/util.py:269: UserWarning: Argument 'tablename' is now named 'table_name' for function 'drop_index'
  (oldname, newname, fn.__name__))
/var/tmp/portage/dev-python/alembic-0.6.0/work/alembic-0.6.0-python3_2/lib/alembic/util.py:269: UserWarning: Argument 'type' is now named 'type_' for function 'drop_constraint'
  (oldname, newname, fn.__name__))
.......................EE.........................../var/tmp/portage/dev-python/alembic-0.6.0/work/alembic-0.6.0-python3_2/lib/alembic/util.py:163: UserWarning: Skipping unsupported ALTER for creation of implicit constraint
  warnings.warn(msg)
....................
[[[ backtraces go here ]]]
----------------------------------------------------------------------
Ran 255 tests in 1.558s

FAILED (SKIP=1, errors=4)

From alembic build log with dev-python/sqlalchemy[-test]:

S.....................................SS..................................................................................................................................................../var/tmp/portage/dev-python/alembic-0.6.0/work/alembic-0.6.0-python3_2/lib/alembic/util.py:269: UserWarning: Argument 'name' is now named 'new_column_name' for function 'alter_column'
  (oldname, newname, fn.__name__))
/var/tmp/portage/dev-python/alembic-0.6.0/work/alembic-0.6.0-python3_2/lib/alembic/util.py:269: UserWarning: Argument 'tablename' is now named 'table_name' for function 'drop_index'
  (oldname, newname, fn.__name__))
/var/tmp/portage/dev-python/alembic-0.6.0/work/alembic-0.6.0-python3_2/lib/alembic/util.py:269: UserWarning: Argument 'type' is now named 'type_' for function 'drop_constraint'
  (oldname, newname, fn.__name__))
.......................SS.........................../var/tmp/portage/dev-python/alembic-0.6.0/work/alembic-0.6.0-python3_2/lib/alembic/util.py:163: UserWarning: Skipping unsupported ALTER for creation of implicit constraint
  warnings.warn(msg)
....................
----------------------------------------------------------------------
Ran 255 tests in 1.529s

OK (SKIP=5)


eroen@falcon ~/bugs/alembic-2013-10-27 $ emerge --info '=dev-python/alembic-0.6.0::gentoo' '=dev-python/sqlalchemy-0.8.2::gentoo'
Portage 2.2.7 (default/linux/amd64/13.0, gcc-4.8.1, glibc-2.17, 3.10.7-e6-falcon0+ x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-3.10.7-e6-falcon0+-x86_64-Intel-R-_Core-TM-2_Quad_CPU_@_2.40GHz-with-gentoo-2.2
KiB Mem:     4038272 total,    443408 free
KiB Swap:    8388604 total,   7419192 free
Timestamp of tree: Thu, 24 Oct 2013 20:45:01 +0000
ld GNU ld (GNU Binutils) 2.23.2
distcc 3.1 x86_64-pc-linux-gnu [disabled]
ccache version 3.1.9 [disabled]
app-shells/bash:          4.2_p45
dev-java/java-config:     2.2.0
dev-lang/python:          2.7.5-r3, 3.2.5-r3, 3.3.2-r2
dev-util/ccache:          3.1.9-r3
dev-util/cmake:           2.8.12
dev-util/pkgconfig:       0.28
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.12.3
sys-apps/sandbox:         2.6-r1
sys-devel/autoconf:       2.13, 2.69
sys-devel/automake:       1.9.6-r3, 1.11.6, 1.12.6, 1.13.4, 1.14
sys-devel/binutils:       2.23.2
sys-devel/gcc:            4.5.4, 4.6.4, 4.7.3-r1, 4.8.1-r1
sys-devel/gcc-config:     1.8
sys-devel/libtool:        2.4.2
sys-devel/make:           3.82-r4
sys-kernel/linux-headers: 3.11 (virtual/os-headers)
sys-libs/glibc:           2.17
Repositories: gentoo gamerlay eroen
ACCEPT_KEYWORDS="amd64 ~amd64 ~x86"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=core2 -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/themes/oxygen-gtk/gtk-2.0"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=core2 -O2 -pipe"
DISTDIR="/var/distfiles"
EMERGE_DEFAULT_OPTS="--jobs 3 --nospinner --quiet-build --with-bdeps=y --binpkg-respect-use y"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="/var/temdist/ /var/distfiles-occam/ http://mirrors.eu.kernel.org/gentoo/ http://mirrors.kernel.org/gentoo/ http://distfiles.gentoo.org http://www.ibiblio.org/pub/Linux/distributions/gentoo"
LANG="en_GB.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j4"
PKGDIR="/var/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/gamerlay /var/lib/layman/eroen"
SYNC="rsync://mirrors.eu.kernel.org/gentoo-portage/"
USE="X a52 aac aacs accessibility acl adns alsa amd64 ao atm berkdb bluray bs2b bzip2 cairo calendar canberra caps cdda cdio cdparanoia cdr cli corefonts cracklib crypt css cue cups curl cxx dbus dia dirac djvu dmapi dri dts dvd dvdnav dvi ebook eigen exif faac fam fbcondecor ffmpeg fftw fits flac fontconfig fortran fuse g3dvl gcrypt gd gdbm gif gimp git gmp gnutls gold gstreamer hdri highlight iconv icu id3tag idn imagemagick inotify iptc ipv6 jpeg jpeg2k kde kvm lcms lensfun libnotify loop-aes lqr lzma lzo mad man matroska midi mikmod mkv mms mmx mmxext mng mod modplug modules mp3 mp4 mpeg mpeg2 mpeg4 mpeg4pt2 mplayer mtp mudflap multilib musepack ncurses netlink nfs nls nouveau nptl ocr offensive ogg openal opencl openexr opengl opengtl openmp openvg optimization osmesa pam pango pcre pdf png pnm portaudio postscript pulseaudio qalculate qemu qt3support qt4 rar raw rdesktop readline real rtmp samba scanner schroedinger security session smp sndfile socks5 speex spice sse sse2 sse3 ssl ssse3 strong-optimization svg tbb tcpd theora threads tiff timidity tls truetype udev uml unicode usb usbredir v4l v4l2 vdpau virtualbox vnc vorbis wacom wavpack webp wmf x264 xattr xcb xcomposite xetex xfs xft xine xinerama xorg xps xrandr xv xvid xvmc zlib" ABI_X86="32 64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CURL_SSL="openssl" DRACUT_MODULES="biosdevname caps crypt crypt-gpg dash dmraid lvm mdraid syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" GRUB_PLATFORMS="efi-64 pc qemu" INPUT_DEVICES="evdev keyboard mouse synaptics wacom" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="nlpsolver presenter-console presenter-minimizer" LINGUAS="en en_US en_GB nb no nb_NO" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_2 python3_3" RUBY_TARGETS="ruby20" SANE_BACKENDS="net plustek pnm" USERLAND="GNU" VIDEO_CARDS="nouveau nvidia vesa" XFCE_PLUGINS="menu" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
USE_PYTHON="2.7 3.2 3.3"
Unset:  CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

