Created attachment 353036 [details] Build log. Currently hugin is failing to link. It complains bout missing boost::thread::join and boost::thread::start_thread. /usr/bin/x86_64-pc-linux-gnu-g++ -O2 -pipe -mtune=native -march=native -O2 -O3 -Wl,-O1 -Wl,--as-needed -Wl,--sort-common -Wl,--enable-new-dtags -Wl,--hash-style=gnu CMakeFiles/celeste_standalone.dir/Main.cpp.o -o celeste_standalone -rdynamic libceleste.so.0.0 ../foreign/vigra/vigra_impex/libhuginvigraimpex.so.0.0 -lImath -lIlmImf -lIex -lHalf -lIlmThread -ljpeg -ltiff -lpng -lz -lz -lexiv2 ../hugin_base/libhuginbase.so.0.0 -lboost_thread-mt -lboost_date_time-mt -lboost_regex-mt -lboost_filesystem-mt -lboost_iostreams-mt -lboost_system-mt -lboost_signals-mt -lpano13 -lreflapack -leigen_blas -lGLEW ../foreign/levmar/libhuginlevmar.a ../foreign/vigra/vigra_impex/libhuginvigraimpex.so.0.0 -lpthread -lImath -lIlmImf -lIex -lHalf -lIlmThread -ljpeg -lpng -lz ../hugin_base/makefilelib/libmakefilelib.so.0.0 -lpthread -lGLU -lGL -lSM -lICE -lX11 -lXext -lglut -lXmu -lXi -lpthread -lGLU -lGL -lSM -lICE -lX11 -lXext -lglut -lXmu -lXi -ltiff -lexiv2 -llensfun -lboost_thread-mt -lboost_date_time-mt -lboost_regex-mt -lboost_filesystem-mt -lboost_iostreams-mt -lboost_system-mt -lboost_signals-mt -lpano13 -lreflapack -leigen_blas -lGLEW -Wl,-rpath,/gentoo/tmp/portage/media-gfx/hugin-2012.0.0/work/hugin-2012.0.0_build/src/celeste:/gentoo/tmp/portage/media-gfx/hugin-2012.0.0/work/hugin-2012.0.0_build/src/foreign/vigra/vigra_impex:/gentoo/tmp/portage/media-gfx/hugin-2012.0.0/work/hugin-2012.0.0_build/src/hugin_base:/gentoo/tmp/portage/media-gfx/hugin-2012.0.0/work/hugin-2012.0.0_build/src/hugin_base/makefilelib: ../hugin_base/libhuginbase.so.0.0: undefined reference to `boost::thread::join()' ../hugin_base/libhuginbase.so.0.0: undefined reference to `boost::thread::start_thread()' collect2: error: ld returned 1 exit status emerge --info '=media-gfx/hugin-2012.0.0' boost Portage 2.2.0_alpha188 (default/linux/amd64/13.0/desktop/kde, gcc-4.7.3, glibc-2.17, 3.10.0-gentoo x86_64) ================================================================= System Settings ================================================================= System uname: Linux-3.10.0-gentoo-x86_64-AMD_Phenom-tm-_II_X6_1055T_Processor-with-gentoo-2.2 KiB Mem: 8165596 total, 1031504 free KiB Swap: 10491892 total, 9982632 free Timestamp of tree: Wed, 10 Jul 2013 17:15:01 +0000 ld GNU ld (GNU Binutils) 2.23.1 ccache version 3.1.9 [disabled] app-shells/bash: 4.2_p45 dev-java/java-config: 2.2.0 dev-lang/python: 2.7.5, 3.3.2-r1 dev-util/ccache: 3.1.9-r1::science dev-util/cmake: 2.8.11.1 dev-util/pkgconfig: 0.28 sys-apps/baselayout: 2.2 sys-apps/openrc: 0.11.8 sys-apps/sandbox: 2.6-r1 sys-devel/autoconf: 2.13, 2.69 sys-devel/automake: 1.9.6-r3, 1.10.3, 1.11.6, 1.12.6, 1.14 sys-devel/binutils: 2.23.1 