Bug 45938 – New suggested package : app-sci/tree-puzzle

• Status: RESOLVED FIXED
• Product: Gentoo Linux

[Description Olivier Fisette (RETIRED) 2004-03-27 16:28:44 UTC]

Here is an ebuild for tree-puzzle-5.1, a program for maximum likelihood analysis of nucleotides, amino acids, and two-state data. The project's home page is at : http://www.tree-puzzle.de/. 

Tree-puzzle is widely used in computational biochemistry. Its inclusion in Portage could benefit biologists and bioinformaticians using Gentoo Linux.

Tree-puzzle is programmed in C, has no special build-time or run-time dependencies, and should (I think) compile on any platform for which a C compiler is available. I have seen tree-puzzle used on x86 systems and on a SGI supercomputer. However, the attached ebuild has only been tested on x86 computers. 

Reproducible: Always
Steps to Reproduce:
1.
2.
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[Comment 1 Olivier Fisette (RETIRED) 2004-03-27 16:30:09 UTC]

Created attachment 28179 [details]
Ebuild for tree-puzzle-5.1

[Comment 2 Olivier Fisette (RETIRED) 2004-05-11 18:47:16 UTC]

Created attachment 31231 [details]
tree-puzzle-5.1.ebuild - Revised ebuild, ready for commit

Added comments; changed dodoc for doins for installing the pdf manual (so it
does not get gziped); removed empty DEPEND declaration; checked syntax with
repoman full.

[Comment 3 Olivier Fisette (RETIRED) 2004-05-11 18:55:36 UTC]

Created attachment 31232 [details]
metadata.xml

Assigns package to the sci herd, and provides detailed description.

[Comment 4 Patrick Kursawe (RETIRED) 2004-05-17 04:54:39 UTC]

Looks good.

[Comment 5 Patrick Kursawe (RETIRED) 2004-05-27 22:47:40 UTC]

*** Bug 51991 has been marked as a duplicate of this bug. ***