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Bug 483956 - dev-lang/perl-5.18.1: perl-cleaner: slot conflict with perl-5.16.3 required by virtual/perl-Test-Simple-0.980.0-r2 and perl-5.18.1 (installed) required by virtual/perl-Module-CoreList-2.970.0
Summary: dev-lang/perl-5.18.1: perl-cleaner: slot conflict with perl-5.16.3 required b...
Status: RESOLVED INVALID
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: [OLD] Development (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Perl team
URL:
Whiteboard:
Keywords:
Depends on: 479064
Blocks:
  Show dependency tree
 
Reported: 2013-09-06 08:09 UTC by Juergen Rose
Modified: 2013-09-11 07:23 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---

Attachments
/var/tmp/portage/dev-lang/perl-5.18.1/temp/build.log (build.log,51.23 KB, text/x-log)
2013-09-06 10:39 UTC, Juergen Rose 		Details
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Description Juergen Rose 2013-09-06 08:09:12 UTC 
Yesterday perl-5.18.1 was installed by 'emerge -uvDN world'. Today several tools are failing due to missing modules in @INC. But also 'perl-cleaner --reallyall' fails due to slot conflict:

root@wildcat:/usr/local/portage/media-libs/gegl(49)# perl-cleaner --reallyall
...
[ebuild   R    ] dev-perl/PDL-2.4.11  USE="badval doc fftw fortran gd gsl hdf netpbm pgplot plplot proj threads -pdl2" 0 kB

Total: 289 packages (9 upgrades, 1 downgrade, 6 new, 273 reinstalls), Size of downloads: 577 kB

!!! Multiple package instances within a single package slot have been pulled
!!! into the dependency graph, resulting in a slot conflict:

dev-lang/perl:0

  (dev-lang/perl-5.16.3::gentoo, ebuild scheduled for merge) pulled in by
    =dev-lang/perl-5.16* required by (virtual/perl-Test-Simple-0.980.0-r2::gentoo, installed)

  (dev-lang/perl-5.18.1::gentoo, installed) pulled in by
    =dev-lang/perl-5.18* required by (virtual/perl-Module-CoreList-2.970.0::gentoo, ebuild scheduled for merge)
    (and 10 more with the same problem)



I also tried 'perl-cleaner --reallyall -- --backtrack=30'. I cames until:
...
[ebuild   R    ] dev-perl/PDL-2.4.11  USE="badval doc fftw fortran gd gsl hdf netpbm pgplot plplot proj threads -pdl2" 0 kB

Total: 289 packages (10 upgrades, 6 new, 273 reinstalls), Size of downloads: 577 kB


>>> Verifying ebuild manifests

>>> Emerging (1 of 289) dev-perl/TermReadKey-2.300.200
 * TermReadKey-2.30.02.tar.gz SHA256 SHA512 WHIRLPOOL size ;-) ...                                                                                                    [ ok ]
>>> Unpacking source...
>>> Unpacking TermReadKey-2.30.02.tar.gz to /var/tmp/portage/dev-perl/TermReadKey-2.300.200/work
>>> Source unpacked in /var/tmp/portage/dev-perl/TermReadKey-2.300.200/work
>>> Preparing source in /var/tmp/portage/dev-perl/TermReadKey-2.300.200/work/TermReadKey-2.30.02 ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/dev-perl/TermReadKey-2.300.200/work/TermReadKey-2.30.02 ...
Can't locate Config.pm:   Permission denied.
BEGIN failed--compilation aborted.
 * Using ExtUtils::MakeMaker
 * perl Makefile.PL PREFIX=/usr INSTALLDIRS=vendor INSTALLMAN3DIR=none DESTDIR=/var/tmp/portage/dev-perl/TermReadKey-2.300.200/image/
Can't locate ExtUtils/MakeMaker.pm:   Permission denied at Makefile.PL line 4.

