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Bug 476412 - sys-cluster/openmpi-1.6.4-r1 failed (configure phase): econf failed
Summary: sys-cluster/openmpi-1.6.4-r1 failed (configure phase): econf failed
Status: RESOLVED TEST-REQUEST
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: New packages (show other bugs)
Hardware: AMD64 Linux
: Normal normal (vote)
Assignee: Gentoo Linux bug wranglers
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2013-07-10 17:08 UTC by Randy Andy
Modified: 2013-07-10 20:13 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
/var/tmp/portage/sys-cluster/openmpi-1.6.4-r1/work/openmpi-1.6.4/config.log (openmpi-1.6.4-r1-config.log,17.17 KB, text/x-log)
2013-07-10 17:27 UTC, Randy Andy
Details
config.log (file_476412.txt,227.09 KB, text/plain)
2013-07-10 19:01 UTC, Tom Wijsman (TomWij) (RETIRED)
Details

Note You need to log in before you can comment on or make changes to this bug.
Description Randy Andy 2013-07-10 17:08:37 UTC
>>> Emerging (1 of 1) sys-cluster/openmpi-1.6.4-r1
 * openmpi-1.6.4.tar.bz2 SHA256 SHA512 WHIRLPOOL size ;-) ...                                                                 [ ok ]
 * Using following Fortran compiler:
 *   F77: x86_64-pc-linux-gnu-gfortran
 *   FC:  x86_64-pc-linux-gnu-gfortran

 * WARNING: use of MPI_THREAD_MULTIPLE is still disabled by
 * default and officially unsupported by upstream.
 * You may stop now and set USE=-mpi-threads


 * OpenMPI has an overwhelming count of configuration options.
 * Don't forget the EXTRA_ECONF environment variable can let you
 * specify configure options if you find them necessary.

>>> Unpacking source...
>>> Unpacking openmpi-1.6.4.tar.bz2 to /var/tmp/portage/sys-cluster/openmpi-1.6.4-r1/work
>>> Source unpacked in /var/tmp/portage/sys-cluster/openmpi-1.6.4-r1/work
>>> Preparing source in /var/tmp/portage/sys-cluster/openmpi-1.6.4-r1/work/openmpi-1.6.4 ...
 * Applying hooks-disable-malloc-override-inside-of-Gentoo-sandb.patch ...                                                    [ ok ]
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sys-cluster/openmpi-1.6.4-r1/work/openmpi-1.6.4 ...
 * econf: updating openmpi-1.6.4/config/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating openmpi-1.6.4/config/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating openmpi-1.6.4/opal/libltdl/config/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating openmpi-1.6.4/opal/libltdl/config/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating openmpi-1.6.4/ompi/contrib/vt/vt/config/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating openmpi-1.6.4/ompi/contrib/vt/vt/config/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating openmpi-1.6.4/ompi/contrib/vt/vt/extlib/otf/config/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating openmpi-1.6.4/ompi/contrib/vt/vt/extlib/otf/config/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating openmpi-1.6.4/ompi/mca/io/romio/romio/confdb/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating openmpi-1.6.4/ompi/mca/io/romio/romio/confdb/config.sub with /usr/share/gnuconfig/config.sub
./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --disable-silent-rules --disable-dependency-tracking --sysconfdir=/etc/openmpi --enable-pretty-print-stacktrace --enable-orterun-prefix-by-default --with-hwloc=/usr --enable-mpi-thread-multiple --enable-opal-multi-threads --enable-contrib-no-build=vt --enable-mpi-cxx --enable-io-romio --disable-heterogeneous --enable-ipv6 --without-udapl --without-openib --without-knem --without-mx --without-psm --disable-openib-control-hdr-padding --disable-openib-connectx-xrc --disable-openib-rdmacm --disable-openib-dynamic-sl --disable-btl-openib-failover --without-sctp --without-tm --without-slurm
configure: loading site script /usr/share/config.site

============================================================================
== Configuring Open MPI
============================================================================

*** Startup tests
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking for a BSD-compatible install... /usr/lib64/portage/bin/ebuild-helpers/xattr/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking how to create a ustar tar archive... gnutar
checking dependency style of x86_64-pc-linux-gnu-gcc... none
checking whether make supports nested variables... yes

