After updating to 5.16.3, I got $ perl perl: error while loading shared libraries: libperl.so.5.16: cannot open shared object file: No such file or directory $ type -p perl /home/christoph/prefix/usr/bin/perl $ ldd $(type -p perl) linux-vdso.so.1 (0x00007fffe6381000) libperl.so.5.16 => not found libnsl.so.1 => /lib64/libnsl.so.1 (0x00007f2f4dd0b000) libdl.so.2 => /lib64/libdl.so.2 (0x00007f2f4db07000) libm.so.6 => /lib64/libm.so.6 (0x00007f2f4d818000) libcrypt.so.1 => /lib64/libcrypt.so.1 (0x00007f2f4d5e1000) libutil.so.1 => /lib64/libutil.so.1 (0x00007f2f4d3de000) libc.so.6 => /lib64/libc.so.6 (0x00007f2f4d036000) /lib64/ld-linux-x86-64.so.2 (0x00007f2f4df23000) $ scanelf -r $(type -p perl) TYPE RPATH FILE ET_EXEC - /home/christoph/prefix/usr/bin/perl $ emerge --info !!! Your current profile is deprecated and not supported anymore. !!! Use eselect profile to update your profile. !!! Please upgrade to the following profile if possible: default/linux/amd64/13.0/no-multilib Portage 2.2.01.21688-prefix (prefix/linux/amd64, gcc-4.7.2, unavailable, 3.7.10-gentoo x86_64) ================================================================= System uname: Linux-3.7.10-gentoo-x86_64-Intel-R-_Core-TM-_i7-3520M_CPU_@_2.90GHz-with-gentoo-2.1 KiB Mem: 7872992 total, 1325084 free KiB Swap: 8912892 total, 8912892 free Timestamp of tree: Thu, 14 Mar 2013 19:05:58 +0000 ld GNU ld (GNU Binutils) 2.23 ccache version 3.1.9 [disabled] app-shells/bash: 4.2_p39-r1::gentoo_prefix dev-lang/python: 2.7.3-r3::gentoo_prefix, 3.3.0-r1::gentoo_prefix dev-util/pkgconfig: 0.28::gentoo_prefix sys-devel/autoconf: 2.69::gentoo_prefix sys-devel/automake: 1.12.4::gentoo_prefix sys-devel/binutils: 2.23::gentoo_prefix sys-devel/gcc: 4.7.2::gentoo_prefix sys-devel/gcc-config: 1.8-r00.1::gentoo_prefix sys-devel/libtool: 2.4.2::gentoo_prefix sys-devel/make: 3.82-r4::gentoo_prefix sys-kernel/linux-headers: 3.8::gentoo_prefix (virtual/os-headers) Repositories: gentoo_prefix location: /home/christoph/prefix/usr/portage sync: rsync://rsync.prefix.freens.org/gentoo-portage-prefix priority: -1000 aliases: gentoo cj-overlay location: /var/lib/overlays/christoph masters: gentoo_prefix priority: 0 science location: /var/lib/overlays/science masters: gentoo_prefix priority: 1 ABI="amd64" ABI_X86="64" ACCEPT_KEYWORDS="~amd64-linux" ACCEPT_LICENSE="* -@EULA @EULA" ACCEPT_PROPERTIES="*" ALSA_CARDS="hda-intel" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ARCH="amd64" AUTOCLEAN="yes" BOOTSTRAP_USE="cxx unicode multilib multilib" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump" CAMERAS="ptp2" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -fomit-frame-pointer" CFLAGS_amd64="-m64" CFLAGS_x32="-mx32" CFLAGS_x86="-m32" CHOST="x86_64-pc-linux-gnu" CHOST_amd64="x86_64-pc-linux-gnu" CHOST_x32="x86_64-pc-linux-gnux32" CHOST_x86="i686-pc-linux-gnu" CLEAN_DELAY="5" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" COLLISION_IGNORE="/lib/modules/* *.py[co] *$py.class" CONFIGURE_EPREFIX="/home/christoph/prefix" CONFIG_PROTECT="/etc" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/revdep-rebuild /etc/terminfo" CVS_RSH="ssh" CXXFLAGS="-O2 -pipe" DEFAULT_ABI="default" DEFAULT_PATH="/home/christoph/prefix/usr/sbin:/home/christoph/prefix/usr/bin:/home/christoph/prefix/sbin:/home/christoph/prefix/bin" DISTDIR="/home/christoph/prefix/usr/portage/distfiles" ECHANGELOG_USER="Christoph Junghans <ottxor@gentoo.org>" EDITOR="/home/christoph/prefix/bin/nano" ELIBC="glibc" EMERGE_DEFAULT_OPTS="--verbose --with-bdeps=y --jobs=5 --load-average=5 --autounmask-write=y" EMERGE_WARNING_DELAY="10" EPREFIX="/home/christoph/prefix" EROOT="/home/christoph/prefix/" EXTRA_PATH="/usr/bin:/bin" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs collision-protect config-protect-if-modified distlocks ebuild-locks fixlafiles force-prefix merge-sync news parallel-fetch preserve-libs protect-owned sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch" FETCHCOMMAND="wget -t 3 -T 60 --passive-ftp -O "${DISTDIR}/${FILE}" "${URI}"" FETCHCOMMAND_RSYNC="rsync -avP "${URI}" "${DISTDIR}/${FILE}"" FETCHCOMMAND_SFTP="bash -c "x=\${2#sftp://} ; host=\${x%%/*} ; port=\${host##*:} ; host=\${host%:*} ; [[ \${host} = \${port} ]] && port=22 ; exec sftp -P \${port} \"\${host}:/\${x#*/}\" \"\$1\"" sftp "${DISTDIR}/${FILE}" "${URI}"" FETCHCOMMAND_SSH="bash -c "x=\${2#ssh://} ; host=\${x%%/*} ; port=\${host##*:} ; host=\${host%:*} ; [[ \${host} = \${port} ]] && port=22 ; exec rsync --rsh=\"ssh -p\${port}\" -avP \"\${host}:/\${x#*/}\" \"\$1\"" rsync "${DISTDIR}/${FILE}" "${URI}"" FFLAGS="-O2 -pipe" GCC_SPECS="" GENTOO_MIRRORS="http://distfiles.gentoo.org" GPG_AGENT_INFO="/tmp/gpg-NZUmW9/S.gpg-agent:3422:1" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" GRUB_PLATFORMS="" HOME="/home/christoph" INFOPATH="/home/christoph/prefix/usr/share/info:/home/christoph/prefix/usr/share/gcc-data/x86_64-pc-linux-gnu/4.6.3/info:/home/christoph/prefix//usr/share/binutils-data/x86_64-pc-linux-gnu/2.23/info" INPUT_DEVICES="evdev" IUSE_IMPLICIT="prefix" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LDFLAGS="-Wl,-O1" LDFLAGS_amd64="-m elf_x86_64" LDFLAGS_x32="-m elf32_x86_64" LDFLAGS_x86="-m elf_i386" LESS="-R -M --shift 5" LESSOPEN="|lesspipe %s" LIBDIR_amd64="lib" LIBDIR_amd64_fbsd="lib64" LIBDIR_n32="lib32" LIBDIR_n64="lib64" LIBDIR_o32="lib" LIBDIR_ppc="lib32" LIBDIR_ppc64="lib64" LIBDIR_s390="lib32" LIBDIR_s390x="lib64" LIBDIR_sparc32="lib32" LIBDIR_sparc64="lib64" LIBDIR_x32="libx32" LIBDIR_x86="lib32" LIBDIR_x86_fbsd="lib32" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LS_COLORS="rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.pdf=00;32:*.ps=00;32:*.txt=00;32:*.patch=00;32:*.diff=00;32:*.log=00;32:*.tex=00;32:*.doc=00;32:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36:" MAKEOPTS="-j5" MANPAGER="vimmanless" MANPATH="/home/christoph/prefix/usr/share/man:/home/christoph/prefix/usr/share/gcc-data/x86_64-pc-linux-gnu/4.6.3/man:/home/christoph/prefix//usr/share/binutils-data/x86_64-pc-linux-gnu/2.23/man:/usr/share/man" MULTILIB_ABIS="amd64" MULTILIB_STRICT_DENY="64-bit.