root@wildcat:/usr/local/portage/media-libs/gegl(54)# find /usr/lib/perl5/ -name Config.pm -ls
3943122    8 -r--r--r--   1 root     root         6065 Sep  6 04:41 /usr/lib/perl5/vendor_perl/5.18.1/x86_64-linux-thread-multi/Encode/Config.pm
4469379    4 -r--r--r--   1 root     root         1107 Aug 24 12:19 /usr/lib/perl5/vendor_perl/5.16.3/Module/Build/Config.pm
4604556   12 -r--r--r--   1 root     root        11395 Aug 24 12:16 /usr/lib/perl5/vendor_perl/5.16.3/HTTP/Config.pm
5643297    4 -r--r--r--   1 root     root          415 Aug 24 12:13 /usr/lib/perl5/vendor_perl/5.16.3/x86_64-linux-thread-multi/Tk/Config.pm
5516532    4 -r--r--r--   1 root     root         2833 Aug 24 12:45 /usr/lib/perl5/vendor_perl/5.16.3/x86_64-linux-thread-multi/OpenGL/Config.pm
6433292    4 -r--r--r--   1 root     root         1349 Aug 24 14:20 /usr/lib/perl5/vendor_perl/5.16.3/x86_64-linux-thread-multi/PDL/Config.pm
6433531    4 -r-xr-xr-x   1 root     root          331 Aug 24 14:20 /usr/lib/perl5/vendor_perl/5.16.3/x86_64-linux-thread-multi/PDL/Doc/Config.pm
4461054   40 -r--r--r--   1 root     root        39519 Aug 26 07:57 /usr/lib/perl5/vendor_perl/5.16.3/Log/Log4perl/Config.pm
6304792   12 -r-xr-xr-x   1 root     root         8400 Aug 24 14:12 /usr/lib/perl5/vendor_perl/5.16.3/Bio/Tools/Run/BlastPlus/Config.pm
6304788   16 -r--r--r--   1 root     root        15763 Aug 24 14:12 /usr/lib/perl5/vendor_perl/5.16.3/Bio/Tools/Run/BEDTools/Config.pm
6433247   20 -r--r--r--   1 root     root        18643 Aug 24 14:12 /usr/lib/perl5/vendor_perl/5.16.3/Bio/Tools/Run/Bowtie/Config.pm
6304790    8 -r-xr-xr-x   1 root     root         5040 Aug 24 14:12 /usr/lib/perl5/vendor_perl/5.16.3/Bio/Tools/Run/Samtools/Config.pm
6433251    8 -r-xr-xr-x   1 root     root         6142 Aug 24 14:12 /usr/lib/perl5/vendor_perl/5.16.3/Bio/Tools/Run/BWA/Config.pm
6433249   12 -r-xr-xr-x   1 root     root         9354 Aug 24 14:12 /usr/lib/perl5/vendor_perl/5.16.3/Bio/Tools/Run/Maq/Config.pm
6061141   32 -r--r--r--   1 root     root        29448 Aug 24 13:30 /usr/lib/perl5/vendor_perl/5.16.3/Video/DVDRip/Config.pm
4340443    4 -r--r--r--   1 root     root          567 Aug 24 12:14 /usr/lib/perl5/vendor_perl/5.16.3/ExtUtils/MakeMaker/Config.pm
3843010    4 -r--r--r--   1 root     root         1107 Sep  6 04:35 /usr/lib/perl5/5.18.1/Module/Build/Config.pm
3678251    8 -r--r--r--   1 root     root         6065 Sep  6 04:35 /usr/lib/perl5/5.18.1/x86_64-linux-thread-multi/Encode/Config.pm
3678047    4 -r--r--r--   1 root     root         3262 Sep  6 04:35 /usr/lib/perl5/5.18.1/x86_64-linux-thread-multi/Config.pm
3848280    8 -r--r--r--   1 root     root         5071 Sep  6 04:35 /usr/lib/perl5/5.18.1/Log/Message/Config.pm
3848256    8 -r--r--r--   1 root     root         7649 Sep  6 04:35 /usr/lib/perl5/5.18.1/Net/Config.pm
3843775   24 -r--r--r--   1 root     root        23783 Sep  6 04:35 /usr/lib/perl5/5.18.1/CPANPLUS/Config.pm
3676500    4 -r--r--r--   1 root     root          567 Sep  6 04:35 /usr/lib/perl5/5.18.1/ExtUtils/MakeMaker/Config.pm


