Gentoo Websites Logo
Go to: Gentoo Home Documentation Forums Lists Bugs Planet Store Wiki Get Gentoo!
Bug 462322 - dev-python/docutils: rst2html.py runtime error (tries to call easy_install)
Summary: dev-python/docutils: rst2html.py runtime error (tries to call easy_install)
Status: RESOLVED INVALID
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: New packages (show other bugs)
Hardware: AMD64 Linux
: Normal normal
Assignee: Python Gentoo Team
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2013-03-19 14:57 UTC by John Hawk
Modified: 2013-03-20 16:12 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments

Note You need to log in before you can comment on or make changes to this bug.
Description John Hawk 2013-03-19 14:57:06 UTC
Access denied when trying to emerge eselect.
Here is the gentoo forum post:

http://forums.gentoo.org/viewtopic-p-7271350.html#7271350

Log:

ACCESS DENIED  open_wr:      /usr/lib64/python2.7/site-packages/test-easy-install-13632.write-test 
error: can't create or remove files in install directory 

The following error occurred while trying to add or remove files in the 
installation directory: 

    [Errno 13] Permission denied: '/usr/lib64/python2.7/site-packages/test-easy-install-13632.write-test' 

The installation directory you specified (via --install-dir, --prefix, or 
the distutils default setting) was: 

    /usr/lib64/python2.7/site-packages/ 

Perhaps your account does not have write access to this directory?  If the 
installation directory is a system-owned directory, you may need to sign in 
as the administrator or "root" account.  If you do not have administrative 
access to this machine, you may wish to choose a different installation 
directory, preferably one that is listed in your PYTHONPATH environment 
variable. 

For information on other options, you may wish to consult the 
documentation at: 

  http://packages.python.org/distribute/easy_install.html 

Please make the appropriate changes for your system and try again. 

ACCESS DENIED  open_wr:      /usr/lib64/python2.7/site-packages/test-easy-install-13631.write-test 
error: can't create or remove files in install directory 

The following error occurred while trying to add or remove files in the 
installation directory: 

    [Errno 13] Permission denied: '/usr/lib64/python2.7/site-packages/test-easy-install-13631.write-test' 

The installation directory you specified (via --install-dir, --prefix, or 
the distutils default setting) was: 

    /usr/lib64/python2.7/site-packages/ 

Perhaps your account does not have write access to this directory?  If the 
installation directory is a system-owned directory, you may need to sign in 
as the administrator or "root" account.  If you do not have administrative 
access to this machine, you may wish to choose a different installation 
directory, preferably one that is listed in your PYTHONPATH environment 
variable. 

For information on other options, you may wish to consult the 
documentation at: 

  http://packages.python.org/distribute/easy_install.html 

Please make the appropriate changes for your system and try again. 

make: *** [TODO.html] Error 1 
make: *** Waiting for unfinished jobs.... 
make: *** [README.html] Error 1 
 * ERROR: app-admin/eselect-1.3.4 failed (compile phase): 
 *   emake failed 
 * 
 * If you need support, post the output of `emerge --info '=app-admin/eselect-1.3.4'`, 
 * the complete build log and the output of `emerge -pqv '=app-admin/eselect-1.3.4'`. 
 * The complete build log is located at '/var/tmp/portage/app-admin/eselect-1.3.4/temp/build.log'. 
 * The ebuild environment file is located at '/var/tmp/portage/app-admin/eselect-1.3.4/temp/environment'. 
 * Working directory: '/var/tmp/portage/app-admin/eselect-1.3.4/work/eselect-1.3.4' 
 * S: '/var/tmp/portage/app-admin/eselect-1.3.4/work/eselect-1.3.4' 
--------------------------- ACCESS VIOLATION SUMMARY --------------------------- 
LOG FILE "/var/log/sandbox/sandbox-13557.log" 

VERSION 1.0 
FORMAT: F - Function called 
FORMAT: S - Access Status 
FORMAT: P - Path as passed to function 
FORMAT: A - Absolute Path (not canonical) 
FORMAT: R - Canonical Path 
FORMAT: C - Command Line 

F: open_wr 
S: deny 
P: /usr/lib64/python2.7/site-packages/test-easy-install-13632.write-test 
A: /usr/lib64/python2.7/site-packages/test-easy-install-13632.write-test 
R: /usr/lib64/python2.7/site-packages/test-easy-install-13632.write-test 
C: /usr/bin/python2.7 /usr/bin/rst2html.py 

F: open_wr 
S: deny 
P: /usr/lib64/python2.7/site-packages/test-easy-install-13631.write-test 
A: /usr/lib64/python2.7/site-packages/test-easy-install-13631.write-test 
R: /usr/lib64/python2.7/site-packages/test-easy-install-13631.write-test 
C: /usr/bin/python2.7 /usr/bin/rst2html.py 
-------------------------------------------------------------------------------- 

>>> Failed to emerge app-admin/eselect-1.3.4, Log file: 

>>>  '/var/tmp/portage/app-admin/eselect-1.3.4/temp/build.log' 