*shared object" MULTILIB_STRICT_DIRS="/lib32 /lib /usr/lib32 /usr/lib /usr/kde/*/lib32 /usr/kde/*/lib /usr/qt/*/lib32 /usr/qt/*/lib /usr/X11R6/lib32 /usr/X11R6/lib" MULTILIB_STRICT_EXEMPT="(perl5|gcc|gcc-lib|binutils|eclipse-3|debug|portage|udev)" NETBEANS="apisupport cnd groovy gsf harness ide identity j2ee java mobility nb php profiler soa visualweb webcommon websvccommon xml" OLDPWD="/home/christoph/prefix/usr/portage/dev-lang/perl" PAGER="vimless" PATH="/home/christoph/bin:/home/christoph/prefix/usr/bin:/home/christoph/prefix/bin:/home/christoph/prefix/opt/bin:/home/christoph/prefix/usr/sbin:/home/christoph/prefix/sbin:/home/christoph/prefix/usr/x86_64-pc-linux-gnu/gcc-bin/4.6.3:/usr/bin:/bin" PERLDOC_PAGER="vimmanless" PHP_TARGETS="php5-3" PKGDIR="/home/christoph/prefix/usr/portage/packages" PKG_CONFIG_PATH="/home/christoph/prefix/usr/lib/pkgconfig:/home/christoph/prefix/usr/share/pkgconfig" PORTAGE_ARCHLIST="x86-freebsd x86-netbsd x64-macos ppc-macos ia64-linux x86-winnt amd64-linux x86-solaris x86-fbsd ppc64-linux sparc amd64-fbsd x86-openbsd sparc-solaris x86-cygwin ppc arm-linux mips s390 ppc-aix ppc-openbsd ia64-hpux arm alpha x86-interix sparc-fbsd hppa-hpux x64-solaris sh sparc64-freebsd x86-linux x64-openbsd x64-freebsd ia64 m68k hppa x86-macos x86 ppc64 sparc64-solaris amd64 m68k-mint" PORTAGE_BIN_PATH="/home/christoph/prefix/usr/lib/portage/bin" PORTAGE_COMPRESS_EXCLUDE_SUFFIXES="css gif htm[l]? jp[e]?g js pdf png" PORTAGE_CONFIGROOT="/home/christoph/prefix/" PORTAGE_DEBUG="0" PORTAGE_DEPCACHEDIR="/home/christoph/prefix/var/cache/edb/dep" PORTAGE_ELOG_CLASS="warn error info log qa" PORTAGE_ELOG_CLASSES="log warn error" PORTAGE_ELOG_MAILFROM="christoph@localhost" PORTAGE_ELOG_MAILSUBJECT="[portage] ebuild log for ${PACKAGE} on ${HOST}" PORTAGE_ELOG_MAILURI="christoph" PORTAGE_ELOG_SYSTEM="save" PORTAGE_FETCH_CHECKSUM_TRY_MIRRORS="5" PORTAGE_FETCH_RESUME_MIN_SIZE="350K" PORTAGE_GID="100" PORTAGE_GPG_SIGNING_COMMAND="gpg --sign --digest-algo SHA256 --clearsign --yes --default-key "${PORTAGE_GPG_KEY}" --homedir "${PORTAGE_GPG_DIR}" "${FILE}"" PORTAGE_GROUP="users" PORTAGE_INST_GID="100" PORTAGE_INST_UID="1000" PORTAGE_NICENESS="19" PORTAGE_OVERRIDE_EPREFIX="/home/christoph/prefix" PORTAGE_PYM_PATH="/home/christoph/prefix/usr/lib/portage/pym" PORTAGE_ROOT_USER="christoph" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_RSYNC_RETRIES="-1" PORTAGE_SYNC_STALE="30" PORTAGE_TMPDIR="/home/christoph/prefix/var/tmp" PORTAGE_USER="christoph" PORTAGE_VERBOSE="1" PORTAGE_WORKDIR_MODE="0700" PORTDIR="/home/christoph/prefix/usr/portage" PORTDIR_OVERLAY="/var/lib/overlays/christoph /var/lib/overlays/science" PORT_LOGDIR_CLEAN="find "${PORT_LOGDIR}" -type f ! -name "summary.log*" -mtime +7 -delete" PROFILE_ONLY_VARIABLES="ARCH ELIBC IUSE_IMPLICIT KERNEL USERLAND USE_EXPAND_IMPLICIT USE_EXPAND_UNPREFIXED USE_EXPAND_VALUES_ARCH USE_EXPAND_VALUES_ELIBC USE_EXPAND_VALUES_KERNEL USE_EXPAND_VALUES_USERLAND" PWD="/home/christoph" PYTHONDONTWRITEBYTECODE="1" PYTHONPATH="/home/christoph/prefix/usr/lib/portage/pym" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3 python3_2" RESUMECOMMAND="wget -c -t 3 -T 60 --passive-ftp -O "${DISTDIR}/${FILE}" "${URI}"" RESUMECOMMAND_RSYNC="rsync -avP "${URI}" "${DISTDIR}/${FILE}"" RESUMECOMMAND_SSH="bash -c "x=\${2#ssh://} ; host=\${x%%/*} ; port=\${host##*:} ; host=\${host%:*} ; [[ \${host} = \${port} ]] && port=22 ; exec rsync --rsh=\"ssh -p\${port}\" -avP \"\${host}:/\${x#*/}\" \"\$1\"" rsync "${DISTDIR}/${FILE}" "${URI}"" ROOT="/" ROOTPATH="/home/christoph/prefix/opt/bin:/home/christoph/prefix/usr/x86_64-pc-linux-gnu/gcc-bin/4.6.3" RPMDIR="/home/christoph/prefix/usr/portage/rpm" RUBY_TARGETS="ruby18 