sys-devel/gcc: 4.7.3 sys-devel/gcc-config: 1.8 sys-devel/libtool: 2.4.2 sys-devel/make: 3.82-r4 sys-kernel/linux-headers: 3.9 (virtual/os-headers) sys-libs/glibc: 2.17 Repositories: gentoo zeekec 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QEMU_USER_TARGETS="i386 ppc ppc64 ppc64abi32 x86_64" RUBY_TARGETS="ruby18 ruby19 ruby20" SANE_BACKENDS="canon canon630u canon_dr canon_pp hp hp3500 hp3900 hp4200 hp5400 hp5590 hpljm1005 hpsj5s net pnm" USERLAND="GNU" VIDEO_CARDS="radeon r300 r600" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, USE_PYTHON ================================================================= Package Settings ================================================================= media-gfx/hugin-2012.0.0 was built with the following: USE="(consolekit) lapack (multilib) (policykit) python sift" ABI_X86="64" LINGUAS="-bg -ca -cs -da -de -en_GB -es -fi -fr -hu -it -ja -ko -nl -pl -pt_BR -ro -ru -sk -sl -sv -uk -zh_CN -zh_TW" dev-libs/boost-1.53.0 was built with the following: USE="icu mpi nls python threads -debug -doc -static-libs -tools" PYTHON_TARGETS="python2_7 python3_3 -python2_5 -python2_6 -python3_1 -python3_2" CXXFLAGS="-O2 -pipe -mtune=native -march=native -O2 -std=gnu++98"
I get the same bug with my own code, but strangely not with a simple "hello world"-like example.
Same error here.
Is this still an issue in media-gfx/hugin-2013.0.0_rc1 (ebuild in my overlay)?
(In reply to Markus Meier from comment #3) > Is this still an issue in media-gfx/hugin-2013.0.0_rc1 (ebuild in my > overlay)? I get the same error.
(In reply to Andreas Schäfer from comment #1) > I get the same bug with my own code, but strangely not with a simple "hello > world"-like example. The fact that you see the same error with your own code would indicate that the problem is with boost. I realize that your "hello world" didn't show the problem, but do you have a simple case that does show it?
(In reply to Erik Zeek from comment #5) > (In reply to Andreas Schäfer from comment #1) > > I get the same bug with my own code, but strangely not with a simple "hello > > world"-like example. > > The fact that you see the same error with your own code would indicate that > the problem is with boost. I realize that your "hello world" didn't show > the problem, but do you have a simple case that does show it? I don't think this qualifies as simple, but here we go (you'll need the science overlay) emerge -v =dev-libs/boost-1.53.0 emerge -v =libgeodecomp-9999 The last emerge will fail. You can check linking the executable yourself: cd /var/tmp/portage/sci-libs/libgeodecomp-9999/work/libgeodecomp-9999_build/ VERBOSE=true make
And yes: it seems to be a Boost issue.
(In reply to Markus Meier from comment #3) > Is this still an issue in media-gfx/hugin-2013.0.0_rc1 (ebuild in my > overlay)? Where can I find your overlay?
