'emerge opencascade' hangs for about one hour at: * Removing unnecessary /usr/lib64/opencascade-6.6.0/ros/lin/lib64/libTKSTEPAttr.la (no static archive) * Removing unnecessary /usr/lib64/opencascade-6.6.0/ros/lin/lib64/libTKXDEIGES.la (no static archive) * Removing unnecessary /usr/lib64/opencascade-6.6.0/ros/lin/lib64/libTKXCAFSchema.la (no static archive) root@lynx:/root(10)# ps -ef | grep portage root 7997 12110 0 08:13 pts/1 00:00:00 [sci-libs/opencascade-6.6.0] sandbox "/var/tmp/portage/._portage_reinstall_.SbEHKr/bin/ebuild.sh" install root 7998 7997 0 08:13 pts/1 00:00:00 /bin/bash /var/tmp/portage/._portage_reinstall_.SbEHKr/bin/ebuild.sh install root 8020 7998 0 08:13 pts/1 00:00:00 /bin/bash /var/tmp/portage/._portage_reinstall_.SbEHKr/bin/ebuild.sh install root 12701 30786 0 08:57 pts/1 00:00:00 /usr/bin/python2.7 /var/tmp/portage/._portage_reinstall_.SbEHKr/bin/install.py -m0644 ReferenceDocumentation/html/search/defines_68.html /var/tmp/portage/sci-libs/opencascade-6.6.0/image//usr/share/doc/opencascade-6.6.0/ReferenceDocumentation/html/search root 12705 27358 0 08:57 pts/3 00:00:00 grep --colour=auto portage root 29032 8020 0 08:16 pts/1 00:00:00 /bin/bash /var/tmp/portage/._portage_reinstall_.SbEHKr/bin/ebuild-helpers/doins -r doc/overview doc/ReferenceDocumentation root 30786 29032 0 08:17 pts/1 00:00:22 /bin/bash /var/tmp/portage/._portage_reinstall_.SbEHKr/bin/ebuild-helpers/doins -r doc/overview doc/ReferenceDocumentation root@lynx:/root(12)# genlop -c Currently merging 9 out of 33 * sci-libs/opencascade-6.6.0 current merge time: 1 hour, 40 minutes and 11 seconds. ETA: any time now. root@lynx:/root(13)# genlop -t opencascade | tail Mon Nov 14 14:10:57 2011 >>> sci-libs/opencascade-6.5 merge time: 1 hour, 4 minutes and 33 seconds. Sat Jan 19 16:35:25 2013 >>> sci-libs/opencascade-6.5 merge time: 1 hour, 3 minutes and 19 seconds. Sun Apr 28 08:16:28 2013 >>> sci-libs/opencascade-6.5.5 merge time: 1 hour, 14 minutes and 52 seconds. root@lynx:/root(14)# emerge --info =opencascade-6.6.0 Portage 2.1.12.9 (default/linux/amd64/13.0/desktop, gcc-4.7.3, glibc-2.17, 3.9.7-gentoo x86_64) ================================================================= System Settings ================================================================= System uname: Linux-3.9.7-gentoo-x86_64-Intel-R-_Core-TM-2_Duo_CPU_T8300_@_2.40GHz-with-gentoo-2.2 KiB Mem: 3988192 total, 56204 free KiB Swap: 12582908 total, 12265224 free Timestamp of tree: Mon, 24 Jun 2013 23:00:01 +0000 ld GNU ld (GNU Binutils) 2.23.1 distcc 3.1 x86_64-pc-linux-gnu [disabled] app-shells/bash: 4.2_p45 dev-java/java-config: 2.2.0 dev-lang/python: 2.7.5, 3.2.5, 3.3.2 dev-util/cmake: 2.8.11.1 dev-util/pkgconfig: 0.28 sys-apps/baselayout: 2.2 sys-apps/openrc: 0.11.8 sys-apps/sandbox: 2.6-r1 sys-devel/autoconf: 2.13, 2.69 sys-devel/automake: 1.9.6-r3, 1.10.3, 1.11.6, 1.12.6, 1.13.4, 1.14 sys-devel/binutils: 2.23.1 sys-devel/gcc: 4.6.4, 4.7.3 sys-devel/gcc-config: 1.8 sys-devel/libtool: 2.4.2 sys-devel/make: 3.82-r4 sys-kernel/linux-headers: 3.9 (virtual/os-headers) sys-libs/glibc: 2.17 Repositories: gentoo x11 sage-on-gentoo science sunrise lordvan sabayon local x-cpan g-octave Installed sets: @system ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* -@EULA PUEL Intel-SDP dlj-1.1 skype-eula skype-4.0.0.7-copyright googleearth AdobeFlash-11.x cadsoft Oracle-BCLA-JavaSE MakeMKV-EULA" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.3/ext-active/ /etc/php/apache2-php5.5/ext-active/ /etc/php/cgi-php5.3/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cli-php5.3/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/usr/portage/distfiles" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news noclean nostrip parallel-fetch preserve-libs protect-owned sandbox sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch xattr" FFLAGS="-march=native -O2 -pipe" GENTOO_MIRRORS="http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror http://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/ ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo ftp://ftp.tu-clausthal.de/pub/linux/gentoo ftp://ftp.easynet.nl/mirror/gentoo/ " LANG="en_US.