=================================================================
                        Package Settings
=================================================================

dev-python/alembic-0.6.0 was built with the following:
USE="test -doc" PYTHON_TARGETS="python2_7 python3_2 python3_3 -python2_6"


dev-python/sqlalchemy-0.8.2 was built with the following:
USE="sqlite test -doc -examples" PYTHON_TARGETS="python2_7 python3_2 python3_3 -pypy2_0 -python2_6"

eroen@falcon ~/bugs/alembic-2013-10-27 $ emerge -pqv '=dev-python/alembic-0.6.0::gentoo' '=dev-python/sqlalchemy-0.8.2::gentoo'
[ebuild   R   ] dev-python/sqlalchemy-0.8.2  USE="sqlite -doc -examples {-test*}" PYTHON_TARGETS="python2_7 python3_2 python3_3 -pypy2_0 -python2_6" 
[ebuild   R   ] dev-python/alembic-0.6.0  USE="-doc {-test*}" PYTHON_TARGETS="python2_7 python3_2 python3_3 -python2_6"
Comment 1 eroen 2013-10-27 00:07:40 UTC
Created attachment 362026 [details]
build.log showing success with sqlalchemy[-test]
Comment 2 eroen 2013-10-27 00:10:24 UTC
Created attachment 362028 [details]
CONTENTS diff for sqlalchemy[test] and sqlalchemy[-test]

diff -u <(cut -d ' ' -f '-3' sqlalchemy.CONTENTS.fail | sort) <(cut -d ' ' -f '-3' sqlalchemy.CONTENTS.success | sort)
Comment 3 eroen 2013-10-27 00:14:52 UTC
Created attachment 362030 [details]
cleaner diff

iff -u <(cut -d ' ' -f '-3' sqlalchemy.CONTENTS.fail | grep -v '__pycache__' | sort) <(cut -d ' ' -f '-3' sqlalchemy.CONTENTS.success | grep -v __pycache__ | sort)
Comment 4 Jan Matějka (RETIRED) gentoo-dev 2013-10-31 00:59:24 UTC
can't reproduce.
Comment 5 Jan Matějka (RETIRED) gentoo-dev 2013-10-31 02:39:23 UTC
ok, I see it now - forgot the +test on sqlalchemy
Comment 6 Jan Matějka (RETIRED) gentoo-dev 2013-10-31 03:53:48 UTC
The problem here is that sqlalchemy installed with +test install compared to -test looks like

--- /usr/lib64/python3.2/site-packages/sqlalchemy/dialects/postgresql/psycopg2.py 2013-10-31 04:51:03.000000000 +0100
+++ /usr/lib64/python3.2/site-packages/sqlalchemy/dialects/postgresql/psycopg2.py.new     2013-10-31 04:53:56.351000000 +0100
@@ -365,7 +365,7 @@
 
     @classmethod
     def dbapi(cls):
-        import psycopg2
+        from . import psycopg2
         return psycopg2
 
     @util.memoized_property

but I have no idea what is causing this.
Comment 7 Jan Matějka (RETIRED) gentoo-dev 2013-10-31 03:58:19 UTC
I have tracked the test failure to this specific line but I think there is a general problem with different files being installed depending on the test use flag resulting in broken installation of sqlalchemy on python 3, for postgresql dialect at least. See comment 3
Comment 8 Mike Gilbert gentoo-dev 2013-10-31 04:52:28 UTC
+  31 Oct 2013; Mike Gilbert <floppym@gentoo.org> sqlalchemy-0.8.2.ebuild:
+  Rearrange python_test to avoid calling 2to3 on source tree twice, bug 489518.
+  As a side effect, we can disable in-source builds.