 * Messages for package app-admin/eselect-1.3.4: 

 * ERROR: app-admin/eselect-1.3.4 failed (compile phase): 
 *   emake failed 
 * 
 * If you need support, post the output of `emerge --info '=app-admin/eselect-1.3.4'`, 
 * the complete build log and the output of `emerge -pqv '=app-admin/eselect-1.3.4'`. 
 * The complete build log is located at '/var/tmp/portage/app-admin/eselect-1.3.4/temp/build.log'. 
 * The ebuild environment file is located at '/var/tmp/portage/app-admin/eselect-1.3.4/temp/environment'. 
 * Working directory: '/var/tmp/portage/app-admin/eselect-1.3.4/work/eselect-1.3.4' 
 * S: '/var/tmp/portage/app-admin/eselect-1.3.4/work/eselect-1.3.4'

info for debug:

gaia python2.7 # emerge --info '=app-admin/eselect-1.3.4' 
Portage 2.1.11.52 (hardened/linux/amd64, gcc-4.5.4, glibc-2.15-r3, 3.4.5-hardened x86_64) 
================================================================= 
                        System Settings 
================================================================= 
System uname: Linux-3.4.5-hardened-x86_64-Intel-R-_Xeon-R-_CPU_X5650_@_2.67GHz-with-gentoo-2.1 
KiB Mem:     3788368 total,    664508 free 
KiB Swap:     524284 total,    524164 free 
Timestamp of tree: Mon, 18 Mar 2013 06:15:01 +0000 
ld GNU ld (GNU Binutils) 2.22 
app-shells/bash:          4.2_p37 
dev-lang/python:          2.7.3-r2, 3.2.3 
dev-util/cmake:           2.8.9 
dev-util/pkgconfig:       0.28 
sys-apps/baselayout:      2.1-r1 
sys-apps/openrc:          0.11.8 
sys-apps/sandbox:         2.5 
sys-devel/autoconf:       2.69 
sys-devel/automake:       1.11.6 
sys-devel/binutils:       2.22-r1 
sys-devel/gcc:            4.5.4, 4.6.3 
sys-devel/gcc-config:     1.7.3 
sys-devel/libtool:        2.4-r1 
sys-devel/make:           3.82-r4 
sys-kernel/linux-headers: 3.6 (virtual/os-headers) 
sys-libs/glibc:           2.15-r3 
Repositories: gentoo 
ACCEPT_KEYWORDS="amd64" 
ACCEPT_LICENSE="*" 
CBUILD="x86_64-pc-linux-gnu" 
CFLAGS="-march=core2 -mtune=generic -O2 -pipe" 
CHOST="x86_64-pc-linux-gnu" 
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" 
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.4/ext-active/ /etc/php/cgi-php5.4/ext-active/ /etc/php/cli-php5.4/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" 
CXXFLAGS="-march=core2 -mtune=generic -O2 -pipe" 
DISTDIR="/usr/portage/distfiles" 
FCFLAGS="-O2 -pipe" 
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch xattr" 
FFLAGS="-O2 -pipe" 
GENTOO_MIRRORS="http://mirror.switch.ch/ftp/mirror/gentoo/" 
LANG="fr_CH.UTF-8" 
LDFLAGS="-Wl,-O1 -Wl,--as-needed" 
MAKEOPTS="-j3" 
PKGDIR="/usr/portage/packages" 
PORTAGE_CONFIGROOT="/" 
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" 
PORTAGE_TMPDIR="/var/tmp" 
PORTDIR="/usr/portage" 
PORTDIR_OVERLAY="" 
SYNC="rsync://rsync.fr.gentoo.org/gentoo-portage" 
USE="acl amd64 apache2 bash-completion berkdb bzip2 cli cracklib crypt curl cxx dba doc dri exif expat gd gdbm gpm hardened iconv imagemagick jpeg justify mmx modules mudflap multilib mysql ncurses nls nptl openmp pam pax_kernel pcre python readline session sse sse2 ssl ssse3 tcpd unicode urandom vhosts xml zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en" PHP_TARGETS="php5-3" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_2" RUBY_TARGETS="ruby18 ruby19" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" 
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON 

gaia python2.7 #
Comment 1 Denis M. (Phr33d0m) 2013-03-19 15:19:17 UTC
Could you run `python-updater -eall`? Does it try to recompile packages?
What is your system python `eselect python list`?
What version of dev-python/setuptools do you have? I assume 0.6.30-r1? If I'm correct try upgrading it to 0.6.33 and try again.
Comment 2 John Hawk 2013-03-19 16:04:03 UTC
Available Python interpreters:
  [1]   python2.7 *
  [2]   python3.2

I'm launching the python-updater now...
-----

dummys@gaia ~ $ eix dev-python/setuptools
[I] dev-python/setuptools  0.6.30-r1
Comment 3 John Hawk 2013-03-19 18:05:22 UTC
Ok I've done all the action without success.
Same error...

