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Bug 471038 - app-admin/eselect-java-0.1.0 subject to spurious entries
Summary: app-admin/eselect-java-0.1.0 subject to spurious entries
Status: RESOLVED OBSOLETE
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: [OLD] Java (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Java team
URL: http://forums.gentoo.org/viewtopic-t-...
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2013-05-22 23:13 UTC by Guy
Modified: 2014-05-21 22:58 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


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Description Guy 2013-05-22 23:13:14 UTC
Consider:

# eselect java-vm list
Available Java Virtual Machines:
grep: /usr/share/java-config-2/vm/blackdown-jdk-1.4.2: No such file or directory
grep: /usr/share/java-config-2/vm/sun-jdk-1.5: No such file or directory
grep: /usr/share/java-config-2/vm/sun-jdk-1.6: No such file or directory
  [1]   blackdown-jdk-1.4.2
  [2]   emul-linux-x86-java-1.6
  [3]   icedtea-bin-6
  [4]   icedtea-bin-7  system-vm
  [5]   sun-jdk-1.5
  [6]   sun-jdk-1.6

Entries 1, 5 and 6 were all properly unmerged using:

# emerge -C {package-name}

and therefore no longer exist on my systems.

These entries simply appear to be left over artifacts. Other than the visual annoyance, there doesn't appear to be any method of removing them. I did try to unmerge "eselect-java" and re-emerge it in an effort to force regeneration of the list of availabel java machines but that was unsuccessful. The old entries remained.

Note that I have multiple PCs with this issue.
Comment 1 Ralph Sennhauser (RETIRED) gentoo-dev 2013-05-24 20:23:24 UTC
That means you have orphaned symlinks in /usr/lib/jvm/. They should have been uninstalled together with the respective jvm.

If you uninstall icedtea-bin-6 for instance, does it still leave a symlink behind as the others did probably long ago?
Comment 2 Guy 2013-05-25 02:08:07 UTC
(In reply to comment #1)
> That means you have orphaned symlinks in /usr/lib/jvm/. They should have
> been uninstalled together with the respective jvm.
> 
> If you uninstall icedtea-bin-6 for instance, does it still leave a symlink
> behind as the others did probably long ago?

With your question as a clue, I looked at:

# ls -l /usr/lib/jvm
total 0
lrwxrwxrwx 1 root root 27 Jul  6  2010 blackdown-jdk-1.4.2 -> /opt/blackdown-jdk-1.4.2.03
lrwxrwxrwx 1 root root 33 Apr 20 21:38 emul-linux-x86-java-1.6 -> /opt/emul-linux-x86-java-1.6.0.45
lrwxrwxrwx 1 root root 25 May 22 20:47 icedtea-bin-6 -> /opt/icedtea-bin-6.1.12.4
lrwxrwxrwx 1 root root 24 May  1 06:11 icedtea-bin-7 -> /opt/icedtea-bin-7.2.3.9
lrwxrwxrwx 1 root root 21 Jul  6  2010 sun-jdk-1.5 -> /opt/sun-jdk-1.5.0.21
lrwxrwxrwx 1 root root 21 Sep  2  2011 sun-jdk-1.6 -> /opt/sun-jdk-1.6.0.27

# ls -l /opt
total 88
drwxr-xr-x 4 root root 4096 Nov 30  2011 Adobe
drwxr-xr-x 2 root root 4096 Aug 25  2010 REALbasic2009r5
drwxr-xr-x 2 root root 4096 Apr 27 23:56 bin
drwxr-xr-x 3 root root 4096 Nov  2  2009 blackdown-jdk-1.4.2.03
drwxr-xr-x 3 root root 4096 Oct 10  2009 emul-linux-x86-java-1.6.0.06
drwxr-xr-x 3 root root 4096 Jul 27  2010 emul-linux-x86-java-1.6.0.20
drwxr-xr-x 5 root root 4096 Apr 20 21:38 emul-linux-x86-java-1.6.0.45
drwxr-xr-x 3 root root 4096 Apr  5  2011 firefox
drwxr-xr-x 7 root root 4096 May 22 20:47 icedtea-bin-6.1.12.4
drwxr-xr-x 7 root root 4096 May  1 06:11 icedtea-bin-7.2.3.9
drwxr-xr-x 5 root root 4096 May 22 20:47 icedtea-web-bin-6
drwxr-xr-x 5 root root 4096 Nov 25  2011 icedtea-web-bin-7
drwxr-xr-x 3 root root 4096 Jul 31  2011 icedtea6-bin-1.10.2
drwxr-xr-x 3 root root 4096 Aug  6  2010 icedtea6-bin-1.8.0
drwxr-xr-x 3 root root 4096 Jul 27  2010 netscape
drwxr-xr-x 2 root root 4096 Jul 14  2012 rar
drwxr-xr-x 4 root root 4096 Dec  1  2009 seamonkey
drwxr-xr-x 4 root root 4096 May  2  2012 stuffit
drwxr-xr-x 3 root root 4096 Oct 23  2009 sun-jdk-1.5.0.18
drwxr-xr-x 3 root root 4096 Aug 20  2011 sun-jdk-1.5.0.21
drwxr-xr-x 3 root root 4096 Jun  5  2009 sun-jdk-1.6.0.13
drwxr-xr-x 3 root root 4096 Jul 27  2010 sun-jdk-1.6.0.20

