Created attachment 360772 [details] build.log >>> Emerging (2 of 2) sci-libs/atlas-3.10.1-r1 from science * Fetching files in the background. To view fetch progress, run * `tail -f /var/log/emerge-fetch.log` in another terminal. * atlas3.10.1.tar.bz2 SHA256 SHA512 WHIRLPOOL size ;-) ... [ ok ] * lapack-3.4.2.tgz SHA256 SHA512 WHIRLPOOL size ;-) ... [ ok ] * Using following Fortran compiler: * F77: x86_64-pc-linux-gnu-gfortran * FC: x86_64-pc-linux-gnu-gfortran >>> Unpacking source... >>> Unpacking atlas3.10.1.tar.bz2 to /mnt/1TB/var/tmp/portage/sci-libs/atlas-3.10.1-r1/work >>> Unpacking lapack-3.4.2.tgz to /mnt/1TB/var/tmp/portage/sci-libs/atlas-3.10.1-r1/work >>> Source unpacked in /mnt/1TB/var/tmp/portage/sci-libs/atlas-3.10.1-r1/work >>> Preparing source in /mnt/1TB/var/tmp/portage/sci-libs/atlas-3.10.1-r1/work/ATLAS ... * Applying atlas-3.10.0-x32-support.patch ... [ ok ] >>> Source prepared. >>> Configuring source in /mnt/1TB/var/tmp/portage/sci-libs/atlas-3.10.1-r1/work/ATLAS ... x86_64-pc-linux-gnu-gcc -I/mnt/1TB/var/tmp/portage/sci-libs/atlas-3.10.1-r1/work/ATLAS//CONFIG/include -g -w -c /mnt/1TB/var/tmp/portage/sci-libs/atlas-3.10.1-r1/work/ATLAS//CONFIG/src/atlconf_misc.c x86_64-pc-linux-gnu-gcc -I/mnt/1TB/var/tmp/portage/sci-libs/atlas-3.10.1-r1/work/ATLAS//CONFIG/include -g -w -o xconfig /mnt/1TB/var/tmp/portage/sci-libs/atlas-3.10.1-r1/work/ATLAS//CONFIG/src/config.c atlconf_misc.o ./xconfig -d s /mnt/1TB/var/tmp/portage/sci-libs/atlas-3.10.1-r1/work/ATLAS/ -d b /mnt/1TB/var/tmp/portage/sci-libs/atlas-3.10.1-r1/work/ATLAS_shared -D c -DWALL -C acg 'gcc' -F acg '-O2 -pipe -maes -mpclmul -mpopcnt -march=native' -Ss pmake '$(MAKE) -j3' -t -1 -Si omp 0 -b 64 -C if '/usr/bin/x86_64-pc-linux-gnu-gfortran' -F if '-O2 -pipe' -Si latune 1 -Si lapackref 1 -Fa alg -fPIC OS configured as Linux (1) Assembly configured as GAS_x8664 (2) Vector ISA Extension configured as AVX (5,480) Architecture configured as Corei2 (26) Clock rate configured as 3360Mhz Maximum number of threads configured as 2 xarchinfo_linux: /mnt/1TB/var/tmp/portage/sci-libs/atlas-3.10.1-r1/work/ATLAS//CONFIG/src/backend/archinfo_linux.c:385: ProbeThrottle: Assertion `res' failed. /bin/sh: line 1: 8739 Aborted (core dumped) ./xarchinfo_linux -t > config0.out make[3]: *** [atlas_run] Error 134 make[2]: *** [IRunArchInfo_linux] Error 2 Cannot detect CPU throttling.
# gdb /mnt/1TB/var/tmp/portage/sci-libs/atlas-3.10.1-r1/work/ATLAS_shared/xarchinfo_linux core.xarchinfo_linux.12419 GNU gdb (Gentoo 7.6.1 p1) 7.6.1 Copyright (C) 2013 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html> This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Type "show copying" and "show warranty" for details. This GDB was configured as "x86_64-pc-linux-gnu". For bug reporting instructions, please see: <http://bugs.gentoo.org/>... Reading symbols from /mnt/1TB/var/tmp/portage/sci-libs/atlas-3.10.1-r1/work/ATLAS_shared/xarchinfo_linux...done. [New LWP 12419] warning: Could not load shared library symbols for linux-vdso.so.1. Do you need "set solib-search-path" or "set sysroot"? Core was generated by `./xarchinfo_linux -t'. Program terminated with signal 6, Aborted. #0 0x00007f405775e535 in raise () from /lib64/libc.so.6 (gdb) where #0 0x00007f405775e535 in raise () from /lib64/libc.so.6 #1 0x00007f405775f9b8 in abort () from /lib64/libc.so.6 #2 0x00007f40577575f2 in __assert_fail_base () from /lib64/libc.so.6 #3 0x00007f40577576a2 in __assert_fail () from /lib64/libc.so.6 #4 0x000000000040269a in ProbeThrottle () at /mnt/1TB/var/tmp/portage/sci-libs/atlas-3.10.1-r1/work/ATLAS//CONFIG/src/backend/archinfo_linux.c:385 #5 0x0000000000402819 in main (nargs=2, args=0x7fff0b5f6808) at /mnt/1TB/var/tmp/portage/sci-libs/atlas-3.10.1-r1/work/ATLAS//CONFIG/src/backend/archinfo_linux.c:418 (gdb) bt full #0 0x00007f405775e535 in raise () from /lib64/libc.so.6 No symbol table info available. #1 0x00007f405775f9b8 in abort () from /lib64/libc.so.6 No symbol table info available. #2 0x00007f40577575f2 in __assert_fail_base () from /lib64/libc.so.6 No symbol table info available. #3 