*** Checking versions
checking Open MPI version... 1.6.4
checking Open MPI release date... Feb 19, 2013
checking Open MPI Subversion repository version... r28081
checking Open MPI Run-Time Environment version... 1.6.4
checking Open MPI Run-Time Environment release date... Feb 19, 2013
checking Open MPI Run-Time Environment Subversion repository version... r28081
checking Open Portable Access Layer version... 1.6.4
checking Open Portable Access Layer release date... Feb 19, 2013
checking Open Portable Access Layer Subversion repository version... r28081

*** Initialization, setup
configure: builddir: /var/tmp/portage/sys-cluster/openmpi-1.6.4-r1/work/openmpi-1.6.4
configure: srcdir: /var/tmp/portage/sys-cluster/openmpi-1.6.4-r1/work/openmpi-1.6.4
installing to directory "/usr"

*** OPAL Configuration options
checking if want to run code coverage... no
checking if want to compile with branch probabilities... no
checking if want to debug memory usage... no
checking if want to profile memory usage... no
checking if want developer-level compiler pickyness... no
checking if want developer-level debugging code... no
checking if want to install project-internal header files... no
checking if want pretty-print stacktrace... yes
checking if want pty support... yes
checking if want weak symbol support... yes
checking if want dlopen support... yes
checking if want heterogeneous support... no
checking if want trace file debugging... no
checking if want fault tolerance... Disabled fault tolerance
checking if want IPv6 support... yes
checking if want package/brand string... Open MPI root@big-server Distribution
checking if want ident string... 1.6.4
checking if want to use an alternative checksum algo for messages... no
checking maximum length of processor name... 256
checking maximum length of error string... 256
checking maximum length of object name... 64
checking maximum length of info key... 36
checking maximum length of info val... 256
checking maximum length of port name... 1024
checking maximum length of datarep string... 128

*** ORTE Configuration options
checking if want full RTE support... yes
checking if want orterun "--prefix" behavior to be enabled by default... yes

*** OMPI Configuration options
checking if want compile-time warnings inside of mpi.h... no
checking if want sparse process groups... no
checking if want peruse support... no
checking if want Fortran 77 bindings... yes
checking if want Fortran 90 bindings... yes
checking Fortran 90 bindings "size"... small
checking if want PMPI... yes
checking if want C++ bindings... yes
checking if want MPI::SEEK_SET support... yes
checking if want run-time MPI parameter checking... runtime
checking max supported array dimension in F90 MPI bindings... 4

============================================================================
== Compiler and preprocessor tests
============================================================================

*** C compiler and preprocessor
checking for x86_64-pc-linux-gnu-gcc... (cached) x86_64-pc-linux-gnu-gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... (cached) yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... (cached) none needed
checking whether x86_64-pc-linux-gnu-gcc and cc understand -c and -o together... yes
checking for the C compiler vendor... gnu
checking for ANSI C header files... (cached) yes
checking if x86_64-pc-linux-gnu-gcc supports -finline-functions... yes
checking if x86_64-pc-linux-gnu-gcc supports -fno-strict-aliasing... yes
configure: WARNING:  -fno-strict-aliasing has been added to CFLAGS
checking if x86_64-pc-linux-gnu-gcc supports __builtin_expect... no
checking if x86_64-pc-linux-gnu-gcc supports __builtin_prefetch... no
checking for C optimization flags... -DNDEBUG -march=core2 -mcx16 -msahf -mno-movbe -mno-aes -mno-pclmul -mno-popcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-bmi2 -mno-tbm -mno-avx -mno-avx2 -mno-sse4.2 -mno-sse4.1 -mno-lzcnt -mno-rdrnd -mno-f16c -mno-fsgsbase --param l1-cache-size=32 l1-cache-line-size=64 l2-cache-size=4096 -mtune=core2 -mmmx -msse -msse2 -msse3 -mssse3 -mfpmath=sse -O2 -pipe -fomit-frame-pointer -finline-functions -fno-strict-aliasing
checking for Interix environment... no
checking for C ident string support... 
checking for int8_t... no
checking for uint8_t... no
checking for int16_t... no
checking for uint16_t... no
checking for int32_t... no
checking for uint32_t... no
checking for int64_t... no
checking for uint64_t... no
checking for int128_t... no
checking for uint128_t... no
checking for long long... no
checking for long double... no
checking for float _Complex... no
checking for double _Complex... no
checking for long double _Complex... no
checking for intptr_t... no
checking for uintptr_t... no
checking for mode_t... no
checking for ssize_t... no
checking for ptrdiff_t... no
checking size of char... 0
checking size of short... 0
checking size of int... 0
checking size of long... 0
checking size of float... 0
checking size of double... 0
checking size of void *... 0
checking size of size_t... 0
checking size of wchar_t... 0
checking alignment of _Bool... configure: WARNING: *** Problem running configure test!
configure: WARNING: *** See config.log for details.
configure: error: *** Cannot continue.