# du --max-depth=1 /opt
8	/opt/sun-jdk-1.5.0.21
126608	/opt/icedtea-bin-6.1.12.4
173644	/opt/Adobe
66244	/opt/icedtea-bin-7.2.3.9
332	/opt/seamonkey
8	/opt/icedtea6-bin-1.10.2
744	/opt/rar
8	/opt/blackdown-jdk-1.4.2.03
8	/opt/emul-linux-x86-java-1.6.0.06
8	/opt/REALbasic2009r5
8	/opt/sun-jdk-1.5.0.18
316	/opt/bin
123184	/opt/emul-linux-x86-java-1.6.0.45
16	/opt/firefox
8	/opt/sun-jdk-1.6.0.20
8	/opt/sun-jdk-1.6.0.13
888	/opt/icedtea-web-bin-6
8	/opt/icedtea6-bin-1.8.0
896	/opt/icedtea-web-bin-7
8	/opt/emul-linux-x86-java-1.6.0.20
184	/opt/netscape
5892	/opt/stuffit
499032	/opt


As you can see, this system is at least 4 years old. Over time, I appear to have accumulated quite a few artifacts. As I see it, every /opt directory which has 8 blocks allocated should probably be removed.

I'm assuming it's safe to manually remove both the orghaned symlinks as well as the essentially empty /opt/{java vm}.

To my best memory of events, I've always properly (at the time) unmerged older vms as per various notices. As an enduser, I'm not sure how you want to or should handle this. Perhaps eselect-java can be made smart enough to issue a warning to the effect: "Artifacts left from previous unmerged java vms found. Do you want to remove these artifacts?"

On the other hand, perhaps a new function can be added to eclean such as 'eclean-cruft' where empty directories in places like /opt exist and broken symlinks can be found and removed. As I am beginning to see it, this is more properly a cruft issue and might be better treated as such. If such a function is already available, I'd love to be clued in!

Something to think about anyway.

Back to my issue: If someone tells me it's safe to manually remove the broken symlinks and the empty /opt/{java-vm} directories, then you can close this bug/request or convert it into something that makes more sense to you.

If someone wants to look at this more closely and would like me to test some kind of automated process, I can leave as is and test as needed. I do have layman installed and am comfortable with loading packages into /usr/local/portage/
Comment 3 Guy 2013-05-25 02:16:41 UTC
BTW - I did uninstall icedtea-bin-6 and the related entry dissapeared. 

However, it was re-installed during an 'emerge @world'. I think this was because =virtual/jdk-1.6.0-r1 is still installed on these systems. I'm assuming I don't actually need =virtual/jdk-1.6.0-r1 anymore and can perform: emerge -C =virtual/jdk-1.6.0-r1.
Comment 4 Ralph Sennhauser (RETIRED) gentoo-dev 2013-05-25 14:15:28 UTC
You can manually delete those orphaned files. They should have been removed by Portage anyway. As you can no longer reproduce the issue with current Portage I presume the issue got fixed at some point or you did something to that directory manually before and Portage left those files for having been modified.

Personally I think doing the cleanup / issuing a warning in java-check-environment instead of eselect java-vm would be preferable tho.
Comment 5 Guy 2013-05-26 02:50:33 UTC
(In reply to Ralph Sennhauser from comment #4)
> You can manually delete those orphaned files. They should have been removed
> by Portage anyway. As you can no longer reproduce the issue with current
> Portage I presume the issue got fixed at some point or you did something to
> that directory manually before and Portage left those files for having been
> modified.
> 
> Personally I think doing the cleanup / issuing a warning in
> java-check-environment instead of eselect java-vm would be preferable tho.

I'm going to manually clean up the broken symlinks and remove all the empty directories. 

Of all the empty directories under /opt, only the REAL subdirectory had a manual change by me. That was to enter a temporary license. All the other empty directories should have been deleted by Portage.

Your suggestion that warning/cleanup should be done at java-check-environment is a good one. I'm not a programmer so it won't be me volunteering for that effort.

;)

In the meantime, if anyone else notices the same cruft and finds this report, they'll know to do a manual cleanup as well.

Please feel free to either close this bug or re-purpose it to a request to add a clean up function where appropriate.

Thank you for your help!