When dev-python/pandas-0.12.0 is emerged with the 'doc' use flag I get reading sources... [ 96%] io Exception occurred while building, starting debugger: Traceback (most recent call last): File "/usr/lib64/python2.7/site-packages/sphinx/cmdline.py", line 189, in main app.build(force_all, filenames) File "/usr/lib64/python2.7/site-packages/sphinx/application.py", line 204, in build self.builder.build_update() File "/usr/lib64/python2.7/site-packages/sphinx/builders/__init__.py", line 196, in build_update 'out of date' % len(to_build)) File "/usr/lib64/python2.7/site-packages/sphinx/builders/__init__.py", line 216, in build purple, length): File "/usr/lib64/python2.7/site-packages/sphinx/builders/__init__.py", line 120, in status_iterator for item in iterable: File "/usr/lib64/python2.7/site-packages/sphinx/environment.py", line 613, in update_generator self.read_doc(docname, app=app) File "/usr/lib64/python2.7/site-packages/sphinx/environment.py", line 764, in read_doc raise SphinxError(str(err)) SphinxError: 'utf8' codec can't decode byte 0xe4 in position 25: invalid continuation byte > /usr/lib64/python2.7/site-packages/sphinx/environment.py(764)read_doc() -> raise SphinxError(str(err)) (Pdb) emerge --info dev-python/pandas Portage 2.2.0_alpha188_p56 (default/linux/amd64/13.0/desktop, gcc-4.7.3, glibc-2.17, 3.10.3-gentoo-r1 x86_64) ================================================================= System Settings ================================================================= System uname: Linux-3.10.3-gentoo-r1-x86_64-AMD_Phenom-tm-_II_X4_940_Processor-with-gentoo-2.2 KiB Mem: 7907972 total, 3793584 free KiB Swap: 1048572 total, 1048572 free Timestamp of tree: Fri, 09 Aug 2013 06:00:01 +0000 ld GNU ld (GNU Binutils) 2.23.1 ccache version 3.1.9 [disabled] app-shells/bash: 4.2_p45 dev-java/java-config: 2.2.0 dev-lang/python: 2.7.5-r1, 3.3.3_pre20130714::progress dev-util/ccache: 3.1.9 dev-util/cmake: 2.8.11.1 dev-util/pkgconfig: 0.28 sys-apps/baselayout: 2.2 sys-apps/openrc: 0.11.8 sys-apps/sandbox: 2.6-r1 sys-devel/autoconf: 2.13, 2.69 sys-devel/automake: 1.8.5-r4, 1.9.6-r3, 1.10.3, 1.11.6, 1.12.6, 1.13.4, 1.14 sys-devel/binutils: 2.23.1 sys-devel/gcc: 4.6.4, 4.7.3, 4.8.1, 4.9.0_pre9999::local sys-devel/gcc-config: 1.8 sys-devel/libtool: 2.4.2 sys-devel/make: 3.82-r4 sys-kernel/linux-headers: 3.9 (virtual/os-headers) sys-libs/glibc: 2.17 Repositories: gentoo local sunrise ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-mtune=native -O2 -msse3 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/polkit-1/actions /var/lib/hsqldb /var/lib/neatx/home" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.4/ext-active/ /etc/php/apache2-php5.5/ext-active/ /etc/php/cgi-php5.4/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cli-php5.4/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-mtune=native -O2 -msse3 -pipe" DISTDIR="/usr/portage/distfiles" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs buildpkg config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo " LANG="en_US.iso88591" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j4" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage /usr/local/portage/layman/sunrise" SYNC="rsync://rsync.informatik.RWTH-Aachen.de/gentoo-portage" USE="3dnow 3dnowext 3dnowprefetch X a52 aac acl acpi alsa amd64 avahi berkdb branding bzip2 cairo cdda cdr cli consolekit cracklib crypt cups cxx dbus dri dts dvd dvdr emboss encode exif fam ffmpeg fftw firefox flac fortran fuse gdbm gfortran gif gimp gnome gpm gtk gtk3 iconv ipv6 jpeg kde lapack lcms libnotify mad mmx mmxext mng modules mp3 mp4 mpeg mudflap multilib ncurses nls nptl nptlonly ogg opengl openmp pam pango pcre pdf png policykit ppds qt qt3support qt4 readline sdl session smp spell sqlite sqlite3 sse sse2 sse3 sse4a ssl startup-notification svg tcl tcpd threads tiff tk truetype udev udisks unicode upower usb vorbis wxwidgets x264 xcb xml xulrunner xv xvid zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" GRUB_PLATFORMS="pc multiboot" INPUT_DEVICES="keyboard mouse evdev wacom" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en de" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-4" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19 ruby18" USERLAND="GNU" VIDEO_CARDS="ati radeon fglrx" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON ================================================================= Package Settings ================================================================= dev-python/pandas-0.11.0 was built with the following: USE="R doc examples -excel -test" PYTHON_TARGETS="python2_7 -python2_6 -python3_2"
Please attach the entire build log to this bug report.
Created attachment 355838 [details] build log
which blas are you using?
there seems to be two build errors: * one with an undefined daxpy_ from scipy : could you rebuild scipy, and run: lddtree /usr/lib64/python2.7/site-packages/scipy/integrate/_odepack.so * one with the generation of documentation where I note you have: LANG="en_US.iso88591". Could you try with utf8?
(In reply to Sébastien Fabbro from comment #4) > there seems to be two build errors: > > * one with an undefined daxpy_ from scipy : could you rebuild scipy, and run: > lddtree /usr/lib64/python2.7/site-packages/scipy/integrate/_odepack.so I did reinstall scipy but I still get lddtree /usr/lib64/python2.7/site-packages/scipy/integrate/_odepack.so _odepack.so => /usr/lib64/python2.7/site-packages/scipy/integrate/_odepack.so (interpreter => none) I don't know why > * one with the generation of documentation where I note you have: > LANG="en_US.iso88591". Could you try with utf8? Yes, temporarily setting LANG=en_US.utf8 fixed the problem Many thanks, Helmut
(In reply to Justin Lecher from comment #3) > which blas are you using? eselect blas list gives atlas-threads Helmut
(In reply to Helmut Jarausch from comment #5) > I did reinstall scipy but I still get > > lddtree /usr/lib64/python2.7/site-packages/scipy/integrate/_odepack.so > _odepack.so => > /usr/lib64/python2.7/site-packages/scipy/integrate/_odepack.so (interpreter > => none) strange, you might report a bug to pax-utils. for now, could you try ldd -r ? > > > * one with the generation of documentation where I note you have: > > LANG="en_US.iso88591". Could you try with utf8? > > Yes, temporarily setting LANG=en_US.utf8 fixed the problem i forced LANG=C to build doc. let me know if that worked for you.
Works for latest pandas.