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j3" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/var/lib/layman/x11 /var/lib/layman/sage-on-gentoo /var/lib/layman/science /var/lib/layman/sunrise /var/lib/layman/lordvan /var/lib/layman/sabayon /usr/local/portage /var/lib/cpan /var/lib/g-octave" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="64bit R X Xaw3d a52 aac acl acpi admin afs alsa amd64 ao apache2 apng applet archive armadillo arpack asf aspell atlas audacious audiofile automap automount bash-completion berkdb blas blast bluetooth bluray boost branding bzip2 cairo cdda cddb cdf cdio cdparanoia cdr cg cgi chm cli cmake consolekit cracklib crypt css cuda cups curl cxx daap db dbi dbm dbus declarative designer devhelp device-mapper dga dia dirac djvu doc dot dri ds2490 ds9097 ds9097u dts dv dvb dvd dvdr dvi dynamicplugin eds egl elf emacs emboss emf encode epiphany evo examples exif expat extensions extra extras faac faad fam ffmpeg fftw firefox fits flac fltk fontconfig foomaticdb fortran fortran95 fpm fpx fuse g3dvl garmin gcj gd gdal gdbm gdu gedit geoip geolocation geos gfortran gif gimp git glade glib glpk gml gmp gnome gnome-keyring gnome-print gnuplot gnutls gold gphoto2 gpm grammar graphics graphtft graphviz grass gsl gsm gstreamer gtk gtk3 gudev guile hddtemp hdf hdf5 hdri html http httpd hvm hwdb iconv icq icu id3 id3tag ide imagemagick imap inotify introspection ipod ipv6 irda ithreads jabber jadetex java java6 jbig john jpeg jpeg2k kate kdepim kdrive kerberos keymap kpathsea kvm ladspa lame lapack laptop latex lcms ldap lensfun libffi libkms libnotify libsamplerate lirc live lua lzo mad mail maildir mapnik math matroska media-library mercurial mikmod mkl mmx mmxext mng mod modules mono motif mozilla mp3 mp4 mpeg mpi mplayer mtp mudflap multilib multimedia musepack musicbrainz mysql mysqli nautilus ncurses neXt netcdf netpbm network networking nfs nls nntp nptl nsplugin ntfs ntp numpy obex objc ocaml ocr octave odbc ofa ogdi ogg openexr opengl openmp pam pango pcre pda pdf perl plasma plotutils plugins png podcast policykit portaudio posix postgres postscript ppds preview-latex proj projectm projectx pstricks pulseaudio python python-bindings q16 q32 qemu qhull qt3support qt4 quicktime raw readline real reiserfs reports rhythmbox rle romio rpc rrdcgi rrdtool sage samba sasl schroedinger science sdk sdl secure-delete semantic-desktop server session shout sip slang slp smart smbclient smp sms sndfile snmp soap sockets sound soup sox speex spell sql sqlite sse sse2 sse4 ssl ssse3 startup-notification stlport subtitles subversion sudo suexec svg svm swig szip t1lib tcl tcpd tex tex4ht texmacs tgif theora thesaurus thinkpad threads thunderbird tidy tiff tk tools truetype udev udisks unicode upower usb userlocales utempter v4l vaapi vala valgrind vdpau video virt-network virtualbox visio vorbis vpx wav webdav webdav-serf webkit wifi wmf wxwidgets x264 xa xattr xcb xemacs xetex xext xft xine xml xmlreader xmlrpc xpm xv xvid xvmc yaml youtube zlib zvbi" ABI_X86="64" ALSA_CARDS="intel8x0" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_core authn_dbm authn_default authn_file authz_core authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info lbmethod_byrequests log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif slotmem_shm so socache_shmcb speling status unique_id unixd userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="canon fuji ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CURL_SSL="nss" DRACUT_MODULES="caps lvm syslog" DVB_CARDS="usb-wt220u" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev synaptics void" KERNEL="linux" LCD_DEVICES="cfontz hd44780 mtxorb ncurses X lcd2usb lcdlinux png usblcd" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="de fr ru" NETBEANS_MODULES="apisupport cnd dlight enterprise ergonomics groovy gsf harness ide identity j2ee java mobility nb php profiler ruby websvccommon xml" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-3" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_2" QEMU_SOFTMMU_TARGETS="arm i386 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby19 ruby18" USERLAND="GNU" VIDEO_CARDS="nouveau displaylink" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
If I try it once more, 'emerge opencascade' hangs exactly at the same point.