In fact i've done : 

- python-updater -eall // all is up to date
- upgrading successfully to setuptools 0.6.33
- emerge -auDNv world

* ERROR: app-admin/eselect-1.3.4 failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=app-admin/eselect-1.3.4'`,
 * the complete build log and the output of `emerge -pqv '=app-admin/eselect-1.3.4'`.
 * The complete build log is located at '/var/tmp/portage/app-admin/eselect-1.3.4/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/app-admin/eselect-1.3.4/temp/environment'.
 * Working directory: '/var/tmp/portage/app-admin/eselect-1.3.4/work/eselect-1.3.4'
 * S: '/var/tmp/portage/app-admin/eselect-1.3.4/work/eselect-1.3.4'

>>> Failed to emerge app-admin/eselect-1.3.4, Log file:

>>>  '/var/tmp/portage/app-admin/eselect-1.3.4/temp/build.log'

 * Messages for package app-admin/eselect-1.3.4:

 * ERROR: app-admin/eselect-1.3.4 failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=app-admin/eselect-1.3.4'`,
 * the complete build log and the output of `emerge -pqv '=app-admin/eselect-1.3.4'`.
 * The complete build log is located at '/var/tmp/portage/app-admin/eselect-1.3.4/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/app-admin/eselect-1.3.4/temp/environment'.
 * Working directory: '/var/tmp/portage/app-admin/eselect-1.3.4/work/eselect-1.3.4'
 * S: '/var/tmp/portage/app-admin/eselect-1.3.4/work/eselect-1.3.4'
Comment 4 Ulrich Müller gentoo-dev 2013-03-19 18:06:42 UTC
You may try updating or remerging dev-python/docutils.
Comment 5 John Hawk 2013-03-19 18:08:30 UTC
Hmm perhaps there is a problem between setuptools-0.6.33 and eselect, as I seen on the error, python install of eselect is asking for 0.6.30:

pkg_resources.DistributionNotFound: distribute==0.6.30
Comment 6 John Hawk 2013-03-19 18:12:47 UTC
re-emerging dev-python/docutils

same problem...
Comment 7 Ulrich Müller gentoo-dev 2013-03-19 18:17:40 UTC
Can you invoke rst2html.py manually? (Just try "rst2html.py /dev/null", it should output some html code to stdout.)
Comment 8 John Hawk 2013-03-19 18:20:26 UTC
gaia python2.7 # rst2html.py /dev/null 
Processing null
error: Couldn't find a setup script in /dev/null
Comment 9 Ulrich Müller gentoo-dev 2013-03-19 18:29:37 UTC
Not a bug in eselect (it's just using rst2html.py for building its HTML documentation). Reassigning to python team.
Comment 10 John Hawk 2013-03-19 18:57:36 UTC
Yes seems to, when trying to cd in /var/tmp/portage/app-admin/eselect-1.3.4/work/eselect-1.3.4

and then :

gaia eselect-1.3.4 # /usr/bin/rst2html.py < TODO > TODO.html
error: No urls, filenames, or requirements specified (see --help)

So yes it's definitively a problem of rst2html.py
Because if I:

gaia eselect-1.3.4 # cat TODO.html 
gaia eselect-1.3.4 # 

There is no HTML outputed...
Comment 11 John Hawk 2013-03-19 18:59:21 UTC
Also checked my version of docutils, it's 0.10 (latest)
Comment 12 John Hawk 2013-03-19 19:06:17 UTC
Trying to downgrade to 0.9 version docutils, not working...
Comment 13 John Hawk 2013-03-20 15:41:58 UTC
Hi, no news on my Issue ??
Comment 14 Mike Gilbert gentoo-dev 2013-03-20 15:58:37 UTC
(In reply to comment #13)
> Hi, no news on my Issue ??

I can't reproduce the problem. You seem to be the only user having this issue so far. If you are able to diagnose the problem and point us at a specific bug, we can look into fixing it; otherwise, I have to assume this is some quirk in your system.

I recommend disabling USE=doc as a workaround.
Comment 15 John Hawk 2013-03-20 16:01:30 UTC
Hmm no I point to the bug, look my other comment.
I try to launch standalone the rst2html.py script and is not working on any files...

Here is the source code of rst2html.py:

#!/usr/bin/python2.7
# EASY-INSTALL-ENTRY-SCRIPT: 'distribute==0.6.35','console_scripts','easy_install'
__requires__ = 'distribute==0.6.35'
import sys
from pkg_resources import load_entry_point

if __name__ == '__main__':
    sys.exit(
        load_entry_point('distribute==0.6.35', 'console_scripts', 'easy_install')()
    )
~                                                                                                                                                                                     
~
Comment 16 John Hawk 2013-03-20 16:03:37 UTC
rst2html.py is a link to python-exec
Comment 17 Mike Gilbert gentoo-dev 2013-03-20 16:05:57 UTC
That doesn't look like the right code at all. Try re-installing python-exec.
Comment 18 John Hawk 2013-03-20 16:11:44 UTC
ohhhhhhhhhhhhh yeahhhh issue resolved after remerging python-exec.
Thanks a lot.
Regards,
John