ruby19" SHELL="/home/christoph/prefix/bin/bash" SHLVL="1" SSH_AGENT_PID="3577" SSH_AUTH_SOCK="/tmp/ssh-XWuGjAeo3576/agent.3576" SYMLINK_LIB="" SYNC="rsync://rsync.prefix.freens.org/gentoo-portage-prefix" TERM="xterm" UNINSTALL_IGNORE="/lib/modules/*" USE="X amd64 berkdb bzip2 cli cracklib crypt cxx dri fortran gdbm iconv ipv6 mmx modules mudflap ncurses nls nptl openmp pcre prefix readline session sse sse2 ssl tcpd unicode zlib" ABI_X86="64" ALSA_CARDS="hda-intel" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" PHP_TARGETS="php5-3" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3 python3_2" RUBY_TARGETS="ruby18 ruby19" USERLAND="GNU" VIDEO_CARDS="intel" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" USER="christoph" USERLAND="GNU" USE_EXPAND="ABI_X86 ALSA_CARDS ALSA_PCM_PLUGINS APACHE2_MODULES APACHE2_MPMS CALLIGRA_FEATURES CAMERAS COLLECTD_PLUGINS CROSSCOMPILE_OPTS CURL_SSL DRACUT_MODULES DVB_CARDS ELIBC ENLIGHTENMENT_MODULES FCDSL_CARDS FFTOOLS FOO2ZJS_DEVICES FRITZCAPI_CARDS GPSD_PROTOCOLS GRUB_PLATFORMS INPUT_DEVICES KERNEL LCD_DEVICES LIBREOFFICE_EXTENSIONS LINGUAS LIRC_DEVICES MISDN_CARDS NETBEANS_MODULES NGINX_MODULES_HTTP NGINX_MODULES_MAIL OFED_DRIVERS OPENMPI_FABRICS OPENMPI_OFED_FEATURES OPENMPI_RM PHP_TARGETS PYTHON_SINGLE_TARGET PYTHON_TARGETS QEMU_SOFTMMU_TARGETS QEMU_USER_TARGETS RUBY_TARGETS SANE_BACKENDS USERLAND VIDEO_CARDS VOICEMAIL_STORAGE XFCE_PLUGINS XTABLES_ADDONS" USE_EXPAND_HIDDEN="ABI_X86 CROSSCOMPILE_OPTS ELIBC KERNEL USERLAND" USE_EXPAND_IMPLICIT="ARCH ELIBC KERNEL USERLAND" USE_EXPAND_UNPREFIXED="ARCH" USE_EXPAND_VALUES_ARCH="alpha amd64 amd64-fbsd amd64-linux arm arm-linux hppa hppa-hpux ia64 ia64-hpux ia64-linux m68k m68k-mint mips ppc ppc64 ppc64-linux ppc-aix ppc-macos ppc-openbsd s390 sh sparc sparc64-freebsd sparc64-solaris sparc-fbsd sparc-solaris x64-freebsd x64-macos x64-openbsd x64-solaris x86 x86-cygwin x86-fbsd x86-freebsd x86-interix x86-linux x86-macos x86-netbsd x86-openbsd x86-solaris x86-winnt" USE_EXPAND_VALUES_ELIBC="AIX Cygwin Darwin FreeBSD glibc HPUX Interix mintlib NetBSD OpenBSD SunOS uclibc Winnt" USE_EXPAND_VALUES_KERNEL="AIX Cygwin Darwin FreeBSD freemint HPUX Interix linux NetBSD OpenBSD SunOS Winnt" USE_EXPAND_VALUES_USERLAND="BSD GNU" USE_ORDER="env:pkg:conf:defaults:pkginternal:repo:env.d" VIDEO_CARDS="intel" XDG_DATA_DIRS="/home/christoph/prefix/usr/share" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" _="/home/christoph/prefix/usr/bin/emerge"
> After updating to 5.16.3, I got Upgrading from ? If <5.16.0, it's likely a perl-cleaner case. Check the list of files installed by dev-lang/perl.
(In reply to comment #1) > > After updating to 5.16.3, I got > Upgrading from ? > > If <5.16.0, it's likely a perl-cleaner case. > Check the list of files installed by dev-lang/perl. It was an update from perl-5.16.2-r1. And libperl.so.5.16 got installed in ${EPREFIX}/usr/lib. On another amd64-linux (on Fedora) installation perl has ${EPREFIX}/usr/lib in its rpath, but the above one (amd64-linux on amd64 Gentoo) the rpath is missing. I re-emerge binutils (for ld) and downgraded to perl-5.16.2 and perl-5.12.4 again, but perl stays broken.
yeah, rpath is missing somehow, odd
Fixed it by re-emerging gcc and binutils, and running gcc-config.