(In reply to Juergen Rose from comment #8) > (In reply to Markus Meier from comment #3) > > Is this still an issue in media-gfx/hugin-2013.0.0_rc1 (ebuild in my > > overlay)? > > Where can I find your overlay? OK, I found http://git.overlays.gentoo.org/gitweb/?p=dev/maekke.git;a=snapshot;h=06c5e9a7143c78571e04aa5b5a2e35ffb920052f;sf=tbz2. With the contained hugin-2013.0.0_rc1.ebuild 'emerge hugin' failed with: cd /var/tmp/portage/media-gfx/hugin-2013.0.0_rc1/work/hugin-2013.0.0_rc1_build/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/autooptimiser.dir/link.txt --verbose=1 /usr/bin/x86_64-pc-linux-gnu-g++ -march=amdfam10 -O2 -pipe -Wl,-O1 -Wl,--as-needed CMakeFiles/autooptimiser.dir/autooptimiser.cpp.o -o autooptimiser -rdynamic ../hugin_base/libhuginbase.so.0.0 -lboost_thread-mt -lboost_date_time-mt -lboost_regex-mt -lboost_filesystem-mt -lboost_iostreams-mt -lboost_system-mt -lboost_signals-mt -lpano13 -latllapack -lf77blas -latlcblas -lGLEW ../foreign/levmar/libhuginlevmar.a ../foreign/vigra/vigra_impex/libhuginvigraimpex.so.0.0 -lImath -lIlmImf -lIex -lHalf -lIlmThread -ljpeg -ltiff -lpng -lz -lz -lexiv2 -lpthread -lImath -lIlmImf -lIex -lHalf -lIlmThread -ljpeg -lpng -lz ../hugin_base/makefilelib/libmakefilelib.so.0.0 -lpthread -lGLU -lGL -lSM -lICE -lX11 -lXext -lglut -lXmu -lXi -lpthread -lGLU -lGL -lSM -lICE -lX11 -lXext -lglut -lXmu -lXi -lboost_thread-mt -lboost_date_time-mt -lboost_regex-mt -lboost_filesystem-mt -lboost_iostreams-mt -lboost_system-mt -lboost_signals-mt -lpano13 -latllapack -lf77blas -latlcblas -lGLEW -ltiff -lexiv2 -llensfun -Wl,-rpath,/var/tmp/portage/media-gfx/hugin-2013.0.0_rc1/work/hugin-2013.0.0_rc1_build/src/hugin_base:/var/tmp/portage/media-gfx/hugin-2013.0.0_rc1/work/hugin-2013.0.0_rc1_build/src/foreign/vigra/vigra_impex:/var/tmp/portage/media-gfx/hugin-2013.0.0_rc1/work/hugin-2013.0.0_rc1_build/src/hugin_base/makefilelib: ../hugin_base/libhuginbase.so.0.0: undefined reference to `boost::thread::join()' ../hugin_base/libhuginbase.so.0.0: undefined reference to `boost::thread::start_thread()' collect2: error: ld returned 1 exit status make[2]: *** [src/tools/autooptimiser] Error 1
(In reply to Andreas Schäfer from comment #6) > I don't think this qualifies as simple, but here we go (you'll need the > science overlay) > > emerge -v =dev-libs/boost-1.53.0 > emerge -v =libgeodecomp-9999 > > The last emerge will fail. You can check linking the executable yourself: > > cd /var/tmp/portage/sci-libs/libgeodecomp-9999/work/libgeodecomp-9999_build/ > VERBOSE=true make Sorry for not getting back to this sooner, but libgeodecomp emerges just fine for me.
I found it! For some reason, I had two directories from older installs of boost hanging around (/usr/include/boost-1_5{1,2}). Hugin was picking up the 1.52 version of the headers (you can see it in the build log), and then linking against 1.53 version of the libs. Neither of those old directories were claimed by any packages. They are probably left over from when slotting boost was dropped.
Jikes, I too had old Boost leftovers on my disk. Removing those fixed compilation with Boost 1.53 for me. And I thought I had already pruned them. Thanks, Erik!
(In reply to Erik Zeek from comment #11) > I found it! > > For some reason, I had two directories from older installs of boost hanging > around (/usr/include/boost-1_5{1,2}). Hugin was picking up the 1.52 version > of the headers (you can see it in the build log), and then linking against > 1.53 version of the libs. > > Neither of those old directories were claimed by any packages. They are > probably left over from when slotting boost was dropped. This fixed it for me too. Thanks for finding that Eric!
Thanks Eric, I found a /usr/include/boost-1_51 directory. After removing this directory I could emerge hugin-2013.0.0_rc1.
Thank you Erik!
*** Bug 480488 has been marked as a duplicate of this bug. ***