root@wildcat:/usr/local/portage/media-libs/gegl(52)# emerge --info
Portage 2.2.1 (default/linux/amd64/13.0/desktop, gcc-4.7.3, glibc-2.17, 3.10.5-gentoo-r1 x86_64)
=================================================================
System uname: Linux-3.10.5-gentoo-r1-x86_64-Intel-R-_Core-TM-2_Duo_CPU_T7500_@_2.20GHz-with-gentoo-2.2
KiB Mem:     3972068 total,    689620 free
KiB Swap:   12582908 total,  12279720 free
Timestamp of tree: Fri, 06 Sep 2013 02:00:01 +0000
ld GNU ld (GNU Binutils) 2.23.2
distcc 3.1 x86_64-pc-linux-gnu [disabled]
app-shells/bash:          4.2_p45
dev-java/java-config:     2.2.0
dev-lang/python:          2.7.5-r2, 3.2.5-r2, 3.3.2-r2
dev-util/cmake:           2.8.11.1
dev-util/pkgconfig:       0.28
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.12
sys-apps/sandbox:         2.6-r1
sys-devel/autoconf:       2.13, 2.69
sys-devel/automake:       1.10.3, 1.11.6, 1.12.6, 1.13.4, 1.14
sys-devel/binutils:       2.23.2
sys-devel/gcc:            4.7.3
sys-devel/gcc-config:     1.8
sys-devel/libtool:        2.4.2
sys-devel/make:           3.82-r4
sys-kernel/linux-headers: 3.11 (virtual/os-headers)
sys-libs/glibc:           2.17
Repositories: gentoo science sunrise lordvan x-portage g-cpan g-octave
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA PUEL Intel-SDP dlj-1.1 skype-eula skype-4.0.0.7-copyright googleearth AdobeFlash-11.x cadsoft Oracle-BCLA-JavaSE MakeMKV-EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.3/ext-active/ /etc/php/apache2-php5.5/ext-active/ /etc/php/cgi-php5.3/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cli-php5.3/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage_wildcat"
PORTDIR_OVERLAY="/var/lib/layman/science /var/lib/layman/sunrise /var/lib/layman/lordvan /usr/local/portage /var/lib/cpan /var/lib/g-octave"
USE="64bit R X Xaw3d a52 aac acl acpi admin afs alsa amd64 ao apache2 apng applet archive armadillo arpack asf aspell atlas audacious audiofile automap automount bash-completion berkdb blas blast bluetooth bluray boost branding bzip2 cairo cdda cddb cdf cdio cdparanoia cdr cgi chm cli cmake consolekit cracklib crypt css cups curl cxx daap db dbi dbm dbus declarative designer devhelp device-mapper dga dia dirac djvu doc dot dri ds2490 ds9097 ds9097u dts dv dvb dvd dvdr dvi dynamicplugin eds egl elf emacs emboss emf encode epiphany evo examples exif expat extensions extra extras faac faad fam ffmpeg fftw firefox fits flac fltk fontconfig foomaticdb fortran fortran95 fpm fpx fuse g3dvl garmin gcj gd gdal gdbm gdu gedit geoip geolocation geos gfortran gif gimp git glade glib glpk gml gmp gnome gnome-keyring gnome-print gnuplot gnutls gold gphoto2 gpm grammar graphics graphtft graphviz grass gsl gsm gstreamer gtk gtk3 gudev guile hddtemp hdf hdf5 hdri html http httpd hvm hwdb iconv icq icu id3 id3tag ide imagemagick imap inotify introspection ipod ipv6 ithreads jabber jadetex jbig john jpeg jpeg2k kate kdepim kdrive kerberos keymap kpathsea kvm ladspa lame lapack laptop latex lcms ldap lensfun libffi libkms libnotify libsamplerate live lm_sensors lua lzma lzo mad mail maildir mapnik math matroska media-library mercurial mikmod mmx mmxext mng mod modules mono motif mozilla mp3 mp4 mpeg mpi mplayer mtp mudflap multilib multimedia musepack musicbrainz mysql mysqli nautilus ncurses netcdf netpbm network networking networkmanager nfs nls nntp nptl nsplugin ntfs ntp numpy