Could it be, that this issue is connected with FEATURES="splitdebug noclean nostrip" ? At least after adding this FEATURE line to make.conf the next system is hanging for more than a half hour at * Removing unnecessary /usr/lib64/opencascade-6.6.0/ros/lin/lib64/libTKTopTest.la (no static archive) * Removing unnecessary /usr/lib64/opencascade-6.6.0/ros/lin/lib64/libTKGeomAlgo.la (no static archive)
Top shows that doins is using the CPU but it is mainly sleeping: top - 16:13:55 up 4 days, 2:59, 16 users, load average: 1.22, 1.37, 1.61 Tasks: 264 total, 1 running, 263 sleeping, 0 stopped, 0 zombie %Cpu(s): 25.2 us, 11.8 sy, 0.0 ni, 62.7 id, 0.3 wa, 0.0 hi, 0.1 si, 0.0 st KiB Mem: 8165512 total, 7819764 used, 345748 free, 268184 buffers KiB Swap: 50347696 total, 292360 used, 50055336 free, 2659636 cached PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND 26918 rose 20 0 2841048 1.082g 22360 S 19.95 13.89 534:00.66 gnome-shell 27591 rose 0 0 2143336 556168 25608 S 12.97 6.811 303:21.99 firefox 26117 root 20 0 333828 192984 4976 S 11.30 2.363 195:31.99 Xorg 9290 root 20 0 56516 6276 2208 S 1.330 0.077 0:00.04 python2.7 14434 root 20 0 21380 2088 516 S 1.330 0.026 0:33.57 doins 10968 rose 0 0 78564 8440 2128 S 0.997 0.103 0:05.40 xterm 10 root 20 0 0 0 0 S 0.665 0.000 9:41.11 rcu_sched 4806 root 20 0 26144 1788 1116 R 0.665 0.022 0:00.66 top 10986 rose 20 0 41976 2136 992 S 0.332 0.026 0:06.86 ssh root@impala:/var/tmp/portage/app-office/libreoffice-4.1.0.1/work/libreoffice-4.1.0.1(138)# ps -ef | grep doins | grep -v grep root 12681 23702 0 15:33 pts/7 00:00:00 /bin/bash /usr/lib64/portage/bin/ebuild-helpers/doins -r doc/overview doc/ReferenceDocumentation root 14434 12681 1 15:34 pts/7 00:00:37 /bin/bash /usr/lib64/portage/bin/ebuild-helpers/doins -r doc/overview doc/ReferenceDocumentation Any idea, what here could happen?
If I monitor the changes under /var/tmp/portage/sci-libs/opencascade-6.6.0/ with 'du -s", I see that only one dirctory is continously growing: root@impala:/var/tmp/portage/app-office/libreoffice-4.1.0.1/work/libreoffice-4.1.0.1(151)# du -s /var/tmp/portage/sci-libs/opencascade-6.6.0/image/usr/share/doc/opencascade-6.6.0/ReferenceDocumentation/* ; date 434053 /var/tmp/portage/sci-libs/opencascade-6.6.0/image/usr/share/doc/opencascade-6.6.0/ReferenceDocumentation/html Wed Jun 26 16:23:12 CEST 2013 ... root@impala:/var/tmp/portage/app-office/libreoffice-4.1.0.1/work/libreoffice-4.1.0.1(155)# du -s /var/tmp/portage/sci-libs/opencascade-6.6.0/image/usr/share/doc/opencascade-6.6.0/ReferenceDocumentation/* ; date 464435 /var/tmp/portage/sci-libs/opencascade-6.6.0/image/usr/share/doc/opencascade-6.6.0/ReferenceDocumentation/html Wed Jun 26 16:27:51 CEST 2013 ... root@impala:/var/tmp/portage/app-office/libreoffice-4.1.0.1/work/libreoffice-4.1.0.1(161)# du -s /var/tmp/portage/sci-libs/opencascade-6.6.0/image/usr/share/doc/opencascade-6.6.0/ReferenceDocumentation/* ; date 513975 /var/tmp/portage/sci-libs/opencascade-6.6.0/image/usr/share/doc/opencascade-6.6.0/ReferenceDocumentation/html 4 /var/tmp/portage/sci-libs/opencascade-6.6.0/image/usr/share/doc/opencascade-6.6.0/ReferenceDocumentation/index.html Wed Jun 26 16:36:57 CEST 2013 So after waiting for increasing the size of /var/tmp/portage/sci-libs/opencascade-6.6.0/image/usr/share/doc/opencascade-6.6.0/ReferenceDocumentation over 513 MB, emerge proceeds. I.e, maybe I was not waiting enough when writing my last bug reports.