!!! Please attach the following file when seeking support:
!!! /var/tmp/portage/sys-cluster/openmpi-1.6.4-r1/work/openmpi-1.6.4/config.log
 * ERROR: sys-cluster/openmpi-1.6.4-r1 failed (configure phase):
 *   econf failed
 * 
 * Call stack:
 *          ebuild.sh, line   93:  Called src_configure
 *        environment, line 2855:  Called econf '--sysconfdir=/etc/openmpi' '--enable-pretty-print-stacktrace' '--enable-orterun-prefix-by-default' '--with-hwloc=/usr' '--enable-mpi-thread-multiple' '--enable-opal-multi-threads' '--enable-contrib-no-build=vt' '--enable-mpi-cxx' '--enable-io-romio' '--disable-heterogeneous' '--enable-ipv6' '--without-udapl' '--without-openib' '--without-knem' '--without-mx' '--without-psm' '--disable-openib-control-hdr-padding' '--disable-openib-connectx-xrc' '--disable-openib-rdmacm' '--disable-openib-dynamic-sl' '--disable-btl-openib-failover' '--without-sctp' '--without-tm' '--without-slurm'
 *   phase-helpers.sh, line  521:  Called die
 * The specific snippet of code:
 *                      die "econf failed"
 * 
 * If you need support, post the output of `emerge --info '=sys-cluster/openmpi-1.6.4-r1'`,
 * the complete build log and the output of `emerge -pqv '=sys-cluster/openmpi-1.6.4-r1'`.
 * The complete build log is located at '/var/tmp/portage/sys-cluster/openmpi-1.6.4-r1/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sys-cluster/openmpi-1.6.4-r1/temp/environment'.
 * Working directory: '/var/tmp/portage/sys-cluster/openmpi-1.6.4-r1/work/openmpi-1.6.4'
 * S: '/var/tmp/portage/sys-cluster/openmpi-1.6.4-r1/work/openmpi-1.6.4'

>>> Failed to emerge sys-cluster/openmpi-1.6.4-r1, Log file:

>>>  '/var/tmp/portage/sys-cluster/openmpi-1.6.4-r1/temp/build.log'
 * 
 * The following package has failed to build or install:
 * 
 *  (sys-cluster/openmpi-1.6.4-r1::gentoo, ebuild scheduled for merge), Log file:
 *   '/var/tmp/portage/sys-cluster/openmpi-1.6.4-r1/temp/build.log'


Fails in the same way, even if I try to build it with x86_64-pc-linux-gnu-4.7.3.

Does it depend on my system environment or is it a real bug?