0x00007f40577576a2 in __assert_fail () from /lib64/libc.so.6 No symbol table info available. #4 0x000000000040269a in ProbeThrottle () at /mnt/1TB/var/tmp/portage/sci-libs/atlas-3.10.1-r1/work/ATLAS//CONFIG/src/backend/archinfo_linux.c:385 iret = 0 imax = 3500000 imin = 800000 icur = 0 res = 0x0 __PRETTY_FUNCTION__ = "ProbeThrottle" #5 0x0000000000402819 in main (nargs=2, args=0x7fff0b5f6808) at /mnt/1TB/var/tmp/portage/sci-libs/atlas-3.10.1-r1/work/ATLAS//CONFIG/src/backend/archinfo_linux.c:418 flags = 128 CacheLevel = 0 bits = 32767 sure = 0 arch = MACHOther (gdb)
Portage 2.2.7 (default/linux/amd64/13.0/no-multilib, gcc-4.7.3, glibc-2.17, 3.10.10-default-pciehp x86_64) ================================================================= System uname: Linux-3.10.10-default-pciehp-x86_64-Intel-R-_Core-TM-_i7-2640M_CPU_@_2.80GHz-with-gentoo-2.2 KiB Mem: 16368832 total, 167932 free KiB Swap: 4998972 total, 4998972 free Timestamp of tree: Sun, 13 Oct 2013 09:30:01 +0000 ld GNU ld (GNU Binutils) 2.23.2 app-shells/bash: 4.2_p45 dev-java/java-config: 2.2.0 dev-lang/python: 2.7.5-r2, 3.2.5-r2, 3.3.2-r2 dev-util/cmake: 2.8.11.2 dev-util/pkgconfig: 0.28 sys-apps/baselayout: 2.2 sys-apps/openrc: 0.12.2 sys-apps/sandbox: 2.6-r1 sys-devel/autoconf: 2.13, 2.69 sys-devel/automake: 1.11.6, 1.12.6, 1.14 sys-devel/binutils: 2.23.2 sys-devel/gcc: 4.6.4, 4.7.3, 4.8.1-r1 sys-devel/gcc-config: 1.8 sys-devel/libtool: 2.4.2 sys-devel/make: 3.82-r4 sys-kernel/linux-headers: 3.11 (virtual/os-headers) sys-libs/glibc: 2.17 Repositories: gentoo gentoo-haskell science x-portage x-layman ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* -@EULA dlj-1.1 sun-bcla-java-vm Oracle-BCLA-JavaSE IBM-J1.6 skype-eula Nero-EULA-US AdobeFlash-10.3 skype-4.0.0.7-copyright AdobeFlash-11.x" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -maes -mpclmul -mpopcnt -march=native" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/easy-rsa /usr/share/gnupg/qualified.txt /var/spool/torque" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.4/ext-active/ /etc/php/apache2-php5.5/ext-active/ /etc/php/cgi-php5.4/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cli-php5.4/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -pipe -maes -mpclmul -mpopcnt -march=native" DISTDIR="/mnt/1TB/usr/portage/distfiles" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news nostrip parallel-fetch preserve-libs protect-owned sandbox sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="rsync://ftp.fi.muni.cz/pub/linux/gentoo/ rsync://gentoo.mirror.dkm.cz/gentoo/ ftp://gentoo.mirror.web4u.cz/" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j3" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/mnt/1TB/var/tmp" PORTDIR="/mnt/1TB/usr/portage" PORTDIR_OVERLAY="/var/lib/layman/haskell /home/mmokrejs/proj/sci /usr/local/portage /var/lib/layman" USE="X acl acpi alsa amd64 amr apache apache2 avx berkdb bindist bluetooth bzip2 cairo cgi cli cracklib crypt cryptlib cups cxx dbus device-mapper dhcp dri emboss encode fax ffmpeg flac fontconfig fortran gd gdbm gimp gnutls gpm gtk gudev hal hpijs hwdb iconv id3tag innodb java jce jpeg jpg keymap ladspa lapack laptop lcms libnotify lm_sensors mad mmx modules mpi mpich2 mysql ncurses nfs nls nptl nptlonly nsplugin ntfsprogs ocr ogg opengl openmp pam parport pcre pdf perl php png ppds pppd python readline resolvconf scanner server session sndfile sqlite sse sse2 sse3 sse4_1 sse4_2 ssl ssse3 suexec svg syslog tcpd threads tiff tk truetype udev unicode usb vim-syntax wavpack wifi x11 xml xorg zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authz_host cgi cgid deflate dir env filter include info mime mime_magic remoteip setenvif status userdir vhost_alias rewrite" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en cs cz" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-4 php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_2" RUBY_TARGETS="ruby19 ruby18" USERLAND="GNU" VIDEO_CARDS="vesa vmware fbdev intel i915" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, SYNC, USE_PYTHON
No longer in sci overlay
