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Bug 475774 - dev-lang/R-3.0.1: Build failed due to "3 arguments passed to .Internal(loadFromConn2) which requires 2"
Summary: dev-lang/R-3.0.1: Build failed due to "3 arguments passed to .Internal(loadFr...
Status: RESOLVED OBSOLETE
Alias: None
Product: Gentoo/Alt
Classification: Unclassified
Component: Prefix Support (show other bugs)
Hardware: All OS X
: Normal normal (vote)
Assignee: Gentoo Prefix
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2013-07-04 22:32 UTC by Yishen Miao (mys_721tx)
Modified: 2016-05-08 15:12 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log for dev-lang/R-3.0.1 (build.log,146.25 KB, application/octet-stream)
2013-07-04 22:33 UTC, Yishen Miao (mys_721tx)
Details

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Description Yishen Miao (mys_721tx) 2013-07-04 22:32:51 UTC
When building the datasets package for R, the following error message appears and halted the building process.

make[3]: Entering directory `/Users/mys_721tx/gentoo/var/tmp/portage/dev-lang/R-3.0.1/work/R-3.0.1/src/library/datasets'
building package 'datasets'
mkdir -p -- ../../../library/datasets
make[4]: Entering directory `/Users/mys_721tx/gentoo/var/tmp/portage/dev-lang/R-3.0.1/work/R-3.0.1/src/library/datasets'
make[4]: Leaving directory `/Users/mys_721tx/gentoo/var/tmp/portage/dev-lang/R-3.0.1/work/R-3.0.1/src/library/datasets'
mkdir -p -- ../../../library/datasets/data
Error in load(zfile, envir = envir) : 
  3 arguments passed to .Internal(loadFromConn2) which requires 2
Calls: <Anonymous> -> <Anonymous> -> load
Execution halted

Reproducible: Always

Steps to Reproduce:
1. emerge "=dev-lang/R-3.0.1"
Actual Results:  
Build failed.

Expected Results:  
Build successes.

 $ emerge --info '=dev-lang/R-3.0.1'
Portage 2.2.01.22097-prefix (prefix/darwin/macos/10.8/x64, gcc-4.2.1, unavailable, 12.4.0 x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Darwin-12.4.0-x86_64-i386-64bit
Timestamp of tree: Thu, 04 Jul 2013 21:36:02 +0000
app-shells/bash:      4.2_p39-r1
dev-lang/python:      2.7.5, 3.2.3-r2, 3.3.2
dev-util/cmake:       2.8.11.1
dev-util/pkgconfig:   0.28
sys-devel/autoconf:   2.69
sys-devel/automake:   1.12.4
sys-devel/gcc-config: 1.8-r00.1
sys-devel/libtool:    2.4.2
sys-devel/make:       3.82-r4
Repositories: gentoo_prefix local_overlay
ACCEPT_KEYWORDS="~x64-macos"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-apple-darwin12"
CFLAGS="-march=nocona -O2 -pipe"
CHOST="x86_64-apple-darwin12"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/terminfo"
CXXFLAGS="-march=nocona -O2 -pipe"
DISTDIR="/Users/mys_721tx/gentoo/usr/portage/distfiles"
FCFLAGS=""
FEATURES="assume-digests binpkg-logs collision-protect config-protect-if-modified distlocks ebuild-locks fixlafiles force-prefix merge-sync news nostrip parallel-fetch preserve-libs protect-owned sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS=""
GENTOO_MIRRORS="http://ftp.ucsb.edu/pub/mirrors/linux/gentoo/ ftp://ftp.ucsb.edu/pub/mirrors/linux/gentoo/"
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-dead_strip_dylibs"
MAKEOPTS="-j2"
PKGDIR="/Users/mys_721tx/gentoo/usr/portage/packages"
PORTAGE_CONFIGROOT="/Users/mys_721tx/gentoo/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/Users/mys_721tx/gentoo/var/tmp"
PORTDIR="/Users/mys_721tx/gentoo/usr/portage"
PORTDIR_OVERLAY="/Users/mys_721tx/gentoo/usr/local/portage"
SYNC="rsync://rsync.prefix.freens.org/gentoo-portage-prefix"
USE="aqua coreaudio cracklib cxx ipv6 mmx mmxext modules ncurses nls objc objc++ prefix readline sse sse2 ssl unicode x64-macos zlib" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="Darwin" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse" KERNEL="Darwin" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-3" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_2" RUBY_TARGETS="ruby19 ruby18" USERLAND="GNU" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Comment 1 Yishen Miao (mys_721tx) 2013-07-04 22:33:48 UTC
Created attachment 352626 [details]
build.log for dev-lang/R-3.0.1

make[3]: Entering directory `/Users/mys_721tx/gentoo/var/tmp/portage/dev-lang/R-3.0.1/work/R-3.0.1/src/library/datasets'
building package 'datasets'
mkdir -p -- ../../../library/datasets
make[4]: Entering directory `/Users/mys_721tx/gentoo/var/tmp/portage/dev-lang/R-3.0.1/work/R-3.0.1/src/library/datasets'
make[4]: Leaving directory `/Users/mys_721tx/gentoo/var/tmp/portage/dev-lang/R-3.0.1/work/R-3.0.1/src/library/datasets'
mkdir -p -- ../../../library/datasets/data
Error in load(zfile, envir = envir) : 
  3 arguments passed to .Internal(loadFromConn2) which requires 2
Calls: <Anonymous> -> <Anonymous> -> load
Execution halted
make[3]: *** [all] Error 1
Comment 2 Yishen Miao (mys_721tx) 2013-09-08 01:28:42 UTC
This can be solved by unmerge dev-lang/R-3.0.0 and the do a fresh install for dev-lang/R-3.0.1.
Comment 3 Denis Dupeyron (RETIRED) gentoo-dev 2016-05-08 15:12:14 UTC
(In reply to Yishen Miao (mys_721tx) from comment #2)
> This can be solved by unmerge dev-lang/R-3.0.0 and the do a fresh install
> for dev-lang/R-3.0.1.

Sorry for the late reaction to this, it went under my radar. It seems the problem was fixed by upstream at some point and those versions are no longer in the tree anyway. I'm closing this but do not hesitate to reopen if needed.