Many thanks, Andy
Comment 1 Randy Andy 2013-07-10 17:09:03 UTC
emerge --info =sys-cluster/openmpi-1.6.4-r1
Portage 2.2.0_alpha188 (default/linux/amd64/13.0/desktop/kde, gcc-4.8.1, glibc-2.17, 3.9.7-gentoo x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-3.9.7-gentoo-x86_64-Intel-R-_Core-TM-2_Quad_CPU_Q6600_@_2.40GHz-with-gentoo-2.2
KiB Mem:     8169624 total,   2606780 free
KiB Swap:          0 total,         0 free
Timestamp of tree: Wed, 10 Jul 2013 15:30:01 +0000
ld GNU ld (GNU Binutils) 2.23.1
distcc 3.1 x86_64-pc-linux-gnu [disabled]
app-shells/bash:          4.2_p45
dev-java/java-config:     2.2.0
dev-lang/python:          2.7.5, 3.2.5-r1, 3.3.2-r1
dev-util/cmake:           2.8.11.1
dev-util/pkgconfig:       0.28
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.11.8
sys-apps/sandbox:         2.6-r1
sys-devel/autoconf:       2.13, 2.69
sys-devel/automake:       1.10.3, 1.11.6, 1.12.6, 1.13.4, 1.14
sys-devel/binutils:       2.23.1
sys-devel/gcc:            4.7.3, 4.8.1
sys-devel/gcc-config:     1.8
sys-devel/libtool:        2.4.2
sys-devel/make:           3.82-r4
sys-kernel/linux-headers: 3.9 (virtual/os-headers)
sys-libs/glibc:           2.17
Repositories: gentoo betagarden
Installed sets: @system
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=core2 -mcx16 -msahf -mno-movbe -mno-aes -mno-pclmul -mno-popcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-bmi2 -mno-tbm -mno-avx -mno-avx2 -mno-sse4.2 -mno-sse4.1 -mno-lzcnt -mno-rdrnd -mno-f16c -mno-fsgsbase --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=4096 -mtune=core2 -mmmx -msse -msse2 -msse3 -mssse3 -mfpmath=sse -O2 -pipe -fomit-frame-pointer"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/polkit-1/actions"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=core2 -mcx16 -msahf -mno-movbe -mno-aes -mno-pclmul -mno-popcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-bmi2 -mno-tbm -mno-avx -mno-avx2 -mno-sse4.2 -mno-sse4.1 -mno-lzcnt -mno-rdrnd -mno-f16c -mno-fsgsbase --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=4096 -mtune=core2 -mmmx -msse -msse2 -msse3 -mssse3 -mfpmath=sse -O2 -pipe -fomit-frame-pointer"
DISTDIR="/usr/portage/distfiles"
EMERGE_DEFAULT_OPTS="--quiet-build=n --keep-going --autounmask-write"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://gentoo.tiscali.nl/ http://ftp.uni-erlangen.de/pub/mirrors/gentoo http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror/"
LANG="de_DE.UTF-8"
LC_ALL=""
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j4"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/betagarden"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="X a52 aac aacs aalib accessibility acpi additions addressbook aften alsa amd64 amr animgif apm apng aspell audiofile autoipd autotrace avahi bash-completion berkdb binary-drivers binfilter bluetooth bluray branding bzip2 c++0x cairo canvas caps ccache cdda cddb cdio cdparanoia cdr cdrdao cdrom cgi chipcard chroot cjk clamav cli clucene compressed-lumas consolekit corefonts cover cracklib crypt css cups custom-cpuopts cvs cvsgraph cxx daemon dar64 dbus dc1394 declarative dhcpcd dia dirac disk-partition djbfft djvu dri dts dv dvd dvdnav dvdr dvi dynamic editor emboss emovix enca encode enscript excel exif extensions extrafilters extras fam fame fat ffmpeg fftw finger firefox firefox3 flac flash flv fmod fontconfig foomaticdb fortran fortran2003 fpx frei0r fuse g3dvl gallium gcj gd gdbm geolocation gif gimp glew glib glut gnokii gpac gphoto2 gpm graphviz gsl gstreamer gtk gtk3 gzip hddtemp hdri howl-compat html http httpd iconv icq id3 id3tag ieee1394 image imagemagick imap imlib inkjar inotify introspection ipc iptv ipv6 irc ivtv jabber java java6 javacomm javascript jbig jce jingle joystick jpeg jpeg2k juju kde kdepim kdm kexiv2 kig-scripting kino kipi kmail kontact ladspa lame lcdfilter lcms ldap lensfun libcaca libnotify librrd libsamplerate libv4l libv4l2 libvisual lightning live llvm lm_sensors logrotate logwatch loop-aes lua lzma lzo mad marble math matroska mdnsresponder-compat melt metric midi mikmod mime mjpeg mmx mng modplug modules mono mouse mozdevelop mozilla mp3 mp3rtp mp4 mpd mpeg mpg123 mpi mpi-threads mplayer mpu401 mtp mudflap muine multilib multimedia multiprocess musepack music musicbrainz mysql mysqli nano-syntax nas ncurses network network-cron nfs nfsdcld nfsidmap nfsv4 nfsv41 nls nntp normalize nptl nsplugin nss ntfs nut nuv obex ocean odk ofa ogg ogg123 ogm okular opencl openctl openexr opengl openmedia openmp openssl opensslcrypt oss pam pango pch pcm pcre pda pdf pdfimport perforce perl pg-intdatetime phonon php physfs pipe plasma player plotutils pmount pmu png pnm podcast policykit pop postgis postproc ppds prison private-headers profile profiler proj ps pstoedit pvr python python3 q32 qalculate qos qt3support qt4 quesoglc quicktime quodlibet radio rar raw readline redeyes rle romio rsh rss rtc rtmp rtsp ruby scale0tilt scanner schedule schroedinger sdl sdl-image sdl-sound sdlaudio search secure-delete semantic-desktop sensord session sftp shaders shine shorten shout sift skins slideshow smp sms sndfile sound soundextract soundtouch soup source spamassassin speex spell sql srt srtp sse sse2 sse2check sse3 ssh ssl ssse3 startup-notification statistics stats stk stream suid svg svgz sysfs syslog szip t1lib tbb tcl tcmalloc tcpd teletext templates tga tgif themes theora threads threadsafe thumbnail thumbnails tiff timidity tk toolame tools transcode tremor truetype tv_check tv_combiner tv_pick_cgi twolame type3 udev udisks umfpack unicode unzip upower urlpicpreview usb utempter utils uudeview v4l v4l2 vaapi vamp vcd vcdinfo vcdx vdpau vdr video vim vim-syntax virtuoso visibility vlm vorbis vpx vrml vxml wav wavpack weather-metar weather-xoap webcam webdav webgl webkit webm webp windeco winpopup wma wma-fixed wmf word-perfect wordperfect wxwidgets wxwindows x11vnc x264 xanim xattr xcb xcf xcomposite xface xforms xine xinerama xml xmlreader xmlwriter xmp xorg xpm xscreensaver xsl xslt xterm xulrunner xv xvid xvmc xwax_decoders_aac xwax_decoders_cd xwax_decoders_flac xwax_decoders_misc xwax_decoders_mp3 xwax_decoders_ogg youtube yv12 zeroconf zip zlib zvbi" ABI_X86="64" ALSA_CARDS="hda-intel" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="*" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="de en de_DE" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-4" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_2" RUBY_TARGETS="ruby19 ruby18" SANE_BACKENDS="plustek" USERLAND="GNU" VIDEO_CARDS="nvidia v4l2" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, INSTALL_MASK, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Comment 2 Randy Andy 2013-07-10 17:27:37 UTC
Created attachment 353024 [details]
/var/tmp/portage/sys-cluster/openmpi-1.6.4-r1/work/openmpi-1.6.4/config.log
Comment 3 Randy Andy 2013-07-10 17:36:29 UTC
Please open openmpi-1.6.4/config.log as zip.file, if you can't read it. Sorry for doing it wrong.
Comment 4 Tom Wijsman (TomWij) (RETIRED) gentoo-dev 2013-07-10 19:01:44 UTC
Created attachment 353032 [details]
config.log