obex objc ocaml ocr octave odbc ofa ogdi ogg openexr opengl openmp openvg pam pango pcre pda pdf perl plasma plotutils plugins png podcast policykit portaudio posix postgres postscript ppds preview-latex proj projectm projectx pstricks pulseaudio python python-bindings q16 q32 qemu qhull qt3support qt4 quicktime raw readline real reiserfs reports rhythmbox rle romio rpc rrdcgi rrdtool samba sasl schroedinger science sdk sdl secure-delete semantic-desktop server session shout sip slang slp smart smbclient smp sms sndfile snmp soap sockets sound soup sox speex spell sql sqlite sse sse2 ssl ssse3 startup-notification stlport subtitles subversion sudo suexec svg svm swig systemd szip t1lib tcl tcpd tex tex4ht texmacs tgif theora thesaurus thinkpad threads thunderbird tidy tiff tk tools truetype udev udisks unicode upower usb userlocales utempter v4l vaapi vala valgrind vdpau video virt-network virtualbox visio vorbis vpx wav webdav webdav-serf webkit wifi wmf wxwidgets x264 xa xattr xcb xemacs xetex xext xft xine xml xmlreader xmlrpc xpm xv xvid xvmc yaml youtube zlib zvbi" ABI_X86="64" ALSA_CARDS="hda-intel" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_core authn_dbm authn_default authn_file authz_core authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info lbmethod_byrequests log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif slotmem_shm so socache_shmcb speling status unique_id unixd userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="canon fuji ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CURL_SSL="nss" DRACUT_MODULES="caps dm lvm mdraid syslog" DVB_CARDS="usb-wt220u" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev synaptics void" KERNEL="linux" LCD_DEVICES="cfontz hd44780 mtxorb ncurses X lcd2usb lcdlinux png usblcd" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="de fr ru" NETBEANS_MODULES="apisupport cnd dlight enterprise ergonomics groovy gsf harness ide identity j2ee java mobility nb php profiler ruby websvccommon xml" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-3" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_2" QEMU_SOFTMMU_TARGETS="arm i386 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby19 ruby18" USERLAND="GNU" VIDEO_CARDS="intel" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, SYNC, USE_PYTHON
Comment 1 Juergen Rose 2013-09-06 09:35:12 UTC 
'perl-cleaner --all -- --backtrack=30' fails also with:
...
>>> Emerging (1 of 284) dev-perl/TermReadKey-2.300.200
 * TermReadKey-2.30.02.tar.gz SHA256 SHA512 WHIRLPOOL size ;-) ...                                                                                                    [ ok ]
>>> Unpacking source...
>>> Unpacking TermReadKey-2.30.02.tar.gz to /var/tmp/portage/dev-perl/TermReadKey-2.300.200/work
>>> Source unpacked in /var/tmp/portage/dev-perl/TermReadKey-2.300.200/work
>>> Preparing source in /var/tmp/portage/dev-perl/TermReadKey-2.300.200/work/TermReadKey-2.30.02 ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/dev-perl/TermReadKey-2.300.200/work/TermReadKey-2.30.02 ...
Can't locate Config.pm:   Permission denied.
BEGIN failed--compilation aborted.
 * Using ExtUtils::MakeMaker
 * perl Makefile.PL PREFIX=/usr INSTALLDIRS=vendor INSTALLMAN3DIR=none DESTDIR=/var/tmp/portage/dev-perl/TermReadKey-2.300.200/image/
Can't locate ExtUtils/MakeMaker.pm:   Permission denied at Makefile.PL line 4.
...

