avogadro 1.0.3-r1 & 1.1.0 segfault silently when one tries to export raster graphics. Reproducible: Always Steps to Reproduce: file -> export -> graphic, choose any format and run actula export Actual Results: freeze for a little, then segfault Expected Results: new file with screenshot I generally use stable branch, but some unstable packages are unmasked. I use default priority, but for me the bug is major problem.
emerge --info avogadro Portage 2.1.11.31 (default/linux/amd64/10.0, gcc-4.6.3, glibc-2.15-r3, 3.6.11-gentoo x86_64) ================================================================= System Settings ================================================================= System uname: Linux-3.6.11-gentoo-x86_64-Intel-R-_Core-TM-_i7_CPU_980_@_3.33GHz-with-gentoo-2.1 Timestamp of tree: Fri, 22 Feb 2013 09:30:01 +0000 ld GNU ld (GNU Binutils) 2.22 app-shells/bash: 4.2_p37 dev-java/java-config: 2.1.12-r1 dev-lang/python: 2.7.3-r2, 3.2.3 dev-util/cmake: 2.8.9 dev-util/pkgconfig: 0.28 sys-apps/baselayout: 2.1-r1 sys-apps/openrc: 0.11.8 sys-apps/sandbox: 2.5 sys-devel/autoconf: 2.13, 2.69 sys-devel/automake: 1.9.6-r3, 1.11.6 sys-devel/binutils: 2.22-r1 sys-devel/gcc: 4.6.3 sys-devel/gcc-config: 1.7.3 sys-devel/libtool: 2.4-r1 sys-devel/make: 3.82-r4 sys-kernel/linux-headers: 3.6 (virtual/os-headers) sys-libs/glibc: 2.15-r3 Repositories: gentoo gentoo-haskell science x-portage ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="* -@EULA" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -march=native -mtune=native" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/openvpn/easy-rsa" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -march=native -mtune=native" DISTDIR="/usr/portage/distfiles" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch" FFLAGS="-O3 -march=native -mtune=native" GENTOO_MIRRORS="http://distfiles.gentoo.org" LANG="en_US.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j12" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/var/lib/layman/haskell /var/lib/layman/science /usr/local/portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="X a52 aac acl acpi alsa amd64 apng bazaar berkdb bmp bzip2 cairo cdda cli consolekit cracklib crypt cups cvs cxx dbus declarative djvu dri dts dv dvb dvd embedded encode extras faxpp fbcon ffmpeg flac fortran gdbm gdu gif git gpm graphite gtk gudev htmltidy http hwdb iconv icu ipv6 java jpeg kde kpathsea lame latex3 libvisual lto lxde lzma mercurial minizip mms mmx mng modules mp3 mpeg mpi mpi-threads mudflap multilib musepack mythtv ncurses nls nptl nsplugin ogg opengl openmp oss pam pcre perl png policykit pstricks python qt qt3support qt4 readline science session sql sqlite sse sse2 ssl subversion svg taglib tcl tcpd theora threads tiff truetype unicode v4l vcd vnc vorbis vpx wavpack webkit xine xml xsl xv zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en ru" PHP_TARGETS="php5-3" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_2" RUBY_TARGETS="ruby18 ruby19" USERLAND="GNU" VIDEO_CARDS="VESA" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON ================================================================= Package Settings ================================================================= sci-chemistry/avogadro-1.1.0 was built with the following: USE="glsl python sse2 -test"
cat /proc/cpuinfo processor : 0 vendor_id : GenuineIntel cpu family : 6 model : 44 model name : Intel(R) Core(TM) i7 CPU 980 @ 3.33GHz stepping : 2 microcode : 0xf cpu MHz : 3326.000 cache size : 12288 KB physical id : 0 siblings : 12 core id : 0 cpu cores : 6 apicid : 0 initial apicid : 0 fpu : yes fpu_exception : yes cpuid level : 11 wp : yes flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm pcid sse4_1 sse4_2 popcnt aes lahf_lm ida arat dtherm tpr_shadow vnmi flexpriority ept vpid bogomips : 6749.31 clflush size : 64 cache_alignment : 64 address sizes : 36 bits physical, 48 bits virtual power management:
could you please try to get a backtrace? http://www.gentoo.org/proj/en/qa/backtraces.xml
Created attachment 339704 [details] crash log
(In reply to comment #3) > could you please try to get a backtrace? > > http://www.gentoo.org/proj/en/qa/backtraces.xml I'm really sorry, but I can't, at least for now. My apologies.
Hmm, just exported a nice bitmap of benzene... Care to attach a molecule file that reproduces the problem?
Cannot reproduce it anymore.
Please reopen if still exists with latest versions.