> x86_64-pc-linux-gnu-gcc: error: l1-cache-line-size=64: No such file or directory
> x86_64-pc-linux-gnu-gcc: error: l2-cache-size=4096: No such file or directory

Looks like you need to set more sane C{,XX}FLAGS.
Comment 5 Randy Andy 2013-07-10 20:13:00 UTC
(In reply to Tom Wijsman (TomWij) from comment #4)
> Created attachment 353032 [details]
> config.log
> 
> > x86_64-pc-linux-gnu-gcc: error: l1-cache-line-size=64: No such file or directory
> > x86_64-pc-linux-gnu-gcc: error: l2-cache-size=4096: No such file or directory
> 
> Looks like you need to set more sane C{,XX}FLAGS.

You're right Tom.
After removing the entries with the prefix --param in my CFLAGS it compiles fine.
Seems that openmpi checks the CFLAGS stricter than any other package, cause I never had these trouble before, since I implement these settings (about half a year now).

I took over these settings from the output of:
gcc -march=native -E -v - </dev/null 2>&1 | grep cc1
to activate all possible instuctions of my CPU, cause neither march=native nor -march=core2 -mtune=core2 activates the enhanced ssse instructions of my CPU (x86_64 Intel(R) Core(TM)2 Quad CPU Q6600 @ 2.40GHz).

So as you supposed, case is solved now.

Many thanks, Andy.