I find two ExtUtils/MakeMaker.pm:

root@wildcat:/usr/local/portage/media-libs/gegl(66)# find /usr/lib/perl5 -name MakeMaker.pm -ls
4335196    4 -r--r--r--   1 root     root         1953 Aug 26 07:58 /usr/lib/perl5/vendor_perl/5.16.3/Inline/MakeMaker.pm
4340463   92 -r--r--r--   1 root     root        92230 Aug 24 12:14 /usr/lib/perl5/vendor_perl/5.16.3/ExtUtils/MakeMaker.pm
3676525   92 -r--r--r--   1 root     root        90940 Sep  6 04:35 /usr/lib/perl5/5.18.1/ExtUtils/MakeMaker.pm

root@wildcat:/usr/local/portage/media-libs/gegl(67)# perl -v

This is perl 5, version 18, subversion 1 (v5.18.1) built for x86_64-linux-thread-multi


I suppose perl-5.18.1 should use /usr/lib/perl5/5.18.1/ExtUtils/MakeMaker.pm, which was directly installed together with perl-5.18.1:

root@wildcat:/usr/local/portage/media-libs/gegl(68)# qfile -v /usr/lib/perl5/5.18.1/ExtUtils/MakeMaker.pm
dev-lang/perl-5.18.1 (/usr/lib64/perl5/5.18.1/ExtUtils/MakeMaker.pm)


The old /usr/lib64/perl5/vendor_perl/5.16.3/ExtUtils/MakeMaker.pm was installed as a part of the package perl-core/ExtUtils-MakeMaker:

root@wildcat:/usr/local/portage/media-libs/gegl(72)# qfile -v /usr/lib/perl5/vendor_perl/5.16.3/ExtUtils/MakeMaker.pm
perl-core/ExtUtils-MakeMaker-6.720.0 (/usr/lib64/perl5/vendor_perl/5.16.3/ExtUtils/MakeMaker.pm)

What can I do?
Comment 2 Juergen Rose 2013-09-06 10:34:34 UTC 
If I try to reemerge perl-5.18.1, it now fails with:
...
LD_LIBRARY_PATH=/var/tmp/portage/dev\-lang/perl\-5.18.1/work/perl\-5.18.1 /var/tmp/portage/dev-lang/perl-5.18.1/work/perl-5.18.1/preload /var/tmp/portage/dev-lang/perl-5.18.1/work/perl-5.18.1/libperl.so.5.18.1  ./miniperl -Ilib write_buildcustomize.pl >lib/buildcustomize.pl
`sh  cflags "optimize='-march=native -O2 -pipe'" perl.o` -fPIC perl.c
          CCCMD =  x86_64-pc-linux-gnu-gcc -DPERL_CORE -c -D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe -fstack-protector -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64  -std=c89 -march=native -O2 -pipe  -Wall -ansi -W -Wextra -Wdeclaration-after-statement -Wendif-labels -Wc++-compat -Wwrite-strings 
LD_LIBRARY_PATH=/var/tmp/portage/dev\-lang/perl\-5.18.1/work/perl\-5.18.1 /var/tmp/portage/dev-lang/perl-5.18.1/work/perl-5.18.1/preload /var/tmp/portage/dev-lang/perl-5.18.1/work/perl-5.18.1/libperl.so.5.18.1  ./miniperl -Ilib configpm
perl.c: In function 'S_init_tls_and_interp':
perl.c:99:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
written lib/Config.pod
updated lib/Config.pm
updated lib/Config_heavy.pl
Can't locate lib/Config.pm:   Permission denied at configpm line 1139.
make: *** [lib/Config.pod] Error 13
Comment 3 Juergen Rose 2013-09-06 10:38:01 UTC 
root@wildcat:/usr/src/linux(10)# emerge --info '=dev-lang/perl-5.18.1::gentoo'
Portage 2.2.1 (default/linux/amd64/13.0/desktop, gcc-4.7.3, glibc-2.17, 3.10.5-gentoo-r1 x86_64)
=================================================================
                        System Settings
=================================================================
System uname: Linux-3.10.5-gentoo-r1-x86_64-Intel-R-_Core-TM-2_Duo_CPU_T7500_@_2.20GHz-with-gentoo-2.2
KiB Mem:     3972068 total,   1943808 free
KiB Swap:   12582908 total,  12582908 free
Timestamp of tree: Fri, 06 Sep 2013 02:00:01 +0000
ld GNU ld (GNU Binutils) 2.23.2
distcc 3.1 x86_64-pc-linux-gnu [disabled]
app-shells/bash:          4.2_p45
dev-java/java-config:     2.2.0
dev-lang/python:          2.7.5-r2, 3.2.5-r2, 3.3.2-r2
dev-util/cmake:           2.8.11.1
dev-util/pkgconfig:       0.28
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.12
sys-apps/sandbox:         2.6-r1
sys-devel/autoconf:       2.13, 2.69
sys-devel/automake:       1.10.3, 1.11.6, 1.12.6, 1.13.4, 1.14
sys-devel/binutils:       2.23.2
sys-devel/gcc:            4.7.3
sys-devel/gcc-config:     1.8
sys-devel/libtool:        2.4.2
sys-devel/make:           3.82-r4
sys-kernel/linux-headers: 3.11 (virtual/os-headers)
sys-libs/glibc:           2.17
Repositories: gentoo science sunrise lordvan x-portage g-cpan g-octave
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA PUEL Intel-SDP dlj-1.1 skype-eula skype-4.0.0.7-copyright googleearth AdobeFlash-11.x cadsoft Oracle-BCLA-JavaSE MakeMKV-EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.3/ext-active/ /etc/php/apache2-php5.5/ext-active/ /etc/php/cgi-php5.3/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cli-php5.3/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage_wildcat"
PORTDIR_OVERLAY="/var/lib/layman/science /var/lib/layman/sunrise /var/lib/layman/lordvan /usr/local/portage /var/lib/cpan /var/lib/g-octave"
USE="64bit R X Xaw3d a52 aac acl acpi admin afs alsa amd64 ao apache2 apng applet archive armadillo arpack asf aspell atlas audacious audiofile automap automount bash-completion berkdb blas blast bluetooth bluray boost branding bzip2 cairo cdda cddb cdf cdio cdparanoia cdr cgi chm cli cmake consolekit cracklib crypt css cups curl cxx daap db dbi dbm dbus declarative designer devhelp device-mapper dga dia dirac djvu doc dot dri ds2490 ds9097 ds9097u dts dv dvb dvd dvdr dvi dynamicplugin eds egl elf emacs emboss emf encode epiphany evo examples exif expat extensions extra extras faac faad fam ffmpeg fftw firefox fits flac fltk fontconfig foomaticdb fortran fortran95 fpm fpx fuse g3dvl garmin gcj gd gdal gdbm gdu gedit geoip geolocation geos gfortran gif gimp git glade glib glpk gml gmp gnome gnome-keyring gnome-print gnuplot gnutls gold gphoto2 gpm grammar graphics graphtft graphviz grass gsl gsm gstreamer gtk gtk3 gudev guile hddtemp hdf hdf5 hdri html http httpd hvm hwdb iconv icq icu id3 id3tag ide imagemagick imap inotify introspection ipod ipv6 ithreads jabber jadetex jbig john jpeg jpeg2k kate kdepim kdrive kerberos keymap kpathsea kvm ladspa lame lapack laptop latex lcms ldap lensfun libffi libkms libnotify libsamplerate live lm_sensors lua lzma lzo mad mail maildir mapnik math matroska media-library mercurial mikmod mmx mmxext mng mod modules mono motif mozilla mp3 mp4 mpeg mpi mplayer mtp mudflap multilib multimedia musepack musicbrainz mysql mysqli nautilus ncurses netcdf netpbm network networking networkmanager nfs nls nntp nptl nsplugin ntfs ntp numpy obex objc ocaml ocr octave odbc ofa ogdi ogg openexr opengl openmp openvg pam pango pcre pda pdf perl plasma plotutils plugins png podcast policykit portaudio posix postgres postscript ppds preview-latex proj projectm projectx pstricks pulseaudio python python-bindings q16 q32 qemu qhull qt3support qt4 quicktime raw readline real reiserfs reports rhythmbox rle romio rpc rrdcgi rrdtool samba sasl schroedinger science sdk sdl secure-delete semantic-desktop server session shout sip slang slp smart smbclient smp sms sndfile snmp soap sockets sound soup sox speex spell sql sqlite sse sse2 ssl ssse3 startup-notification stlport subtitles subversion sudo suexec svg svm swig systemd szip t1lib tcl tcpd tex tex4ht texmacs tgif theora thesaurus thinkpad threads thunderbird tidy tiff tk tools truetype udev udisks unicode upower usb userlocales utempter v4l vaapi vala valgrind vdpau video virt-network virtualbox visio vorbis vpx wav webdav webdav-serf webkit wifi wmf wxwidgets x264 xa xattr xcb xemacs xetex xext xft xine xml xmlreader xmlrpc xpm xv xvid xvmc yaml youtube zlib zvbi" ABI_X86="64" ALSA_CARDS="hda-intel" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_core authn_dbm authn_default authn_file authz_core authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info lbmethod_byrequests log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif slotmem_shm so socache_shmcb speling status unique_id unixd userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="canon fuji ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CURL_SSL="nss" DRACUT_MODULES="caps dm lvm mdraid syslog" DVB_CARDS="usb-wt220u" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev synaptics void" KERNEL="linux" LCD_DEVICES="cfontz hd44780 mtxorb ncurses X lcd2usb lcdlinux png usblcd" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="de fr ru" NETBEANS_MODULES="apisupport cnd dlight enterprise ergonomics groovy gsf harness ide identity j2ee java mobility nb php profiler ruby websvccommon xml" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-3" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_2" QEMU_SOFTMMU_TARGETS="arm i386 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby19 ruby18" USERLAND="GNU" VIDEO_CARDS="intel" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, SYNC, USE_PYTHON

=================================================================
                        Package Settings
=================================================================

dev-lang/perl-5.18.1 was built with the following:
USE="berkdb doc gdbm ithreads -debug"



root@wildcat:/usr/src/linux(11)# emerge -pqv '=dev-lang/perl-5.18.1::gentoo'
[ebuild   R   ] dev-lang/perl-5.18.1  USE="berkdb doc gdbm ithreads -debug"
Comment 4 Juergen Rose 2013-09-06 10:39:19 UTC 
Created attachment 358026 [details]
/var/tmp/portage/dev-lang/perl-5.18.1/temp/build.log
Comment 5 Juergen Rose 2013-09-06 12:45:27 UTC 
(In reply to Juergen Rose from comment #2)
> If I try to reemerge perl-5.18.1, it now fails with:

Should I file a separate bug report for this issue?
Comment 6 Mikle Kolyada (RETIRED) archtester Gentoo Infrastructure gentoo-dev Security 2013-09-11 07:23:08 UTC 
Looks like similar bug 481416